Wall clock time and date at job start Wed Apr 1 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 120.04171 * 2 1 4 4 Cl 1.73591 * 119.97681 * 359.97373 * 3 2 1 5 5 C 1.38389 * 120.04305 * 180.25484 * 3 2 1 6 6 C 1.38300 * 120.14126 * 359.44385 * 5 3 2 7 7 C 1.38077 * 120.08537 * 0.55426 * 6 5 3 8 8 C 1.38881 * 120.04296 * 179.97438 * 2 1 3 9 9 N 1.39725 * 120.07174 * 0.04364 * 8 2 1 10 10 C 1.34775 * 120.00275 * 204.83602 * 9 8 2 11 11 O 1.21397 * 120.00221 * 5.51832 * 10 9 8 12 12 C 1.49211 * 120.00438 * 185.52267 * 10 9 8 13 13 O 1.21414 * 119.99800 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00438 * 179.97438 * 12 10 9 15 15 C 1.40294 * 120.00137 * 179.97438 * 14 12 10 16 16 C 1.40721 * 126.10334 * 359.68884 * 15 14 12 17 17 N 1.30874 * 108.38221 * 179.85195 * 16 15 14 18 18 N 1.40071 * 108.43077 * 0.40728 * 17 16 15 19 19 C 1.37292 * 126.05376 * 179.72031 * 18 17 16 20 20 H 1.07995 * 120.00335 * 180.02562 * 19 18 17 21 21 C 1.39010 * 120.00120 * 0.02562 * 19 18 17 22 22 N 1.31281 * 119.99941 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00071 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47520 * 90.00124 * 23 21 19 25 25 H 1.48508 * 109.47306 * 210.00148 * 23 21 19 26 26 H 1.48501 * 109.47264 * 330.00023 * 23 21 19 27 27 C 1.35793 * 126.09941 * 179.97438 * 15 14 12 28 28 H 1.08999 * 109.47115 * 90.00324 * 1 2 3 29 29 H 1.09000 * 109.47565 * 210.00202 * 1 2 3 30 30 H 1.09001 * 109.47239 * 330.00421 * 1 2 3 31 31 H 1.08009 * 119.92705 * 179.70368 * 5 3 2 32 32 H 1.08000 * 119.94990 * 180.28391 * 6 5 3 33 33 H 1.08007 * 120.02215 * 179.70672 * 7 6 5 34 34 H 0.96998 * 120.00257 * 24.83475 * 9 8 2 35 35 H 0.97003 * 119.99533 * 359.97438 * 14 12 10 36 36 H 1.08006 * 125.80475 * 0.02562 * 16 15 14 37 37 H 0.96997 * 120.00351 * 180.02562 * 22 21 19 38 38 H 1.08002 * 126.25042 * 359.96210 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1967 0.0000 4 17 1.3316 2.7003 -0.0007 5 6 3.5829 1.1967 -0.0053 6 6 4.2774 0.0007 0.0009 7 6 3.5919 -1.1978 0.0010 8 6 2.2023 -1.2022 0.0005 9 7 1.5061 -2.4137 0.0002 10 6 2.0883 -3.5257 0.4908 11 8 3.1768 -3.4563 1.0239 12 6 1.3952 -4.8423 0.3789 13 8 0.3064 -4.9118 -0.1539 14 7 1.9777 -5.9545 0.8691 15 6 1.3257 -7.1923 0.7643 16 6 0.0651 -7.4187 0.1812 17 7 -0.2062 -8.6961 0.2679 18 7 0.8607 -9.3325 0.9150 19 6 0.9494 -10.6727 1.1996 20 1 1.8212 -11.0608 1.7052 21 6 -0.0829 -11.5301 0.8370 22 7 -1.1425 -11.0585 0.2219 23 14 0.0376 -13.3534 1.2248 24 1 -0.5492 -13.6146 2.5638 25 1 -0.7060 -14.1280 0.1989 26 1 1.4637 -13.7674 1.2202 27 6 1.7960 -8.3848 1.2123 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 4.1217 2.1328 -0.0102 32 1 5.3574 0.0044 0.0014 33 1 4.1353 -2.1312 0.0011 34 1 0.6037 -2.4544 -0.3532 35 1 2.8477 -5.8990 1.2944 36 1 -0.5691 -6.6667 -0.2646 37 1 -1.8630 -11.6567 -0.0308 38 1 2.7385 -8.5524 1.7125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781979546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:44 Heat of formation + Delta-G solvation = 24.539273 kcal Electronic energy + Delta-G solvation = -26333.919417 eV Core-core repulsion = 22203.920710 eV Total energy + Delta-G solvation = -4129.998707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.41457 -41.60158 -40.42891 -39.32296 -37.54534 -36.54198 -35.77427 -34.98543 -33.58736 -32.31251 -31.02246 -29.87961 -28.07842 -27.23398 -25.92048 -23.87444 -22.94525 -22.51513 -21.67085 -21.26400 -19.96563 -19.24663 -18.67397 -17.63884 -17.43568 -17.19191 -16.95320 -16.78584 -16.23997 -15.84961 -15.67197 -15.50242 -15.24725 -15.15144 -14.86621 -14.71467 -14.36898 -13.65569 -13.50989 -13.40560 -13.38816 -13.06076 -12.95628 -12.90685 -12.79593 -12.53123 -12.24682 -12.09186 -12.00397 -11.80554 -11.54339 -11.08333 -10.87935 -10.64862 -10.15246 -9.68069 -9.25895 -8.64547 -8.49477 -6.27314 -0.24398 0.12046 0.45994 0.93800 1.25125 1.28663 1.41783 1.58602 1.69562 1.95154 2.10566 2.45901 2.46675 2.61257 2.83769 3.07322 3.37705 3.69020 3.85213 3.97182 4.23963 4.30850 4.38909 4.50946 4.55733 4.62592 4.67111 4.91296 4.97029 4.99629 5.13673 5.14439 5.18299 5.20512 5.28279 5.37018 5.73801 5.85489 5.92524 6.19981 6.37454 6.57275 6.68498 6.98457 7.40297 7.61911 8.49583 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.036894 B = 0.001815 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.748091 B =15419.986215 C =16072.666660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C -0.027 4.027 4 Cl -0.058 7.058 5 C -0.119 4.119 6 C -0.088 4.088 7 C -0.136 4.136 8 C 0.140 3.860 9 N -0.631 5.631 10 C 0.528 3.472 11 O -0.508 6.508 12 C 0.490 3.510 13 O -0.539 6.539 14 N -0.576 5.576 15 C -0.058 4.058 16 C -0.046 4.046 17 N -0.308 5.308 18 N -0.163 5.163 19 C -0.352 4.352 20 H 0.142 0.858 21 C -0.005 4.005 22 N -0.820 5.820 23 Si 1.019 2.981 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.245 1.245 27 C -0.072 4.072 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.142 0.858 34 H 0.430 0.570 35 H 0.425 0.575 36 H 0.177 0.823 37 H 0.278 0.722 38 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.368 22.039 0.321 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.110 4.110 3 C -0.055 4.055 4 Cl -0.029 7.029 5 C -0.138 4.138 6 C -0.107 4.107 7 C -0.156 4.156 8 C 0.045 3.955 9 N -0.277 5.277 10 C 0.310 3.690 11 O -0.383 6.383 12 C 0.271 3.729 13 O -0.417 6.417 14 N -0.220 5.220 15 C -0.165 4.165 16 C -0.222 4.222 17 N -0.140 5.140 18 N 0.069 4.931 19 C -0.483 4.483 20 H 0.160 0.840 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.189 1.189 25 H -0.202 1.202 26 H -0.168 1.168 27 C -0.223 4.223 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.160 0.840 34 H 0.270 0.730 35 H 0.263 0.737 36 H 0.194 0.806 37 H 0.088 0.912 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 8.217 21.128 -0.044 22.670 hybrid contribution 0.130 0.010 0.216 0.252 sum 8.347 21.139 0.172 22.728 Atomic orbital electron populations 1.20913 0.88940 1.04207 1.04093 1.19551 0.97635 0.89935 1.03873 1.20632 0.92812 0.86401 1.05615 1.98365 1.76919 1.30796 1.96829 1.21365 0.91498 1.00307 1.00656 1.21290 1.01647 0.90167 0.97568 1.21622 0.92261 1.00913 1.00852 1.17565 0.91735 0.83887 1.02308 1.43033 1.19801 1.05813 1.59019 1.19811 0.85564 0.84943 0.78649 1.90724 1.20386 1.86110 1.41093 1.19864 0.86235 0.85166 0.81622 1.90678 1.21135 1.85919 1.43955 1.42002 1.21686 1.03660 1.54699 1.17249 0.97100 0.85181 1.16935 1.24274 0.97118 0.94680 1.06107 1.78177 1.10380 1.05414 1.20005 1.44850 1.09985 1.06536 1.31703 1.20655 1.08134 0.78876 1.40673 0.84029 1.26876 0.93828 1.06601 0.94432 1.70368 1.06221 1.38170 1.30034 0.84594 0.80128 0.73185 0.78341 1.18920 1.20182 1.16758 1.22017 0.99395 0.87705 1.13185 0.89152 0.91109 0.89655 0.82478 0.81991 0.84018 0.72958 0.73669 0.80643 0.91232 0.79374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.05 71.24 0.64 -1.25 16 2 C -0.11 -1.97 5.90 -19.71 -0.12 -2.09 16 3 C -0.03 -0.46 6.31 22.31 0.14 -0.32 16 4 Cl -0.06 -0.87 27.29 -2.72 -0.07 -0.94 16 5 C -0.12 -1.69 9.83 22.32 0.22 -1.47 16 6 C -0.09 -1.32 10.04 22.25 0.22 -1.10 16 7 C -0.14 -2.78 8.72 22.40 0.20 -2.59 16 8 C 0.14 2.97 6.41 38.21 0.24 3.21 16 9 N -0.63 -14.35 4.96 -304.97 -1.51 -15.86 16 10 C 0.53 14.34 7.68 87.20 0.67 15.01 16 11 O -0.51 -14.32 13.63 -3.39 -0.05 -14.37 16 12 C 0.49 16.27 7.85 87.20 0.68 16.96 16 13 O -0.54 -20.60 13.63 -3.45 -0.05 -20.64 16 14 N -0.58 -19.84 5.45 -305.41 -1.66 -21.51 16 15 C -0.06 -2.58 6.90 37.83 0.26 -2.32 16 16 C -0.05 -2.39 10.84 85.44 0.93 -1.46 16 17 N -0.31 -17.89 10.39 -56.43 -0.59 -18.48 16 18 N -0.16 -8.76 3.73 -189.98 -0.71 -9.47 16 19 C -0.35 -18.09 10.25 84.02 0.86 -17.23 16 20 H 0.14 6.28 7.83 -2.91 -0.02 6.26 16 21 C -0.01 -0.26 5.50 84.96 0.47 0.21 16 22 N -0.82 -46.02 11.81 21.67 0.26 -45.77 16 23 Si 1.02 37.49 29.55 68.60 2.03 39.52 16 24 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 25 H -0.28 -10.12 7.11 99.48 0.71 -9.41 16 26 H -0.24 -8.17 7.11 99.48 0.71 -7.46 16 27 C -0.07 -3.22 11.50 83.41 0.96 -2.26 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.09 6.99 -2.39 -0.02 1.07 16 30 H 0.08 1.20 6.90 -2.39 -0.02 1.18 16 31 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 32 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.14 3.20 5.79 -2.91 -0.02 3.18 16 34 H 0.43 8.85 6.88 -92.71 -0.64 8.22 16 35 H 0.43 11.99 8.29 -92.71 -0.77 11.22 16 36 H 0.18 8.85 5.92 -2.91 -0.02 8.84 16 37 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.19 6.65 8.06 -2.91 -0.02 6.63 16 Total: -1.00 -69.35 347.75 3.79 -65.56 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.24 Total: 38.66 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.38 Total: 3.31 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -4.22 Total: -111.09 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.09 Total: -35.02 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.07 Total: -0.94 kcal Total: -69.35 3.79 -65.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781979546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.102 kcal (2) G-P(sol) polarization free energy of solvation -69.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds