Wall clock time and date at job start Wed Apr 1 2020 04:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47073 * 316.29475 * 3 2 1 5 5 C 1.37097 * 120.00079 * 264.14038 * 4 3 2 6 6 H 1.07998 * 119.99976 * 197.43135 * 5 4 3 7 7 C 1.38952 * 119.99965 * 17.42461 * 5 4 3 8 8 N 1.31415 * 119.99632 * 21.53705 * 7 5 4 9 9 Si 1.86791 * 120.00137 * 201.54177 * 7 5 4 10 10 H 1.48500 * 109.47491 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47232 * 119.99987 * 9 7 5 12 12 H 1.48505 * 109.47280 * 240.00020 * 9 7 5 13 13 C 1.34779 * 120.00142 * 84.14340 * 4 3 2 14 14 O 1.21295 * 120.00115 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00020 * 359.97438 * 13 4 3 16 16 N 1.46497 * 109.47413 * 180.02562 * 15 13 4 17 17 C 1.34823 * 120.37383 * 270.80544 * 16 15 13 18 18 O 1.21291 * 120.21542 * 1.11613 * 17 16 15 19 19 C 1.50760 * 119.65070 * 181.68006 * 17 16 15 20 20 O 1.42995 * 109.63508 * 328.12391 * 19 17 16 21 21 C 1.36015 * 116.70772 * 46.39446 * 20 19 17 22 22 C 1.38394 * 120.64470 * 147.17794 * 21 20 19 23 23 C 1.38307 * 119.89250 * 179.81917 * 22 21 20 24 24 C 1.38385 * 120.24219 * 0.24503 * 23 22 21 25 25 Cl 1.73598 * 119.91384 * 179.97438 * 24 23 22 26 26 C 1.38390 * 120.17414 * 0.02562 * 24 23 22 27 27 C 1.38502 * 119.80354 * 359.97273 * 26 24 23 28 28 H 4.40638 * 5.51509 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47013 * 196.29266 * 3 2 1 30 30 H 1.09008 * 109.46973 * 76.29029 * 3 2 1 31 31 H 0.97002 * 119.99384 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47190 * 59.99703 * 15 13 4 33 33 H 1.09010 * 109.47336 * 300.00101 * 15 13 4 34 34 H 1.08994 * 109.44653 * 208.06966 * 19 17 16 35 35 H 1.09006 * 109.41741 * 88.15289 * 19 17 16 36 36 H 1.08001 * 120.04860 * 0.09487 * 22 21 20 37 37 H 1.07995 * 119.88110 * 180.27330 * 23 22 21 38 38 H 1.07994 * 120.09779 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9976 0.9544 5 6 3.4774 -0.6194 2.2268 6 1 4.0901 -1.2672 2.8362 7 6 3.0364 0.5974 2.7324 8 7 1.9847 1.1848 2.2071 9 14 3.9384 1.3983 4.1586 10 1 5.0813 0.5417 4.5651 11 1 4.4435 2.7305 3.7394 12 1 3.0080 1.5599 5.3047 13 6 3.2477 -2.2879 0.5814 14 8 3.6519 -3.1145 1.3717 15 6 2.8706 -2.7037 -0.8171 16 7 3.0810 -4.1453 -0.9714 17 6 4.2747 -4.6201 -1.3803 18 8 5.1908 -3.8573 -1.6044 19 6 4.4618 -6.1040 -1.5702 20 8 3.6451 -6.8147 -0.6361 21 6 2.3556 -6.3999 -0.5122 22 6 1.3477 -7.3048 -0.2283 23 6 0.0424 -6.8655 -0.1020 24 6 -0.2605 -5.5248 -0.2634 25 17 -1.9019 -4.9828 -0.1036 26 6 0.7416 -4.6153 -0.5529 27 6 2.0503 -5.0503 -0.6803 28 1 -1.0499 -0.0001 0.0004 29 1 3.0088 0.9872 0.2883 30 1 3.0094 -0.2428 -0.9985 31 1 1.6767 2.0341 2.5603 32 1 3.4902 -2.1668 -1.5353 33 1 1.8212 -2.4689 -0.9956 34 1 5.5082 -6.3616 -1.4067 35 1 4.1748 -6.3785 -2.5853 36 1 1.5809 -8.3517 -0.1012 37 1 -0.7433 -7.5711 0.1239 38 1 0.5037 -3.5694 -0.6790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798805363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:53 Heat of formation + Delta-G solvation = 8.916385 kcal Electronic energy + Delta-G solvation = -28484.349390 eV Core-core repulsion = 24321.380473 eV Total energy + Delta-G solvation = -4162.968918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60201 -39.10927 -38.56815 -37.69620 -36.43950 -35.60240 -34.94310 -32.24625 -31.33089 -30.72505 -29.96254 -29.46686 -26.89671 -26.31467 -24.47908 -23.57593 -22.60873 -19.98037 -19.28017 -19.06702 -17.99600 -17.32940 -17.11782 -16.72846 -16.40696 -15.81657 -15.48536 -15.14022 -14.80484 -14.79390 -14.50029 -14.22503 -14.05473 -13.76215 -13.62061 -13.08441 -12.79193 -12.71349 -12.62034 -12.32993 -12.05831 -11.72526 -11.59410 -11.43866 -11.08444 -11.05582 -10.96736 -10.55027 -10.47812 -10.34467 -9.90785 -9.47027 -9.36079 -9.00659 -8.81916 -8.53692 -7.95204 -7.78969 -6.40335 -3.92324 0.89117 1.03977 2.02840 2.32671 2.49770 3.09480 3.23106 3.24019 3.30371 3.45885 3.55971 3.77607 3.91162 3.98263 4.13244 4.50479 4.76823 4.81316 4.87740 4.95407 4.97477 4.99721 5.19851 5.31516 5.40896 5.46897 5.55809 5.61520 5.69368 5.88307 6.07530 6.15068 6.24407 6.37743 6.65435 6.82331 6.92926 7.27198 7.50665 7.77122 7.95779 8.34195 8.69538 9.04863 9.25467 9.78027 10.60293 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.004333 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.583073 B = 6460.180201 C = 7931.370584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.120 4.120 3 C 0.227 3.773 4 N -0.433 5.433 5 C -0.313 4.313 6 H 0.104 0.896 7 C 0.033 3.967 8 N -0.860 5.860 9 Si 0.921 3.079 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.435 3.565 14 O -0.569 6.569 15 C 0.092 3.908 16 N -0.525 5.525 17 C 0.492 3.508 18 O -0.502 6.502 19 C 0.055 3.945 20 O -0.298 6.298 21 C 0.083 3.917 22 C -0.098 4.098 23 C -0.109 4.109 24 C -0.023 4.023 25 Cl -0.063 7.063 26 C -0.115 4.115 27 C 0.132 3.868 28 H 0.200 0.800 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.269 0.731 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.098 0.902 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 -12.137 -10.651 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.122 4.122 3 C 0.104 3.896 4 N -0.152 5.152 5 C -0.440 4.440 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.498 5.498 9 Si 0.748 3.252 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.222 3.778 14 O -0.452 6.452 15 C -0.033 4.033 16 N -0.248 5.248 17 C 0.280 3.720 18 O -0.376 6.376 19 C -0.023 4.023 20 O -0.212 6.212 21 C 0.037 3.963 22 C -0.117 4.117 23 C -0.128 4.128 24 C -0.051 4.051 25 Cl -0.034 7.034 26 C -0.136 4.136 27 C 0.036 3.964 28 H 0.217 0.783 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.163 0.837 35 H 0.116 0.884 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.136 -11.971 -10.251 16.294 hybrid contribution -0.233 1.118 0.818 1.405 sum -4.369 -10.852 -9.433 15.028 Atomic orbital electron populations 1.24300 0.95352 1.02978 1.04476 1.23142 0.94287 0.98090 0.96652 1.18320 0.84381 0.96176 0.90712 1.43670 1.55645 1.04225 1.11665 1.19694 1.30099 1.03519 0.90686 0.87782 1.25293 0.95115 0.97782 0.98987 1.70089 1.19569 1.17731 1.42383 0.85945 0.79752 0.78999 0.80531 1.19175 1.20499 1.20809 1.20095 0.85647 0.83064 0.88992 1.90561 1.50564 1.50286 1.53831 1.21654 1.03646 0.78831 0.99158 1.45140 1.10921 1.06581 1.62133 1.21320 0.81669 0.92044 0.76965 1.90770 1.38947 1.59186 1.48703 1.23208 0.98004 0.86713 0.94355 1.86219 1.18859 1.56551 1.59614 1.18632 0.84727 0.90169 1.02804 1.20367 0.89612 0.99356 1.02378 1.20791 0.96444 0.93780 1.01823 1.20519 0.86001 0.93733 1.04827 1.98375 1.18430 1.90350 1.96249 1.20531 0.89418 1.00782 1.02895 1.17848 0.88690 0.88349 1.01529 0.78258 0.86832 0.92063 0.92079 0.87336 0.87807 0.83726 0.88425 0.83524 0.83997 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.92 19.25 29.55 0.57 -4.35 16 2 C -0.12 -2.55 10.88 -37.12 -0.40 -2.96 16 3 C 0.23 4.88 4.91 -6.83 -0.03 4.85 16 4 N -0.43 -10.84 2.60 -117.93 -0.31 -11.14 16 5 C -0.31 -8.59 9.33 -14.93 -0.14 -8.73 16 6 H 0.10 3.06 7.38 -52.49 -0.39 2.68 16 7 C 0.03 0.85 4.87 -17.47 -0.08 0.76 16 8 N -0.86 -22.11 9.48 55.50 0.53 -21.58 16 9 Si 0.92 20.45 29.60 -169.99 -5.03 15.42 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.44 10.62 7.63 -10.99 -0.08 10.54 16 14 O -0.57 -16.09 16.08 5.54 0.09 -16.00 16 15 C 0.09 1.74 4.27 -5.20 -0.02 1.72 16 16 N -0.52 -9.32 2.20 -114.57 -0.25 -9.58 16 17 C 0.49 8.40 7.66 -10.94 -0.08 8.32 16 18 O -0.50 -9.96 16.77 5.55 0.09 -9.87 16 19 C 0.06 0.67 7.17 36.03 0.26 0.93 16 20 O -0.30 -4.13 10.45 -19.79 -0.21 -4.33 16 21 C 0.08 1.19 6.45 -39.09 -0.25 0.94 16 22 C -0.10 -1.11 10.00 -39.50 -0.39 -1.50 16 23 C -0.11 -1.19 9.82 -39.50 -0.39 -1.58 16 24 C -0.02 -0.31 6.32 -39.47 -0.25 -0.56 16 25 Cl -0.06 -0.78 28.95 -51.86 -1.50 -2.28 16 26 C -0.11 -1.74 9.14 -39.43 -0.36 -2.10 16 27 C 0.13 2.12 6.39 -83.50 -0.53 1.58 16 28 H 0.20 3.17 7.80 -54.10 -0.42 2.75 16 29 H 0.11 2.58 6.44 -51.93 -0.33 2.25 16 30 H 0.06 1.09 6.69 -51.92 -0.35 0.74 16 31 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 32 H 0.11 1.91 6.77 -51.93 -0.35 1.55 16 33 H 0.10 1.77 5.32 -51.92 -0.28 1.49 16 34 H 0.15 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.14 2.21 6.12 -52.49 -0.32 1.89 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -33.99 348.74 -6.80 -40.79 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.27 Total: 5.45 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -2.20 Total: 7.86 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.03 Total: -42.30 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.02 Total: -30.20 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.99 -6.80 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.708 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds