Wall clock time and date at job start Wed Apr 1 2020 05:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 120.04171 * 2 1 4 4 Cl 1.73591 * 119.97681 * 359.97373 * 3 2 1 5 5 C 1.38389 * 120.04305 * 180.25484 * 3 2 1 6 6 C 1.38300 * 120.14126 * 359.44385 * 5 3 2 7 7 C 1.38077 * 120.08537 * 0.55426 * 6 5 3 8 8 C 1.38881 * 120.04296 * 179.97438 * 2 1 3 9 9 N 1.39725 * 120.07174 * 0.04364 * 8 2 1 10 10 C 1.34775 * 120.00275 * 204.83602 * 9 8 2 11 11 O 1.21397 * 120.00221 * 5.51832 * 10 9 8 12 12 C 1.49211 * 120.00438 * 185.52267 * 10 9 8 13 13 O 1.21414 * 119.99800 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00438 * 179.97438 * 12 10 9 15 15 C 1.40294 * 120.00137 * 179.97438 * 14 12 10 16 16 C 1.40721 * 126.10334 * 359.68884 * 15 14 12 17 17 N 1.30874 * 108.38221 * 179.85195 * 16 15 14 18 18 N 1.40071 * 108.43077 * 0.40728 * 17 16 15 19 19 C 1.37292 * 126.05376 * 179.72031 * 18 17 16 20 20 H 1.07995 * 120.00335 * 180.02562 * 19 18 17 21 21 C 1.39010 * 120.00120 * 0.02562 * 19 18 17 22 22 N 1.31281 * 119.99941 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00071 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47520 * 90.00124 * 23 21 19 25 25 H 1.48508 * 109.47306 * 210.00148 * 23 21 19 26 26 H 1.48501 * 109.47264 * 330.00023 * 23 21 19 27 27 C 1.35793 * 126.09941 * 179.97438 * 15 14 12 28 28 H 1.08999 * 109.47115 * 90.00324 * 1 2 3 29 29 H 1.09000 * 109.47565 * 210.00202 * 1 2 3 30 30 H 1.09001 * 109.47239 * 330.00421 * 1 2 3 31 31 H 1.08009 * 119.92705 * 179.70368 * 5 3 2 32 32 H 1.08000 * 119.94990 * 180.28391 * 6 5 3 33 33 H 1.08007 * 120.02215 * 179.70672 * 7 6 5 34 34 H 0.96998 * 120.00257 * 24.83475 * 9 8 2 35 35 H 0.97003 * 119.99533 * 359.97438 * 14 12 10 36 36 H 1.08006 * 125.80475 * 0.02562 * 16 15 14 37 37 H 0.96997 * 120.00351 * 180.02562 * 22 21 19 38 38 H 1.08002 * 126.25042 * 359.96210 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1967 0.0000 4 17 1.3316 2.7003 -0.0007 5 6 3.5829 1.1967 -0.0053 6 6 4.2774 0.0007 0.0009 7 6 3.5919 -1.1978 0.0010 8 6 2.2023 -1.2022 0.0005 9 7 1.5061 -2.4137 0.0002 10 6 2.0883 -3.5257 0.4908 11 8 3.1768 -3.4563 1.0239 12 6 1.3952 -4.8423 0.3789 13 8 0.3064 -4.9118 -0.1539 14 7 1.9777 -5.9545 0.8691 15 6 1.3257 -7.1923 0.7643 16 6 0.0651 -7.4187 0.1812 17 7 -0.2062 -8.6961 0.2679 18 7 0.8607 -9.3325 0.9150 19 6 0.9494 -10.6727 1.1996 20 1 1.8212 -11.0608 1.7052 21 6 -0.0829 -11.5301 0.8370 22 7 -1.1425 -11.0585 0.2219 23 14 0.0376 -13.3534 1.2248 24 1 -0.5492 -13.6146 2.5638 25 1 -0.7060 -14.1280 0.1989 26 1 1.4637 -13.7674 1.2202 27 6 1.7960 -8.3848 1.2123 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 4.1217 2.1328 -0.0102 32 1 5.3574 0.0044 0.0014 33 1 4.1353 -2.1312 0.0011 34 1 0.6037 -2.4544 -0.3532 35 1 2.8477 -5.8990 1.2944 36 1 -0.5691 -6.6667 -0.2646 37 1 -1.8630 -11.6567 -0.0308 38 1 2.7385 -8.5524 1.7125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781979546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:45 Heat of formation + Delta-G solvation = 44.348473 kcal Electronic energy + Delta-G solvation = -26333.060426 eV Core-core repulsion = 22203.920710 eV Total energy + Delta-G solvation = -4129.139716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27810 -40.02905 -39.20234 -38.05419 -36.79928 -35.42989 -34.32421 -33.27852 -32.81569 -30.43300 -30.13923 -28.16811 -27.30609 -25.66967 -24.50136 -22.85955 -21.77287 -21.11109 -20.38029 -19.59450 -18.72732 -17.68224 -17.56522 -16.52200 -16.14988 -15.94721 -15.57086 -15.34868 -15.13627 -14.80083 -14.58368 -14.23534 -13.93662 -13.73835 -13.68216 -13.17112 -13.07804 -12.89813 -12.75086 -12.23336 -12.01670 -11.82977 -11.78683 -11.63208 -11.33800 -11.25801 -11.12026 -10.94006 -10.66442 -10.59612 -10.40892 -9.31827 -9.30259 -8.96100 -8.94223 -8.42517 -8.20623 -6.87493 -6.66525 -4.34370 0.70518 0.86379 1.54187 1.74961 2.35102 2.87158 3.00164 3.05214 3.10382 3.37499 3.60774 3.61962 3.80391 4.27551 4.36839 4.43461 4.55280 4.68663 4.86916 4.92300 5.01531 5.08491 5.23816 5.29713 5.32903 5.75871 5.81766 5.88685 5.95731 6.10452 6.12615 6.26472 6.52858 6.64260 6.76334 6.81612 6.95822 7.09138 7.50977 7.73517 7.92754 8.09183 8.33926 8.60183 9.23681 9.52010 10.29112 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.036894 B = 0.001815 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.748091 B =15419.986215 C =16072.666660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C -0.017 4.017 4 Cl -0.066 7.066 5 C -0.126 4.126 6 C -0.091 4.091 7 C -0.123 4.123 8 C 0.163 3.837 9 N -0.643 5.643 10 C 0.517 3.483 11 O -0.503 6.503 12 C 0.484 3.516 13 O -0.519 6.519 14 N -0.576 5.576 15 C -0.073 4.073 16 C -0.024 4.024 17 N -0.260 5.260 18 N -0.136 5.136 19 C -0.321 4.321 20 H 0.119 0.881 21 C 0.046 3.954 22 N -0.766 5.766 23 Si 0.937 3.063 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.263 1.263 27 C -0.076 4.076 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.426 0.574 35 H 0.410 0.590 36 H 0.178 0.822 37 H 0.277 0.723 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 20.725 -0.357 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.109 4.109 3 C -0.044 4.044 4 Cl -0.037 7.037 5 C -0.146 4.146 6 C -0.110 4.110 7 C -0.143 4.143 8 C 0.067 3.933 9 N -0.289 5.289 10 C 0.300 3.700 11 O -0.377 6.377 12 C 0.264 3.736 13 O -0.396 6.396 14 N -0.219 5.219 15 C -0.179 4.179 16 C -0.200 4.200 17 N -0.091 5.091 18 N 0.097 4.903 19 C -0.453 4.453 20 H 0.137 0.863 21 C -0.172 4.172 22 N -0.392 5.392 23 Si 0.760 3.240 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.187 1.187 27 C -0.228 4.228 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.171 0.829 34 H 0.265 0.735 35 H 0.245 0.755 36 H 0.195 0.805 37 H 0.087 0.913 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.181 19.753 -0.726 20.711 hybrid contribution 0.686 0.087 0.454 0.827 sum 6.867 19.840 -0.272 20.996 Atomic orbital electron populations 1.20861 0.89828 1.04024 1.03330 1.19400 0.96857 0.90133 1.04472 1.20453 0.92190 0.86226 1.05559 1.98360 1.76992 1.31501 1.96877 1.21035 0.91744 0.99369 1.02441 1.21005 1.00327 0.90981 0.98694 1.21562 0.92280 1.00377 1.00114 1.17431 0.91411 0.84098 1.00329 1.43179 1.19724 1.06086 1.59923 1.20549 0.85830 0.85619 0.77980 1.90713 1.20336 1.86221 1.40449 1.19309 0.86701 0.84307 0.83260 1.90686 1.20049 1.85314 1.43593 1.42098 1.21077 1.04874 1.53842 1.17227 0.98195 0.83544 1.18931 1.24155 0.95601 0.95181 1.05051 1.78285 1.08396 1.04085 1.18333 1.44587 1.09479 1.05626 1.30571 1.19948 1.06840 0.78705 1.39847 0.86347 1.25683 0.94701 1.01469 0.95328 1.70199 1.04956 1.36210 1.27835 0.85791 0.79351 0.80038 0.78794 1.19487 1.19998 1.18699 1.21302 0.98811 0.88296 1.14377 0.90218 0.90969 0.90175 0.84861 0.84574 0.82929 0.73499 0.75479 0.80524 0.91262 0.83269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.05 36.01 0.33 -0.70 16 2 C -0.11 -1.05 5.90 -104.38 -0.62 -1.67 16 3 C -0.02 -0.16 6.31 -39.53 -0.25 -0.41 16 4 Cl -0.07 -0.56 27.29 -51.86 -1.42 -1.98 16 5 C -0.13 -1.08 9.83 -39.50 -0.39 -1.46 16 6 C -0.09 -0.80 10.04 -39.62 -0.40 -1.20 16 7 C -0.12 -1.35 8.72 -39.37 -0.34 -1.69 16 8 C 0.16 1.83 6.41 -83.76 -0.54 1.29 16 9 N -0.64 -7.58 4.96 -10.34 -0.05 -7.63 16 10 C 0.52 7.25 7.68 -11.70 -0.09 7.16 16 11 O -0.50 -7.40 13.63 5.46 0.07 -7.33 16 12 C 0.48 8.15 7.85 -11.70 -0.09 8.06 16 13 O -0.52 -9.85 13.63 5.44 0.07 -9.78 16 14 N -0.58 -10.18 5.45 -10.48 -0.06 -10.23 16 15 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 16 C -0.02 -0.60 10.84 -17.02 -0.18 -0.79 16 17 N -0.26 -7.28 10.39 30.81 0.32 -6.96 16 18 N -0.14 -3.61 3.73 -11.40 -0.04 -3.65 16 19 C -0.32 -8.19 10.25 -14.82 -0.15 -8.34 16 20 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 21 C 0.05 1.15 5.50 -17.50 -0.10 1.05 16 22 N -0.77 -20.70 11.81 55.50 0.66 -20.04 16 23 Si 0.94 18.29 29.55 -169.99 -5.02 13.27 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 25 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 27 C -0.08 -1.73 11.50 -16.38 -0.19 -1.91 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.59 6.99 -51.93 -0.36 0.22 16 30 H 0.08 0.62 6.90 -51.93 -0.36 0.26 16 31 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.15 1.81 5.79 -52.48 -0.30 1.50 16 34 H 0.43 4.50 6.88 -40.82 -0.28 4.22 16 35 H 0.41 6.10 8.29 -40.82 -0.34 5.77 16 36 H 0.18 4.27 5.92 -52.48 -0.31 3.96 16 37 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.15 2.81 8.06 -52.49 -0.42 2.39 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -31.02 347.75 -7.00 -38.03 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -3.19 Total: 13.87 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.59 Total: -2.81 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.82 Total: -48.51 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.15 Total: -17.10 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.27 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.42 Total: -1.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.02 -7.00 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781979546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.374 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds