Wall clock time and date at job start Wed Apr 1 2020 05:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86805 * 119.99732 * 2 1 4 4 H 1.48506 * 109.46777 * 269.99705 * 3 2 1 5 5 H 1.48490 * 109.47136 * 30.00012 * 3 2 1 6 6 H 1.48496 * 109.46819 * 150.00399 * 3 2 1 7 7 C 1.38948 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 0.02562 * 7 2 1 9 9 N 1.37097 * 119.99682 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99944 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00037 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 10 15 15 O 1.21579 * 119.99978 * 0.02562 * 14 13 12 16 16 C 1.47656 * 120.00089 * 179.97438 * 14 13 12 17 17 C 1.41536 * 126.44562 * 179.97438 * 16 14 13 18 18 C 1.35357 * 105.55601 * 179.97438 * 17 16 14 19 19 N 1.35852 * 107.13012 * 0.02562 * 18 17 16 20 20 C 1.40131 * 124.95931 * 180.02562 * 19 18 17 21 21 C 1.38851 * 120.07489 * 359.72477 * 20 19 18 22 22 C 1.38107 * 119.94125 * 179.67948 * 21 20 19 23 23 C 1.38305 * 120.09422 * 0.61833 * 22 21 20 24 24 C 1.38245 * 120.15020 * 359.67523 * 23 22 21 25 25 C 1.38245 * 120.05361 * 0.02562 * 24 23 22 26 26 Cl 1.73607 * 120.04727 * 179.97438 * 25 24 23 27 27 N 1.28477 * 110.07847 * 359.74576 * 19 18 17 28 28 H 0.97002 * 120.00138 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00211 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47103 * 59.99751 * 12 10 9 31 31 H 1.09000 * 109.47247 * 299.99628 * 12 10 9 32 32 H 0.96999 * 120.00080 * 0.02562 * 13 12 10 33 33 H 1.07994 * 127.21466 * 0.02562 * 17 16 14 34 34 H 1.08000 * 126.43358 * 180.02562 * 18 17 16 35 35 H 1.08002 * 120.02545 * 359.97438 * 21 20 19 36 36 H 1.08001 * 119.94779 * 180.31965 * 22 21 20 37 37 H 1.07999 * 119.92553 * 179.70333 * 23 22 21 38 38 H 1.07991 * 119.97336 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 -0.0011 11 8 3.4474 -3.4209 -0.0020 12 6 5.5608 -2.3704 -0.0011 13 7 6.0491 -3.7517 -0.0017 14 6 7.3742 -3.9979 -0.0023 15 8 8.1643 -3.0738 -0.0019 16 6 7.8665 -5.3900 -0.0024 17 6 9.2202 -5.8032 -0.0035 18 6 9.1867 -7.1564 -0.0025 19 7 7.8790 -7.5243 -0.0014 20 6 7.4171 -8.8473 0.0003 21 6 8.3221 -9.9003 -0.0046 22 6 7.8639 -11.2031 0.0038 23 6 6.5050 -11.4603 0.0043 24 6 5.6004 -10.4149 0.0031 25 6 6.0523 -9.1083 0.0009 26 17 4.9162 -7.7956 -0.0012 27 7 7.1276 -6.4822 0.0036 28 1 -0.4850 0.8401 0.0004 29 1 3.8648 -0.3633 0.0004 30 1 5.9241 -1.8573 0.8894 31 1 5.9241 -1.8558 -0.8906 32 1 5.4188 -4.4890 -0.0024 33 1 10.0959 -5.1713 -0.0041 34 1 10.0395 -7.8190 -0.0025 35 1 9.3835 -9.7006 -0.0103 36 1 8.5678 -12.0222 0.0051 37 1 6.1496 -12.4802 0.0061 38 1 4.5400 -10.6189 0.0040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:20 Heat of formation + Delta-G solvation = 51.565503 kcal Electronic energy + Delta-G solvation = -26492.866399 eV Core-core repulsion = 22364.039637 eV Total energy + Delta-G solvation = -4128.826762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.11125 -39.80040 -39.28831 -38.16329 -36.56226 -34.51366 -34.04188 -33.71339 -31.78001 -31.72831 -30.76246 -29.87667 -27.90705 -25.03233 -24.05675 -23.68720 -22.06637 -21.22771 -19.97246 -19.59401 -18.98912 -18.54859 -17.39015 -16.91537 -16.46930 -15.84953 -15.69204 -15.34823 -15.24220 -15.12336 -14.78174 -14.47225 -14.01393 -13.98668 -13.87481 -13.55725 -13.30444 -13.00927 -12.59126 -12.44655 -12.14946 -12.08656 -11.98499 -11.76444 -11.72417 -11.21226 -10.61811 -10.52690 -10.16855 -10.10117 -10.02481 -9.66753 -9.50201 -9.35699 -8.90310 -8.73623 -8.56283 -8.27294 -6.37752 -3.90137 0.21757 0.58535 1.66587 1.84194 1.97666 2.10537 3.02064 3.06614 3.07509 3.14185 3.27641 3.46589 3.61077 3.87220 4.06269 4.17630 4.36998 4.45120 4.56865 4.66317 4.72674 4.79829 5.05997 5.16887 5.17402 5.36534 5.50414 5.50902 5.58333 5.70971 5.77764 5.79989 5.83490 6.02487 6.17644 6.54947 6.58770 7.46292 7.54088 7.85119 8.03344 8.34096 8.49151 8.84874 9.32861 9.66912 10.74480 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.002512 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.807079 B =11142.843550 C =12761.502437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.308 4.308 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.438 3.562 11 O -0.575 6.575 12 C 0.105 3.895 13 N -0.693 5.693 14 C 0.602 3.398 15 O -0.540 6.540 16 C -0.003 4.003 17 C -0.163 4.163 18 C -0.023 4.023 19 N -0.239 5.239 20 C 0.145 3.855 21 C -0.119 4.119 22 C -0.096 4.096 23 C -0.110 4.110 24 C -0.092 4.092 25 C -0.041 4.041 26 Cl -0.005 7.005 27 N -0.233 5.233 28 H 0.275 0.725 29 H 0.374 0.626 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.418 0.582 33 H 0.170 0.830 34 H 0.185 0.815 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.760 -22.210 -0.019 29.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.437 4.437 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.224 3.776 11 O -0.459 6.459 12 C -0.023 4.023 13 N -0.347 5.347 14 C 0.386 3.614 15 O -0.416 6.416 16 C -0.165 4.165 17 C -0.190 4.190 18 C -0.161 4.161 19 N -0.021 5.021 20 C 0.053 3.947 21 C -0.140 4.140 22 C -0.114 4.114 23 C -0.128 4.128 24 C -0.111 4.111 25 C -0.070 4.070 26 Cl 0.025 6.975 27 N -0.066 5.066 28 H 0.086 0.914 29 H 0.208 0.792 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.257 0.743 33 H 0.187 0.813 34 H 0.202 0.798 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 18.430 -22.370 -0.014 28.984 hybrid contribution 1.011 1.416 0.012 1.740 sum 19.441 -20.954 -0.001 28.584 Atomic orbital electron populations 1.69623 1.05700 1.27760 1.48347 1.25065 0.95536 0.98151 0.97199 0.86669 0.79931 0.83769 0.79127 1.19398 1.20009 1.19194 1.19440 0.78946 0.96794 1.48521 0.86097 1.42110 1.07688 1.06076 1.65607 1.19619 0.88005 0.84937 0.85024 1.90556 1.69125 1.30870 1.55340 1.21051 0.93991 0.83611 1.03644 1.45572 1.06718 1.09579 1.72800 1.16756 0.82242 0.85540 0.76850 1.90782 1.55719 1.43802 1.51267 1.22220 0.92394 0.92830 1.09035 1.21838 0.97286 0.93328 1.06571 1.22997 0.87416 0.96588 1.09147 1.42733 1.04612 1.03790 1.50963 1.17492 0.92092 0.80540 1.04570 1.20851 0.99329 0.91173 1.02636 1.21080 0.96102 0.95716 0.98537 1.21285 0.92870 0.99514 0.99161 1.21130 1.01525 0.89575 0.98845 1.20918 0.89454 0.91962 1.04712 1.98507 1.57873 1.45164 1.95986 1.74242 1.22242 0.92446 1.17662 0.91425 0.79238 0.89344 0.89330 0.74283 0.81292 0.79751 0.84076 0.84194 0.84296 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 13.96 55.50 0.77 -24.57 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 7 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 8 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 9 N -0.58 -13.77 5.09 -10.96 -0.06 -13.83 16 10 C 0.44 10.06 7.85 -10.99 -0.09 9.97 16 11 O -0.58 -15.20 15.24 5.54 0.08 -15.12 16 12 C 0.10 1.93 6.15 -5.19 -0.03 1.89 16 13 N -0.69 -12.69 5.52 -62.48 -0.35 -13.03 16 14 C 0.60 10.51 7.82 -12.42 -0.10 10.41 16 15 O -0.54 -10.23 16.92 5.30 0.09 -10.14 16 16 C 0.00 -0.04 7.13 -82.75 -0.59 -0.63 16 17 C -0.16 -1.91 10.80 -39.35 -0.42 -2.34 16 18 C -0.02 -0.22 10.78 -16.80 -0.18 -0.40 16 19 N -0.24 -2.85 3.52 -10.53 -0.04 -2.89 16 20 C 0.15 1.47 6.66 -83.57 -0.56 0.92 16 21 C -0.12 -0.76 9.43 -39.40 -0.37 -1.13 16 22 C -0.10 -0.45 10.04 -39.60 -0.40 -0.85 16 23 C -0.11 -0.58 10.04 -39.55 -0.40 -0.98 16 24 C -0.09 -0.71 9.83 -39.58 -0.39 -1.10 16 25 C -0.04 -0.45 6.34 -39.31 -0.25 -0.70 16 26 Cl 0.00 -0.07 25.94 -51.86 -1.35 -1.41 16 27 N -0.23 -3.46 8.40 33.42 0.28 -3.18 16 28 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.42 8.06 7.16 -40.82 -0.29 7.77 16 33 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.19 0.87 6.96 -52.49 -0.37 0.51 16 35 H 0.14 0.52 6.65 -52.49 -0.35 0.17 16 36 H 0.14 0.26 8.06 -52.49 -0.42 -0.17 16 37 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 38 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -35.42 352.34 -7.31 -42.73 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -3.33 Total: 14.18 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -4.02 Total: 7.36 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.62 Total: -57.51 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.17 Total: -25.26 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.35 Total: -1.41 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.42 -7.31 -42.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.296 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds