Wall clock time and date at job start Wed Apr 1 2020 05:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99369 * 2 1 4 4 H 1.48507 * 109.47247 * 269.99962 * 3 2 1 5 5 H 1.48497 * 109.47311 * 29.99937 * 3 2 1 6 6 H 1.48501 * 109.47008 * 150.00321 * 3 2 1 7 7 C 1.37870 * 120.00668 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00129 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00240 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47040 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99664 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00178 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99771 * 179.97438 * 11 10 9 14 14 N 1.46506 * 109.47114 * 179.97438 * 13 11 10 15 15 C 1.40029 * 120.00044 * 180.02562 * 14 13 11 16 16 C 1.38711 * 120.07757 * 359.97438 * 15 14 13 17 17 C 1.38228 * 119.99335 * 180.02562 * 16 15 14 18 18 C 1.38354 * 120.14709 * 359.97176 * 17 16 15 19 19 Cl 1.73601 * 119.92179 * 180.02562 * 18 17 16 20 20 C 1.38373 * 120.15349 * 359.77591 * 18 17 16 21 21 C 1.38510 * 120.00500 * 0.49886 * 20 18 17 22 22 O 1.36016 * 120.07321 * 179.74418 * 21 20 18 23 23 C 1.42903 * 116.99777 * 359.73368 * 22 21 20 24 24 C 1.53000 * 109.46726 * 179.97438 * 23 22 21 25 25 F 1.39904 * 109.47059 * 299.99479 * 24 23 22 26 26 F 1.39895 * 109.47411 * 59.99737 * 24 23 22 27 27 H 0.96996 * 120.00587 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47184 * 59.99314 * 9 7 2 29 29 H 1.09000 * 109.46698 * 299.99769 * 9 7 2 30 30 H 0.96998 * 120.00171 * 359.97438 * 10 9 7 31 31 H 1.09003 * 109.47142 * 60.00038 * 13 11 10 32 32 H 1.09000 * 109.47288 * 299.99586 * 13 11 10 33 33 H 0.97005 * 119.99811 * 359.97438 * 14 13 11 34 34 H 1.08003 * 120.00581 * 0.04463 * 16 15 14 35 35 H 1.07997 * 119.92745 * 180.02562 * 17 16 15 36 36 H 1.08002 * 119.99850 * 180.25495 * 20 18 17 37 37 H 1.09002 * 109.47382 * 59.99685 * 23 22 21 38 38 H 1.09001 * 109.46938 * 299.99671 * 23 22 21 39 39 H 1.09004 * 109.46724 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4648 -2.1293 -0.0005 9 6 3.5117 -1.1938 0.0000 10 7 4.0001 -2.5750 -0.0001 11 6 5.3252 -2.8211 0.0009 12 8 6.1132 -1.8992 0.0014 13 6 5.8276 -4.2419 0.0014 14 7 7.2927 -4.2418 0.0018 15 6 7.9929 -5.4544 0.0018 16 6 7.3011 -6.6567 0.0018 17 6 7.9941 -7.8527 0.0023 18 6 9.3776 -7.8541 0.0021 19 17 10.2421 -9.3596 0.0020 20 6 10.0739 -6.6583 -0.0032 21 6 9.3859 -5.4561 0.0021 22 8 10.0690 -4.2799 0.0021 23 6 11.4959 -4.3584 0.0025 24 6 12.0842 -2.9460 0.0018 25 9 11.6550 -2.2626 -1.1410 26 9 11.6545 -2.2613 1.1435 27 1 -0.4851 0.8400 -0.0004 28 1 3.8746 -0.6805 0.8904 29 1 3.8752 -0.6794 -0.8895 30 1 3.3698 -3.3124 -0.0001 31 1 5.4650 -4.7558 -0.8889 32 1 5.4637 -4.7557 0.8911 33 1 7.7776 -3.4016 0.0014 34 1 6.2211 -6.6583 0.0012 35 1 7.4544 -8.7881 0.0019 36 1 11.1539 -6.6623 -0.0075 37 1 11.8307 -4.8915 -0.8874 38 1 11.8302 -4.8912 0.8926 39 1 13.1726 -3.0059 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809194542.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:00 Heat of formation + Delta-G solvation = -154.881240 kcal Electronic energy + Delta-G solvation = -27212.945383 eV Core-core repulsion = 22624.477232 eV Total energy + Delta-G solvation = -4588.468151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.23417 -47.26657 -40.66564 -39.24657 -38.00912 -36.76488 -35.18826 -34.37507 -32.45783 -31.39776 -30.43123 -29.66121 -28.18471 -26.20147 -24.30056 -22.53267 -22.36737 -21.50964 -20.08981 -19.14880 -18.13259 -17.83449 -17.35658 -17.19617 -16.65588 -16.42284 -16.00203 -15.69921 -15.43048 -15.39283 -15.27340 -14.43887 -14.30247 -14.15661 -13.81316 -13.74397 -13.62770 -13.60381 -13.26253 -12.85879 -12.78853 -12.42179 -12.34575 -12.20496 -12.01968 -11.72085 -11.41781 -11.24504 -11.14595 -11.08923 -10.81769 -10.07732 -10.02498 -9.57326 -9.46361 -8.95502 -8.84146 -8.30754 -7.39844 -6.26319 -4.29460 0.98699 1.11869 1.96329 2.48406 2.99204 3.09975 3.24024 3.31169 3.34387 3.38836 3.40768 3.71285 3.91643 3.98424 4.29196 4.36332 4.45198 4.57884 4.78313 4.88130 4.89443 5.03444 5.08805 5.16433 5.23807 5.30994 5.34328 5.55593 5.82759 6.03210 6.25815 6.62333 6.72618 6.98549 7.05126 7.15255 7.29866 7.66003 8.01807 8.39001 8.63707 8.76523 9.32994 10.85414 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.002457 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.712952 B =11394.594567 C =13746.905465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.698 5.698 11 C 0.494 3.506 12 O -0.551 6.551 13 C 0.102 3.898 14 N -0.721 5.721 15 C 0.217 3.783 16 C -0.164 4.164 17 C -0.085 4.085 18 C -0.063 4.063 19 Cl -0.080 7.080 20 C -0.152 4.152 21 C 0.063 3.937 22 O -0.299 6.299 23 C 0.008 3.992 24 C 0.273 3.727 25 F -0.196 7.196 26 F -0.195 7.195 27 H 0.268 0.732 28 H 0.027 0.973 29 H 0.023 0.977 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.420 0.580 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.704 -17.303 0.028 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.347 5.347 11 C 0.278 3.722 12 O -0.430 6.430 13 C -0.027 4.027 14 N -0.353 5.353 15 C 0.111 3.889 16 C -0.188 4.188 17 C -0.104 4.104 18 C -0.092 4.092 19 Cl -0.052 7.052 20 C -0.172 4.172 21 C 0.014 3.986 22 O -0.213 6.213 23 C -0.069 4.069 24 C 0.219 3.781 25 F -0.177 7.177 26 F -0.177 7.177 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.233 0.767 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.259 0.741 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.824 -16.355 0.031 29.727 hybrid contribution 0.330 0.610 -0.025 0.693 sum 25.153 -15.745 0.006 29.675 Atomic orbital electron populations 1.69870 1.06207 1.27526 1.49157 1.24788 0.94798 0.99187 0.93782 0.86824 0.80568 0.83237 0.79103 1.19804 1.20831 1.18512 1.21059 0.88350 0.95300 1.53658 0.90139 1.19546 0.95397 0.78234 0.96992 1.46113 1.05262 1.11470 1.71853 1.20341 0.83701 0.90352 0.77787 1.90681 1.55378 1.45835 1.51077 1.21156 0.81867 0.96195 1.03437 1.44443 1.04401 1.06154 1.80283 1.17257 0.87403 0.87433 0.96789 1.20486 1.00197 0.89419 1.08670 1.20718 0.91649 0.98485 0.99571 1.20228 0.92089 0.86130 1.10794 1.98347 1.77162 1.32316 1.97336 1.20716 0.99989 0.90037 1.06457 1.18133 0.89624 0.84542 1.06288 1.86123 1.17764 1.27521 1.89933 1.23996 0.81344 0.96827 1.04724 1.22008 0.98426 0.85615 0.72027 1.93053 1.92145 1.81756 1.50732 1.93051 1.92121 1.81691 1.50812 0.92175 0.95514 0.95960 0.76687 0.89159 0.89149 0.74054 0.84104 0.84771 0.84716 0.88934 0.88923 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.55 -14.60 9.83 -34.44 -0.34 -14.94 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 9 C 0.22 5.26 4.50 -5.19 -0.02 5.24 16 10 N -0.70 -13.24 5.55 -61.47 -0.34 -13.58 16 11 C 0.49 8.80 7.90 -10.99 -0.09 8.71 16 12 O -0.55 -12.04 15.67 5.55 0.09 -11.96 16 13 C 0.10 1.27 5.40 -5.19 -0.03 1.24 16 14 N -0.72 -9.74 5.71 -59.65 -0.34 -10.09 16 15 C 0.22 2.57 6.67 -83.54 -0.56 2.01 16 16 C -0.16 -1.59 9.31 -39.41 -0.37 -1.96 16 17 C -0.08 -0.76 9.82 -39.54 -0.39 -1.15 16 18 C -0.06 -0.60 6.32 -39.49 -0.25 -0.84 16 19 Cl -0.08 -0.69 28.95 -51.86 -1.50 -2.19 16 20 C -0.15 -1.40 8.82 -39.43 -0.35 -1.75 16 21 C 0.06 0.70 6.70 -39.09 -0.26 0.44 16 22 O -0.30 -3.45 9.27 -19.79 -0.18 -3.63 16 23 C 0.01 0.05 4.97 37.16 0.18 0.24 16 24 C 0.27 2.00 5.63 37.16 0.21 2.21 16 25 F -0.20 -2.13 17.28 2.25 0.04 -2.09 16 26 F -0.20 -2.13 17.28 2.25 0.04 -2.09 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 29 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 30 H 0.40 6.43 8.32 -40.82 -0.34 6.09 16 31 H 0.09 0.93 7.95 -51.93 -0.41 0.51 16 32 H 0.09 0.93 7.95 -51.93 -0.41 0.52 16 33 H 0.42 6.66 6.80 -40.82 -0.28 6.38 16 34 H 0.14 1.11 6.74 -52.48 -0.35 0.76 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.14 0.92 6.30 -52.49 -0.33 0.59 16 37 H 0.09 0.44 7.65 -51.93 -0.40 0.04 16 38 H 0.09 0.44 7.68 -51.93 -0.40 0.04 16 39 H 0.13 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -34.01 359.72 -7.14 -41.16 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.11 Total: 6.28 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.35 Total: 1.52 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.09 Total: -48.97 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.10 Total: -15.59 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.08 Total: -4.18 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.01 -7.14 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809194542.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.726 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds