Wall clock time and date at job start Wed Apr 1 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38294 * 119.93383 * 2 1 4 4 C 1.38074 * 120.09016 * 179.72369 * 3 2 1 5 5 C 1.38960 * 119.95207 * 0.49385 * 4 3 2 6 6 N 1.39730 * 120.07154 * 179.78904 * 5 4 3 7 7 C 1.34779 * 119.99914 * 214.82385 * 6 5 4 8 8 O 1.21392 * 120.00000 * 355.38155 * 7 6 5 9 9 C 1.49212 * 119.99718 * 175.38315 * 7 6 5 10 10 O 1.21412 * 120.00294 * 359.97438 * 9 7 6 11 11 N 1.34775 * 119.99510 * 180.27486 * 9 7 6 12 12 C 1.40309 * 119.99740 * 179.72191 * 11 9 7 13 13 C 1.40714 * 126.09645 * 359.69439 * 12 11 9 14 14 N 1.30887 * 108.37352 * 179.87650 * 13 12 11 15 15 N 1.40059 * 108.43341 * 0.37584 * 14 13 12 16 16 C 1.37297 * 126.05771 * 179.71779 * 15 14 13 17 17 H 1.07996 * 120.00271 * 180.02562 * 16 15 14 18 18 C 1.39011 * 119.99527 * 0.04722 * 16 15 14 19 19 N 1.31278 * 119.99859 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99626 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46985 * 90.00215 * 20 18 16 22 22 H 1.48502 * 109.47302 * 209.99584 * 20 18 16 23 23 H 1.48493 * 109.47516 * 330.00032 * 20 18 16 24 24 C 1.35781 * 126.09853 * 179.97438 * 12 11 9 25 25 C 1.38886 * 119.85965 * 359.51009 * 5 4 3 26 26 C 1.38230 * 119.90859 * 0.25728 * 25 5 4 27 27 Cl 1.73606 * 119.97309 * 180.02562 * 26 25 5 28 28 H 1.08997 * 109.46337 * 270.01875 * 1 2 3 29 29 H 1.08996 * 109.46862 * 30.01624 * 1 2 3 30 30 H 1.08994 * 109.47131 * 150.01678 * 1 2 3 31 31 H 1.07998 * 119.95178 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.02604 * 180.26057 * 4 3 2 33 33 H 0.97000 * 119.99948 * 34.81893 * 6 5 4 34 34 H 0.96999 * 120.00478 * 359.72643 * 11 9 7 35 35 H 1.08000 * 125.81583 * 0.02562 * 13 12 11 36 36 H 0.97004 * 119.99556 * 179.97438 * 19 18 16 37 37 H 1.08007 * 126.25100 * 359.93455 * 24 12 11 38 38 H 1.08001 * 120.04311 * 180.23181 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5778 1.2022 0.0058 5 6 4.2749 0.0002 0.0012 6 7 5.6722 0.0011 0.0025 7 6 6.3474 -0.9537 -0.6675 8 8 5.7445 -1.8618 -1.2020 9 6 7.8360 -0.8947 -0.7524 10 8 8.4389 0.0137 -0.2182 11 7 8.5107 -1.8464 -1.4271 12 6 9.9100 -1.7877 -1.5119 13 6 10.7336 -0.7952 -0.9494 14 7 11.9783 -1.0801 -1.2371 15 7 11.9989 -2.2555 -1.9985 16 6 13.1176 -2.8750 -2.4984 17 1 13.0198 -3.7820 -3.0763 18 6 14.3761 -2.3348 -2.2603 19 7 14.4949 -1.2321 -1.5579 20 14 15.8981 -3.1779 -2.9399 21 1 16.1979 -2.6432 -4.2925 22 1 17.0505 -2.9203 -2.0394 23 1 15.6561 -4.6403 -3.0282 24 6 10.7104 -2.6756 -2.1558 25 6 3.5799 -1.2023 0.0011 26 6 2.1976 -1.1993 0.0002 27 17 1.3271 -2.7014 0.0008 28 1 -0.3632 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6553 2.1327 -0.0004 32 1 4.1157 2.1388 0.0100 33 1 6.1563 0.6890 0.4857 34 1 8.0290 -2.5720 -1.8542 35 1 10.3965 0.0555 -0.3757 36 1 15.3732 -0.8554 -1.3915 37 1 10.3863 -3.5543 -2.6939 38 1 4.1187 -2.1383 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775528780.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:39 Heat of formation + Delta-G solvation = 20.298161 kcal Electronic energy + Delta-G solvation = -26096.389816 eV Core-core repulsion = 21966.207200 eV Total energy + Delta-G solvation = -4130.182616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.33445 -41.55745 -40.40540 -39.34668 -37.58271 -36.61171 -35.83356 -34.98507 -32.72835 -32.30438 -31.82025 -29.96141 -28.11834 -26.97568 -25.38113 -24.16233 -23.01970 -22.55732 -21.68139 -21.27466 -19.98647 -19.25136 -18.67550 -17.55118 -17.40782 -17.26319 -16.87140 -16.52735 -16.31623 -15.86426 -15.62309 -15.51608 -15.16690 -15.07458 -14.88772 -14.76942 -14.54767 -13.52662 -13.46995 -13.40790 -13.30928 -13.06900 -12.93066 -12.89578 -12.83401 -12.55676 -12.20467 -12.09409 -12.00526 -11.82069 -11.29631 -11.08589 -10.88893 -10.67450 -10.15612 -9.85615 -9.20899 -8.65194 -8.49949 -6.27804 -0.21376 0.15760 0.40246 1.03175 1.20145 1.28347 1.41353 1.58314 1.69357 1.95486 2.10356 2.46185 2.47922 2.58563 2.85161 3.06739 3.39376 3.78664 3.88595 4.04600 4.20201 4.32050 4.38021 4.50243 4.64057 4.73789 4.84021 4.92351 4.96804 5.00613 5.06053 5.16114 5.21975 5.27448 5.28454 5.42151 5.75899 5.85039 5.92334 6.20576 6.39561 6.60236 6.68813 6.98173 7.39537 7.61314 8.49158 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.032804 B = 0.001810 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.338697 B =15462.462973 C =16181.725549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.090 4.090 3 C -0.084 4.084 4 C -0.122 4.122 5 C 0.129 3.871 6 N -0.631 5.631 7 C 0.526 3.474 8 O -0.517 6.517 9 C 0.491 3.509 10 O -0.537 6.537 11 N -0.578 5.578 12 C -0.058 4.058 13 C -0.046 4.046 14 N -0.308 5.308 15 N -0.163 5.163 16 C -0.353 4.353 17 H 0.142 0.858 18 C -0.005 4.005 19 N -0.820 5.820 20 Si 1.019 2.981 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.245 1.245 24 C -0.073 4.073 25 C -0.128 4.128 26 C -0.035 4.035 27 Cl -0.067 7.067 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.173 0.827 32 H 0.161 0.839 33 H 0.434 0.566 34 H 0.424 0.576 35 H 0.178 0.822 36 H 0.278 0.722 37 H 0.188 0.812 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.423 2.754 2.441 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.091 4.091 3 C -0.102 4.102 4 C -0.142 4.142 5 C 0.035 3.965 6 N -0.279 5.279 7 C 0.308 3.692 8 O -0.392 6.392 9 C 0.273 3.727 10 O -0.415 6.415 11 N -0.223 5.223 12 C -0.165 4.165 13 C -0.221 4.221 14 N -0.139 5.139 15 N 0.070 4.930 16 C -0.484 4.484 17 H 0.159 0.841 18 C -0.217 4.217 19 N -0.447 5.447 20 Si 0.838 3.162 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.168 1.168 24 C -0.224 4.224 25 C -0.149 4.149 26 C -0.063 4.063 27 Cl -0.038 7.038 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.191 0.809 32 H 0.179 0.821 33 H 0.275 0.725 34 H 0.262 0.738 35 H 0.195 0.805 36 H 0.088 0.912 37 H 0.205 0.795 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.077 3.113 2.638 24.420 hybrid contribution 0.083 -0.801 -0.171 0.823 sum -23.994 2.312 2.468 24.231 Atomic orbital electron populations 1.20921 0.88423 1.04259 1.03756 1.20181 0.98253 0.90938 0.99746 1.21214 0.92824 0.98256 0.97910 1.21387 0.95109 0.96721 1.01004 1.17724 0.81592 0.94383 1.02800 1.42958 1.04900 1.30322 1.49689 1.19874 0.87655 0.82665 0.79020 1.90767 1.69551 1.33543 1.45318 1.19861 0.87975 0.83393 0.81508 1.90670 1.69409 1.34814 1.46651 1.42034 1.03923 1.26498 1.49805 1.17258 0.82534 1.02152 1.14507 1.24277 0.90233 1.01777 1.05847 1.78172 1.18543 1.01512 1.15692 1.44847 1.04653 1.14437 1.29112 1.20657 0.82749 1.10410 1.34584 0.84093 1.26874 1.03194 0.96133 0.95499 1.70369 1.26079 1.17762 1.30532 0.84589 0.74460 0.79198 0.77976 1.18879 1.20110 1.16837 1.22004 0.84254 1.04357 1.11827 1.21090 0.92827 0.98785 1.02150 1.20731 0.91554 0.87669 1.06307 1.98356 1.76167 1.32446 1.96881 0.89638 0.88945 0.91474 0.80943 0.82118 0.72533 0.73807 0.80545 0.91205 0.79508 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.61 71.24 0.68 -0.44 16 2 C -0.09 -1.32 5.89 -19.81 -0.12 -1.43 16 3 C -0.08 -0.96 9.69 22.24 0.22 -0.74 16 4 C -0.12 -1.72 9.97 22.40 0.22 -1.49 16 5 C 0.13 2.65 6.30 38.21 0.24 2.89 16 6 N -0.63 -13.99 5.32 -304.96 -1.62 -15.62 16 7 C 0.53 14.78 7.72 87.20 0.67 15.45 16 8 O -0.52 -15.80 13.91 -3.38 -0.05 -15.84 16 9 C 0.49 16.65 7.85 87.20 0.68 17.33 16 10 O -0.54 -20.61 13.62 -3.44 -0.05 -20.66 16 11 N -0.58 -20.54 5.45 -305.42 -1.66 -22.20 16 12 C -0.06 -2.62 6.90 37.82 0.26 -2.36 16 13 C -0.05 -2.38 10.85 85.44 0.93 -1.46 16 14 N -0.31 -17.96 10.39 -56.43 -0.59 -18.55 16 15 N -0.16 -8.83 3.73 -189.97 -0.71 -9.54 16 16 C -0.35 -18.29 10.25 84.02 0.86 -17.43 16 17 H 0.14 6.34 7.83 -2.91 -0.02 6.31 16 18 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 19 N -0.82 -46.16 11.81 21.67 0.26 -45.90 16 20 Si 1.02 37.75 29.55 68.60 2.03 39.77 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 22 H -0.28 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.25 -8.28 7.11 99.48 0.71 -7.57 16 24 C -0.07 -3.35 11.50 83.41 0.96 -2.39 16 25 C -0.13 -2.97 8.48 22.42 0.19 -2.78 16 26 C -0.04 -0.71 6.31 22.30 0.14 -0.57 16 27 Cl -0.07 -1.31 27.28 -2.72 -0.07 -1.39 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.51 8.08 -2.39 -0.02 0.49 16 30 H 0.07 0.75 6.89 -2.39 -0.02 0.73 16 31 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 32 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 33 H 0.43 8.12 8.29 -92.71 -0.77 7.35 16 34 H 0.42 12.62 8.29 -92.71 -0.77 11.85 16 35 H 0.18 8.93 5.92 -2.91 -0.02 8.92 16 36 H 0.28 14.36 8.31 -92.70 -0.77 13.59 16 37 H 0.19 6.80 8.06 -2.91 -0.02 6.78 16 38 H 0.13 3.54 6.22 -2.91 -0.02 3.52 16 Total: -1.00 -72.09 351.34 3.57 -68.52 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.37 Total: 36.60 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.41 Total: 4.82 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -4.33 Total: -111.81 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.09 Total: -36.50 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.77 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.07 Total: -1.39 kcal Total: -72.09 3.57 -68.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775528780.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.817 kcal (2) G-P(sol) polarization free energy of solvation -72.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds