Wall clock time and date at job start Wed Apr 1 2020 04:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47073 * 316.29475 * 3 2 1 5 5 C 1.37097 * 120.00079 * 264.14038 * 4 3 2 6 6 H 1.07998 * 119.99976 * 197.43135 * 5 4 3 7 7 C 1.38952 * 119.99965 * 17.42461 * 5 4 3 8 8 N 1.31415 * 119.99632 * 21.53705 * 7 5 4 9 9 Si 1.86791 * 120.00137 * 201.54177 * 7 5 4 10 10 H 1.48500 * 109.47491 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47232 * 119.99987 * 9 7 5 12 12 H 1.48505 * 109.47280 * 240.00020 * 9 7 5 13 13 C 1.34779 * 120.00142 * 84.14340 * 4 3 2 14 14 O 1.21295 * 120.00115 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00020 * 359.97438 * 13 4 3 16 16 N 1.46497 * 109.47413 * 180.02562 * 15 13 4 17 17 C 1.34823 * 120.37383 * 270.80544 * 16 15 13 18 18 O 1.21291 * 120.21542 * 1.11613 * 17 16 15 19 19 C 1.50760 * 119.65070 * 181.68006 * 17 16 15 20 20 O 1.42995 * 109.63508 * 328.12391 * 19 17 16 21 21 C 1.36015 * 116.70772 * 46.39446 * 20 19 17 22 22 C 1.38394 * 120.64470 * 147.17794 * 21 20 19 23 23 C 1.38307 * 119.89250 * 179.81917 * 22 21 20 24 24 C 1.38385 * 120.24219 * 0.24503 * 23 22 21 25 25 Cl 1.73598 * 119.91384 * 179.97438 * 24 23 22 26 26 C 1.38390 * 120.17414 * 0.02562 * 24 23 22 27 27 C 1.38502 * 119.80354 * 359.97273 * 26 24 23 28 28 H 4.40638 * 5.51509 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47013 * 196.29266 * 3 2 1 30 30 H 1.09008 * 109.46973 * 76.29029 * 3 2 1 31 31 H 0.97002 * 119.99384 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47190 * 59.99703 * 15 13 4 33 33 H 1.09010 * 109.47336 * 300.00101 * 15 13 4 34 34 H 1.08994 * 109.44653 * 208.06966 * 19 17 16 35 35 H 1.09006 * 109.41741 * 88.15289 * 19 17 16 36 36 H 1.08001 * 120.04860 * 0.09487 * 22 21 20 37 37 H 1.07995 * 119.88110 * 180.27330 * 23 22 21 38 38 H 1.07994 * 120.09779 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9976 0.9544 5 6 3.4774 -0.6194 2.2268 6 1 4.0901 -1.2672 2.8362 7 6 3.0364 0.5974 2.7324 8 7 1.9847 1.1848 2.2071 9 14 3.9384 1.3983 4.1586 10 1 5.0813 0.5417 4.5651 11 1 4.4435 2.7305 3.7394 12 1 3.0080 1.5599 5.3047 13 6 3.2477 -2.2879 0.5814 14 8 3.6519 -3.1145 1.3717 15 6 2.8706 -2.7037 -0.8171 16 7 3.0810 -4.1453 -0.9714 17 6 4.2747 -4.6201 -1.3803 18 8 5.1908 -3.8573 -1.6044 19 6 4.4618 -6.1040 -1.5702 20 8 3.6451 -6.8147 -0.6361 21 6 2.3556 -6.3999 -0.5122 22 6 1.3477 -7.3048 -0.2283 23 6 0.0424 -6.8655 -0.1020 24 6 -0.2605 -5.5248 -0.2634 25 17 -1.9019 -4.9828 -0.1036 26 6 0.7416 -4.6153 -0.5529 27 6 2.0503 -5.0503 -0.6803 28 1 -1.0499 -0.0001 0.0004 29 1 3.0088 0.9872 0.2883 30 1 3.0094 -0.2428 -0.9985 31 1 1.6767 2.0341 2.5603 32 1 3.4902 -2.1668 -1.5353 33 1 1.8212 -2.4689 -0.9956 34 1 5.5082 -6.3616 -1.4067 35 1 4.1748 -6.3785 -2.5853 36 1 1.5809 -8.3517 -0.1012 37 1 -0.7433 -7.5711 0.1239 38 1 0.5037 -3.5694 -0.6790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798805363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:52 Heat of formation + Delta-G solvation = -12.300191 kcal Electronic energy + Delta-G solvation = -28485.269410 eV Core-core repulsion = 24321.380473 eV Total energy + Delta-G solvation = -4163.888937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.76852 -40.64272 -39.98749 -38.80605 -37.57250 -37.15407 -36.46763 -34.12513 -33.10694 -31.76974 -31.06267 -30.80311 -28.46570 -27.79420 -26.23961 -24.71237 -23.75844 -21.45366 -20.58339 -20.27671 -19.77036 -18.72656 -18.48171 -18.24878 -17.89532 -16.96969 -16.73174 -16.66149 -16.32263 -16.21646 -15.87746 -15.69238 -15.33814 -15.21900 -14.71803 -14.48922 -14.35554 -14.12253 -13.98991 -13.67263 -13.59143 -13.19820 -13.03234 -12.84607 -12.61621 -12.53094 -12.20271 -12.19035 -11.94794 -11.64151 -11.26428 -11.19713 -11.07050 -10.72822 -10.47322 -9.91529 -9.75029 -8.96819 -8.38744 -5.99591 -0.15294 0.02006 0.99770 1.10565 1.29186 1.33502 1.39380 1.52260 1.77389 2.05785 2.22404 2.27786 2.33058 2.44109 2.86189 2.97006 3.08535 3.45916 3.73284 3.76423 3.86116 3.95053 3.98992 4.01276 4.10525 4.14276 4.33094 4.48281 4.59843 4.61904 4.82820 4.89175 5.08998 5.15941 5.37725 5.38233 5.40860 5.69971 5.95101 6.15191 6.34397 6.53100 7.05622 7.09337 7.29926 7.85123 8.59285 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.004333 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.583073 B = 6460.180201 C = 7931.370584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.161 4.161 3 C 0.229 3.771 4 N -0.443 5.443 5 C -0.353 4.353 6 H 0.069 0.931 7 C 0.009 3.991 8 N -0.864 5.864 9 Si 0.982 3.018 10 H -0.279 1.279 11 H -0.262 1.262 12 H -0.277 1.277 13 C 0.425 3.575 14 O -0.620 6.620 15 C 0.106 3.894 16 N -0.533 5.533 17 C 0.478 3.522 18 O -0.544 6.544 19 C 0.062 3.938 20 O -0.304 6.304 21 C 0.072 3.928 22 C -0.086 4.086 23 C -0.092 4.092 24 C -0.033 4.033 25 Cl -0.058 7.058 26 C -0.130 4.130 27 C 0.099 3.901 28 H 0.234 0.766 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.274 0.726 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.166 0.834 35 H 0.140 0.860 36 H 0.183 0.817 37 H 0.178 0.822 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.434 -13.465 -11.269 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.163 4.163 3 C 0.107 3.893 4 N -0.161 5.161 5 C -0.480 4.480 6 H 0.087 0.913 7 C -0.196 4.196 8 N -0.501 5.501 9 Si 0.806 3.194 10 H -0.204 1.204 11 H -0.187 1.187 12 H -0.202 1.202 13 C 0.213 3.787 14 O -0.507 6.507 15 C -0.019 4.019 16 N -0.256 5.256 17 C 0.269 3.731 18 O -0.421 6.421 19 C -0.016 4.016 20 O -0.219 6.219 21 C 0.026 3.974 22 C -0.105 4.105 23 C -0.111 4.111 24 C -0.060 4.060 25 Cl -0.029 7.029 26 C -0.151 4.151 27 C 0.004 3.996 28 H 0.251 0.749 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.183 0.817 35 H 0.157 0.843 36 H 0.201 0.799 37 H 0.195 0.805 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.802 -13.292 -10.900 18.143 hybrid contribution 0.143 1.503 1.035 1.831 sum -5.659 -11.789 -9.865 16.381 Atomic orbital electron populations 1.25121 0.96197 1.00975 1.02547 1.23255 0.94696 0.99906 0.98415 1.18356 0.85114 0.94477 0.91357 1.43859 1.55444 1.05280 1.11516 1.19503 1.31790 1.04525 0.92168 0.91298 1.25927 0.95349 0.97241 1.01049 1.70163 1.19419 1.17694 1.42798 0.85064 0.78233 0.78322 0.77784 1.20393 1.18656 1.20245 1.20992 0.84426 0.82453 0.90800 1.90502 1.52688 1.51605 1.55898 1.21422 1.04546 0.80535 0.95443 1.45246 1.11952 1.06135 1.62256 1.22363 0.80825 0.94123 0.75829 1.90734 1.40024 1.60657 1.50713 1.23464 0.99036 0.82850 0.96204 1.86197 1.18897 1.56346 1.60410 1.18991 0.85503 0.89893 1.03023 1.20822 0.88817 1.00565 1.00264 1.21238 0.97318 0.93283 0.99301 1.20688 0.85875 0.94455 1.04996 1.98375 1.17798 1.90497 1.96217 1.20538 0.89888 1.00714 1.03936 1.18135 0.88578 0.89037 1.03808 0.74914 0.88534 0.88834 0.91540 0.86401 0.86133 0.81677 0.84259 0.79940 0.80465 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.64 19.25 74.32 1.43 -7.21 16 2 C -0.16 -6.83 10.88 31.13 0.34 -6.49 16 3 C 0.23 10.06 4.91 84.58 0.42 10.47 16 4 N -0.44 -23.11 2.60 -645.39 -1.68 -24.79 16 5 C -0.35 -20.28 9.33 84.04 0.78 -19.50 16 6 H 0.07 4.36 7.38 -2.91 -0.02 4.34 16 7 C 0.01 0.46 4.87 84.93 0.41 0.87 16 8 N -0.86 -44.48 9.48 21.66 0.21 -44.28 16 9 Si 0.98 42.54 29.60 68.60 2.03 44.57 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 12 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.42 21.74 7.63 87.66 0.67 22.41 16 14 O -0.62 -37.10 16.08 -3.08 -0.05 -37.15 16 15 C 0.11 4.14 4.27 85.63 0.37 4.50 16 16 N -0.53 -19.32 2.20 -634.74 -1.40 -20.72 16 17 C 0.48 16.55 7.66 87.67 0.67 17.22 16 18 O -0.54 -22.31 16.77 -3.06 -0.05 -22.36 16 19 C 0.06 1.40 7.17 71.25 0.51 1.91 16 20 O -0.30 -7.89 10.45 -93.72 -0.98 -8.86 16 21 C 0.07 1.95 6.45 22.59 0.15 2.10 16 22 C -0.09 -1.66 10.00 22.32 0.22 -1.44 16 23 C -0.09 -1.73 9.82 22.32 0.22 -1.51 16 24 C -0.03 -0.80 6.32 22.34 0.14 -0.66 16 25 Cl -0.06 -1.33 28.95 -2.72 -0.08 -1.41 16 26 C -0.13 -3.89 9.14 22.37 0.20 -3.69 16 27 C 0.10 3.17 6.39 38.14 0.24 3.41 16 28 H 0.23 6.74 7.80 -4.42 -0.03 6.70 16 29 H 0.10 4.51 6.44 -2.39 -0.02 4.49 16 30 H 0.09 3.37 6.69 -2.38 -0.02 3.36 16 31 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 32 H 0.12 4.29 6.77 -2.39 -0.02 4.27 16 33 H 0.12 4.22 5.32 -2.38 -0.01 4.20 16 34 H 0.17 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.13 4.13 6.12 -2.91 -0.02 4.11 16 Total: -1.00 -78.05 348.74 5.91 -72.15 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 1.13 Total: 20.45 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 6.78 Total: 22.41 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -2.87 Total: -89.79 kcal Atomic # 8 Polarization: -67.30 SS G_CDS: -1.08 Total: -68.38 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -78.05 5.91 -72.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.846 kcal (2) G-P(sol) polarization free energy of solvation -78.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds