Wall clock time and date at job start Wed Apr 1 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38294 * 119.93383 * 2 1 4 4 C 1.38074 * 120.09016 * 179.72369 * 3 2 1 5 5 C 1.38960 * 119.95207 * 0.49385 * 4 3 2 6 6 N 1.39730 * 120.07154 * 179.78904 * 5 4 3 7 7 C 1.34779 * 119.99914 * 214.82385 * 6 5 4 8 8 O 1.21392 * 120.00000 * 355.38155 * 7 6 5 9 9 C 1.49212 * 119.99718 * 175.38315 * 7 6 5 10 10 O 1.21412 * 120.00294 * 359.97438 * 9 7 6 11 11 N 1.34775 * 119.99510 * 180.27486 * 9 7 6 12 12 C 1.40309 * 119.99740 * 179.72191 * 11 9 7 13 13 C 1.40714 * 126.09645 * 359.69439 * 12 11 9 14 14 N 1.30887 * 108.37352 * 179.87650 * 13 12 11 15 15 N 1.40059 * 108.43341 * 0.37584 * 14 13 12 16 16 C 1.37297 * 126.05771 * 179.71779 * 15 14 13 17 17 H 1.07996 * 120.00271 * 180.02562 * 16 15 14 18 18 C 1.39011 * 119.99527 * 0.04722 * 16 15 14 19 19 N 1.31278 * 119.99859 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99626 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46985 * 90.00215 * 20 18 16 22 22 H 1.48502 * 109.47302 * 209.99584 * 20 18 16 23 23 H 1.48493 * 109.47516 * 330.00032 * 20 18 16 24 24 C 1.35781 * 126.09853 * 179.97438 * 12 11 9 25 25 C 1.38886 * 119.85965 * 359.51009 * 5 4 3 26 26 C 1.38230 * 119.90859 * 0.25728 * 25 5 4 27 27 Cl 1.73606 * 119.97309 * 180.02562 * 26 25 5 28 28 H 1.08997 * 109.46337 * 270.01875 * 1 2 3 29 29 H 1.08996 * 109.46862 * 30.01624 * 1 2 3 30 30 H 1.08994 * 109.47131 * 150.01678 * 1 2 3 31 31 H 1.07998 * 119.95178 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.02604 * 180.26057 * 4 3 2 33 33 H 0.97000 * 119.99948 * 34.81893 * 6 5 4 34 34 H 0.96999 * 120.00478 * 359.72643 * 11 9 7 35 35 H 1.08000 * 125.81583 * 0.02562 * 13 12 11 36 36 H 0.97004 * 119.99556 * 179.97438 * 19 18 16 37 37 H 1.08007 * 126.25100 * 359.93455 * 24 12 11 38 38 H 1.08001 * 120.04311 * 180.23181 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5778 1.2022 0.0058 5 6 4.2749 0.0002 0.0012 6 7 5.6722 0.0011 0.0025 7 6 6.3474 -0.9537 -0.6675 8 8 5.7445 -1.8618 -1.2020 9 6 7.8360 -0.8947 -0.7524 10 8 8.4389 0.0137 -0.2182 11 7 8.5107 -1.8464 -1.4271 12 6 9.9100 -1.7877 -1.5119 13 6 10.7336 -0.7952 -0.9494 14 7 11.9783 -1.0801 -1.2371 15 7 11.9989 -2.2555 -1.9985 16 6 13.1176 -2.8750 -2.4984 17 1 13.0198 -3.7820 -3.0763 18 6 14.3761 -2.3348 -2.2603 19 7 14.4949 -1.2321 -1.5579 20 14 15.8981 -3.1779 -2.9399 21 1 16.1979 -2.6432 -4.2925 22 1 17.0505 -2.9203 -2.0394 23 1 15.6561 -4.6403 -3.0282 24 6 10.7104 -2.6756 -2.1558 25 6 3.5799 -1.2023 0.0011 26 6 2.1976 -1.1993 0.0002 27 17 1.3271 -2.7014 0.0008 28 1 -0.3632 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6553 2.1327 -0.0004 32 1 4.1157 2.1388 0.0100 33 1 6.1563 0.6890 0.4857 34 1 8.0290 -2.5720 -1.8542 35 1 10.3965 0.0555 -0.3757 36 1 15.3732 -0.8554 -1.3915 37 1 10.3863 -3.5543 -2.6939 38 1 4.1187 -2.1383 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775528780.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:39 Heat of formation + Delta-G solvation = 41.207991 kcal Electronic energy + Delta-G solvation = -26095.483098 eV Core-core repulsion = 21966.207200 eV Total energy + Delta-G solvation = -4129.275897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.14516 -39.99219 -39.22242 -38.04836 -36.77782 -35.53225 -34.32659 -33.24428 -31.96236 -31.10418 -30.38636 -28.24316 -27.14905 -25.35800 -24.07744 -23.37379 -21.80379 -21.08880 -20.41531 -19.57461 -18.72607 -17.65557 -17.54097 -16.37950 -16.07085 -15.84235 -15.55967 -15.38239 -15.12889 -14.77763 -14.50412 -14.21444 -14.05709 -13.83801 -13.68973 -13.18124 -13.05142 -12.82365 -12.68183 -12.33469 -12.05607 -11.80385 -11.73121 -11.60239 -11.33035 -11.31058 -11.09373 -10.88194 -10.58793 -10.45100 -10.38813 -9.32303 -9.28950 -9.09336 -8.94252 -8.41635 -8.19171 -6.85897 -6.65417 -4.33136 0.67775 0.91050 1.52049 1.84020 2.35407 2.88348 3.00993 3.06011 3.11838 3.33775 3.62545 3.64501 3.82725 4.29104 4.40128 4.47619 4.53560 4.70703 4.88699 4.91085 4.93438 5.02710 5.26957 5.29983 5.41696 5.59834 5.78062 5.89922 5.98553 6.07238 6.13789 6.28138 6.50239 6.65768 6.78111 6.82966 6.97932 7.10439 7.55914 7.75095 7.95262 8.10753 8.36150 8.61651 9.25026 9.53428 10.30253 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.032804 B = 0.001810 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.338697 B =15462.462973 C =16181.725549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.090 4.090 4 C -0.132 4.132 5 C 0.153 3.847 6 N -0.647 5.647 7 C 0.516 3.484 8 O -0.505 6.505 9 C 0.485 3.515 10 O -0.519 6.519 11 N -0.577 5.577 12 C -0.072 4.072 13 C -0.025 4.025 14 N -0.260 5.260 15 N -0.137 5.137 16 C -0.321 4.321 17 H 0.119 0.881 18 C 0.046 3.954 19 N -0.766 5.766 20 Si 0.937 3.063 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.263 1.263 24 C -0.076 4.076 25 C -0.110 4.110 26 C -0.019 4.019 27 Cl -0.064 7.064 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.427 0.573 34 H 0.410 0.590 35 H 0.178 0.822 36 H 0.277 0.723 37 H 0.150 0.850 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.309 2.560 3.029 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 C -0.109 4.109 4 C -0.152 4.152 5 C 0.058 3.942 6 N -0.295 5.295 7 C 0.299 3.701 8 O -0.379 6.379 9 C 0.265 3.735 10 O -0.397 6.397 11 N -0.220 5.220 12 C -0.178 4.178 13 C -0.200 4.200 14 N -0.091 5.091 15 N 0.097 4.903 16 C -0.454 4.454 17 H 0.136 0.864 18 C -0.172 4.172 19 N -0.392 5.392 20 Si 0.760 3.240 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.228 4.228 25 C -0.131 4.131 26 C -0.046 4.046 27 Cl -0.035 7.035 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.265 0.735 34 H 0.245 0.755 35 H 0.195 0.805 36 H 0.087 0.913 37 H 0.167 0.833 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.897 2.917 3.216 22.323 hybrid contribution -0.263 -0.825 -0.425 0.965 sum -22.159 2.091 2.791 22.432 Atomic orbital electron populations 1.20843 0.90207 1.03455 1.02838 1.19786 0.96867 0.91338 1.01469 1.20770 0.93150 0.97271 0.99694 1.21064 0.94516 0.96842 1.02809 1.17545 0.82354 0.93546 1.00711 1.43114 1.04309 1.31236 1.50803 1.20561 0.89296 0.81933 0.78284 1.90754 1.69916 1.32867 1.44332 1.19314 0.86613 0.84462 0.83070 1.90680 1.68437 1.34213 1.46373 1.42112 1.05591 1.25394 1.48880 1.17230 0.80679 1.03607 1.16311 1.24152 0.90084 1.00816 1.04979 1.78281 1.16911 0.99832 1.14085 1.44583 1.03253 1.14265 1.28196 1.19949 0.82296 1.09341 1.33768 0.86356 1.25680 0.99869 0.95805 0.95816 1.70203 1.25220 1.15550 1.28259 0.85790 0.79499 0.79697 0.78989 1.19492 1.20002 1.18706 1.21304 0.85254 1.03595 1.12630 1.21179 0.92062 0.99155 1.00660 1.20583 0.91858 0.86917 1.05255 1.98363 1.76295 1.32038 1.96809 0.90733 0.91107 0.90867 0.84535 0.84604 0.73450 0.75473 0.80525 0.91282 0.83274 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.61 36.01 0.35 -0.39 16 2 C -0.09 -0.80 5.89 -104.54 -0.62 -1.42 16 3 C -0.09 -0.68 9.69 -39.62 -0.38 -1.07 16 4 C -0.13 -1.12 9.97 -39.37 -0.39 -1.52 16 5 C 0.15 1.68 6.30 -83.75 -0.53 1.16 16 6 N -0.65 -7.52 5.32 -10.34 -0.05 -7.57 16 7 C 0.52 7.41 7.72 -11.70 -0.09 7.32 16 8 O -0.50 -7.82 13.91 5.46 0.08 -7.74 16 9 C 0.49 8.30 7.85 -11.70 -0.09 8.20 16 10 O -0.52 -9.93 13.62 5.44 0.07 -9.86 16 11 N -0.58 -10.41 5.45 -10.48 -0.06 -10.46 16 12 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 13 C -0.02 -0.62 10.85 -17.02 -0.18 -0.80 16 14 N -0.26 -7.32 10.39 30.81 0.32 -7.00 16 15 N -0.14 -3.64 3.73 -11.40 -0.04 -3.68 16 16 C -0.32 -8.26 10.25 -14.82 -0.15 -8.41 16 17 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 18 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 19 N -0.77 -20.80 11.81 55.50 0.66 -20.15 16 20 Si 0.94 18.41 29.55 -169.99 -5.02 13.39 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 24 C -0.08 -1.75 11.50 -16.38 -0.19 -1.94 16 25 C -0.11 -1.30 8.48 -39.34 -0.33 -1.64 16 26 C -0.02 -0.20 6.31 -39.53 -0.25 -0.45 16 27 Cl -0.06 -0.64 27.28 -51.86 -1.41 -2.05 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.07 0.49 6.89 -51.93 -0.36 0.13 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 33 H 0.43 4.25 8.29 -40.82 -0.34 3.91 16 34 H 0.41 6.31 8.29 -40.82 -0.34 5.97 16 35 H 0.18 4.30 5.92 -52.49 -0.31 3.99 16 36 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.15 2.86 8.06 -52.48 -0.42 2.43 16 38 H 0.15 2.01 6.22 -52.49 -0.33 1.68 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -31.73 351.34 -7.04 -38.77 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -3.33 Total: 13.17 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.54 Total: -2.09 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.82 Total: -48.87 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.15 Total: -17.60 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.41 Total: -2.05 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.73 -7.04 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775528780.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.976 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds