Wall clock time and date at job start Wed Apr 1 2020 05:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86805 * 119.99732 * 2 1 4 4 H 1.48506 * 109.46777 * 269.99705 * 3 2 1 5 5 H 1.48490 * 109.47136 * 30.00012 * 3 2 1 6 6 H 1.48496 * 109.46819 * 150.00399 * 3 2 1 7 7 C 1.38948 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 0.02562 * 7 2 1 9 9 N 1.37097 * 119.99682 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99944 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00037 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 10 15 15 O 1.21579 * 119.99978 * 0.02562 * 14 13 12 16 16 C 1.47656 * 120.00089 * 179.97438 * 14 13 12 17 17 C 1.41536 * 126.44562 * 179.97438 * 16 14 13 18 18 C 1.35357 * 105.55601 * 179.97438 * 17 16 14 19 19 N 1.35852 * 107.13012 * 0.02562 * 18 17 16 20 20 C 1.40131 * 124.95931 * 180.02562 * 19 18 17 21 21 C 1.38851 * 120.07489 * 359.72477 * 20 19 18 22 22 C 1.38107 * 119.94125 * 179.67948 * 21 20 19 23 23 C 1.38305 * 120.09422 * 0.61833 * 22 21 20 24 24 C 1.38245 * 120.15020 * 359.67523 * 23 22 21 25 25 C 1.38245 * 120.05361 * 0.02562 * 24 23 22 26 26 Cl 1.73607 * 120.04727 * 179.97438 * 25 24 23 27 27 N 1.28477 * 110.07847 * 359.74576 * 19 18 17 28 28 H 0.97002 * 120.00138 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00211 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47103 * 59.99751 * 12 10 9 31 31 H 1.09000 * 109.47247 * 299.99628 * 12 10 9 32 32 H 0.96999 * 120.00080 * 0.02562 * 13 12 10 33 33 H 1.07994 * 127.21466 * 0.02562 * 17 16 14 34 34 H 1.08000 * 126.43358 * 180.02562 * 18 17 16 35 35 H 1.08002 * 120.02545 * 359.97438 * 21 20 19 36 36 H 1.08001 * 119.94779 * 180.31965 * 22 21 20 37 37 H 1.07999 * 119.92553 * 179.70333 * 23 22 21 38 38 H 1.07991 * 119.97336 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 -0.0011 11 8 3.4474 -3.4209 -0.0020 12 6 5.5608 -2.3704 -0.0011 13 7 6.0491 -3.7517 -0.0017 14 6 7.3742 -3.9979 -0.0023 15 8 8.1643 -3.0738 -0.0019 16 6 7.8665 -5.3900 -0.0024 17 6 9.2202 -5.8032 -0.0035 18 6 9.1867 -7.1564 -0.0025 19 7 7.8790 -7.5243 -0.0014 20 6 7.4171 -8.8473 0.0003 21 6 8.3221 -9.9003 -0.0046 22 6 7.8639 -11.2031 0.0038 23 6 6.5050 -11.4603 0.0043 24 6 5.6004 -10.4149 0.0031 25 6 6.0523 -9.1083 0.0009 26 17 4.9162 -7.7956 -0.0012 27 7 7.1276 -6.4822 0.0036 28 1 -0.4850 0.8401 0.0004 29 1 3.8648 -0.3633 0.0004 30 1 5.9241 -1.8573 0.8894 31 1 5.9241 -1.8558 -0.8906 32 1 5.4188 -4.4890 -0.0024 33 1 10.0959 -5.1713 -0.0041 34 1 10.0395 -7.8190 -0.0025 35 1 9.3835 -9.7006 -0.0103 36 1 8.5678 -12.0222 0.0051 37 1 6.1496 -12.4802 0.0061 38 1 4.5400 -10.6189 0.0040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:19 Heat of formation + Delta-G solvation = 25.209066 kcal Electronic energy + Delta-G solvation = -26494.009300 eV Core-core repulsion = 22364.039637 eV Total energy + Delta-G solvation = -4129.969663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.97617 -41.02830 -40.27584 -39.81687 -37.41403 -36.34521 -35.43218 -34.77465 -33.86792 -32.41453 -31.49644 -30.74029 -29.36819 -26.65294 -25.17657 -24.46268 -22.92449 -21.97962 -21.51783 -21.16929 -20.53874 -19.64172 -18.68747 -17.60860 -17.40315 -17.37885 -16.96218 -16.71031 -16.64939 -16.32824 -15.78857 -15.50481 -15.37655 -15.06638 -14.86885 -14.66972 -14.41884 -14.37643 -14.06878 -13.96690 -13.69015 -13.14558 -12.98873 -12.60478 -12.56533 -12.47291 -12.41333 -12.01659 -11.61232 -11.46293 -11.31094 -11.08190 -10.71150 -10.38835 -10.34142 -10.27369 -9.95510 -9.33406 -8.47935 -6.10447 -0.44024 0.06524 0.62236 1.04913 1.24753 1.29431 1.32360 1.36696 1.42814 1.74619 1.94145 2.18897 2.25507 2.56231 2.80176 3.07733 3.10208 3.56821 3.73482 3.84152 3.95767 4.08843 4.19582 4.23599 4.30842 4.35284 4.37509 4.61362 4.67192 4.70470 4.95730 5.10265 5.15029 5.29550 5.32156 5.45730 5.58987 5.84332 5.89231 6.28031 6.45712 6.73720 6.74800 6.99268 7.25078 7.74715 8.68657 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.002512 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.807079 B =11142.843550 C =12761.502437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.232 1.232 7 C -0.333 4.333 8 H 0.060 0.940 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.615 6.615 12 C 0.115 3.885 13 N -0.703 5.703 14 C 0.605 3.395 15 O -0.559 6.559 16 C -0.039 4.039 17 C -0.176 4.176 18 C 0.000 4.000 19 N -0.238 5.238 20 C 0.110 3.890 21 C -0.108 4.108 22 C -0.083 4.083 23 C -0.097 4.097 24 C -0.105 4.105 25 C -0.068 4.068 26 Cl -0.054 7.054 27 N -0.263 5.263 28 H 0.282 0.718 29 H 0.393 0.607 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.412 0.588 33 H 0.184 0.816 34 H 0.239 0.761 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.172 0.828 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.207 -23.689 0.015 33.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.208 4.208 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.155 1.155 7 C -0.462 4.462 8 H 0.079 0.921 9 N -0.215 5.215 10 C 0.230 3.770 11 O -0.501 6.501 12 C -0.012 4.012 13 N -0.356 5.356 14 C 0.391 3.609 15 O -0.436 6.436 16 C -0.199 4.199 17 C -0.203 4.203 18 C -0.139 4.139 19 N -0.020 5.020 20 C 0.019 3.981 21 C -0.128 4.128 22 C -0.101 4.101 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.097 4.097 26 Cl -0.025 7.025 27 N -0.097 5.097 28 H 0.092 0.908 29 H 0.229 0.771 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.249 0.751 33 H 0.201 0.799 34 H 0.255 0.745 35 H 0.193 0.807 36 H 0.200 0.800 37 H 0.190 0.810 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 22.898 -23.862 0.022 33.071 hybrid contribution -0.378 1.487 -0.002 1.534 sum 22.520 -22.375 0.019 31.746 Atomic orbital electron populations 1.69787 1.08062 1.29540 1.49108 1.26105 0.96481 1.02678 0.95569 0.85418 0.79581 0.76782 0.80177 1.17940 1.19610 1.15531 1.19016 0.80908 0.95271 1.50961 0.92149 1.41887 1.06149 1.07273 1.66178 1.20484 0.90015 0.83964 0.82571 1.90547 1.70732 1.32485 1.56353 1.21023 0.89853 0.84505 1.05821 1.45677 1.07240 1.09145 1.73522 1.17050 0.81429 0.86651 0.75796 1.90745 1.55836 1.44737 1.52300 1.22091 0.94154 0.91861 1.11842 1.22107 0.96164 0.94663 1.07352 1.23759 0.87626 0.96425 1.06057 1.43007 1.05391 1.03907 1.49745 1.17969 0.92491 0.80593 1.07032 1.21346 1.00369 0.90567 1.00550 1.21642 0.96475 0.96155 0.95849 1.21743 0.92980 1.00134 0.96695 1.21346 1.02586 0.89143 0.99283 1.21191 0.89340 0.91638 1.07542 1.98484 1.59772 1.47757 1.96493 1.74206 1.23528 0.93227 1.18735 0.90840 0.77073 0.87043 0.86943 0.75063 0.79859 0.74499 0.80655 0.79963 0.81013 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.96 21.66 0.30 -55.37 16 2 C -0.01 -0.47 5.50 84.92 0.47 0.00 16 3 Si 0.96 39.16 27.74 68.60 1.90 41.06 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 6 H -0.23 -8.10 6.52 99.48 0.65 -7.45 16 7 C -0.33 -19.63 10.16 84.04 0.85 -18.78 16 8 H 0.06 4.21 7.39 -2.91 -0.02 4.19 16 9 N -0.57 -27.84 5.09 -306.98 -1.56 -29.40 16 10 C 0.44 20.93 7.85 87.66 0.69 21.62 16 11 O -0.62 -34.65 15.24 -3.08 -0.05 -34.70 16 12 C 0.12 4.22 6.15 85.63 0.53 4.74 16 13 N -0.70 -26.60 5.52 -469.87 -2.60 -29.20 16 14 C 0.60 21.54 7.82 86.73 0.68 22.21 16 15 O -0.56 -21.09 16.92 -3.96 -0.07 -21.15 16 16 C -0.04 -1.22 7.13 42.44 0.30 -0.92 16 17 C -0.18 -3.90 10.80 22.42 0.24 -3.66 16 18 C 0.00 -0.01 10.78 83.41 0.90 0.89 16 19 N -0.24 -5.46 3.52 -187.22 -0.66 -6.11 16 20 C 0.11 2.08 6.66 38.13 0.25 2.33 16 21 C -0.11 -0.92 9.43 22.39 0.21 -0.71 16 22 C -0.08 -0.36 10.04 22.25 0.22 -0.14 16 23 C -0.10 -0.67 10.04 22.29 0.22 -0.45 16 24 C -0.10 -1.53 9.83 22.27 0.22 -1.31 16 25 C -0.07 -1.50 6.34 22.44 0.14 -1.36 16 26 Cl -0.05 -1.67 25.94 -2.72 -0.07 -1.74 16 27 N -0.26 -8.07 8.40 -48.17 -0.40 -8.47 16 28 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.39 15.88 5.76 -92.71 -0.53 15.35 16 30 H 0.11 3.61 8.14 -2.38 -0.02 3.59 16 31 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 32 H 0.41 16.98 7.16 -92.71 -0.66 16.32 16 33 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 34 H 0.24 0.92 6.96 -2.91 -0.02 0.90 16 35 H 0.18 0.20 6.65 -2.91 -0.02 0.18 16 36 H 0.18 -0.64 8.06 -2.91 -0.02 -0.67 16 37 H 0.17 0.06 8.06 -2.91 -0.02 0.04 16 38 H 0.15 1.92 8.06 -2.92 -0.02 1.90 16 Total: -1.00 -86.68 352.34 2.63 -84.04 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -0.10 Total: 36.56 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 5.93 Total: 24.48 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -4.92 Total: -128.55 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -0.11 Total: -55.85 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.90 Total: 41.06 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.07 Total: -1.74 kcal Total: -86.68 2.63 -84.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.254 kcal (2) G-P(sol) polarization free energy of solvation -86.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds