Wall clock time and date at job start Wed Apr 1 2020 05:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99369 * 2 1 4 4 H 1.48507 * 109.47247 * 269.99962 * 3 2 1 5 5 H 1.48497 * 109.47311 * 29.99937 * 3 2 1 6 6 H 1.48501 * 109.47008 * 150.00321 * 3 2 1 7 7 C 1.37870 * 120.00668 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00129 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00240 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47040 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99664 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00178 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99771 * 179.97438 * 11 10 9 14 14 N 1.46506 * 109.47114 * 179.97438 * 13 11 10 15 15 C 1.40029 * 120.00044 * 180.02562 * 14 13 11 16 16 C 1.38711 * 120.07757 * 359.97438 * 15 14 13 17 17 C 1.38228 * 119.99335 * 180.02562 * 16 15 14 18 18 C 1.38354 * 120.14709 * 359.97176 * 17 16 15 19 19 Cl 1.73601 * 119.92179 * 180.02562 * 18 17 16 20 20 C 1.38373 * 120.15349 * 359.77591 * 18 17 16 21 21 C 1.38510 * 120.00500 * 0.49886 * 20 18 17 22 22 O 1.36016 * 120.07321 * 179.74418 * 21 20 18 23 23 C 1.42903 * 116.99777 * 359.73368 * 22 21 20 24 24 C 1.53000 * 109.46726 * 179.97438 * 23 22 21 25 25 F 1.39904 * 109.47059 * 299.99479 * 24 23 22 26 26 F 1.39895 * 109.47411 * 59.99737 * 24 23 22 27 27 H 0.96996 * 120.00587 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47184 * 59.99314 * 9 7 2 29 29 H 1.09000 * 109.46698 * 299.99769 * 9 7 2 30 30 H 0.96998 * 120.00171 * 359.97438 * 10 9 7 31 31 H 1.09003 * 109.47142 * 60.00038 * 13 11 10 32 32 H 1.09000 * 109.47288 * 299.99586 * 13 11 10 33 33 H 0.97005 * 119.99811 * 359.97438 * 14 13 11 34 34 H 1.08003 * 120.00581 * 0.04463 * 16 15 14 35 35 H 1.07997 * 119.92745 * 180.02562 * 17 16 15 36 36 H 1.08002 * 119.99850 * 180.25495 * 20 18 17 37 37 H 1.09002 * 109.47382 * 59.99685 * 23 22 21 38 38 H 1.09001 * 109.46938 * 299.99671 * 23 22 21 39 39 H 1.09004 * 109.46724 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4648 -2.1293 -0.0005 9 6 3.5117 -1.1938 0.0000 10 7 4.0001 -2.5750 -0.0001 11 6 5.3252 -2.8211 0.0009 12 8 6.1132 -1.8992 0.0014 13 6 5.8276 -4.2419 0.0014 14 7 7.2927 -4.2418 0.0018 15 6 7.9929 -5.4544 0.0018 16 6 7.3011 -6.6567 0.0018 17 6 7.9941 -7.8527 0.0023 18 6 9.3776 -7.8541 0.0021 19 17 10.2421 -9.3596 0.0020 20 6 10.0739 -6.6583 -0.0032 21 6 9.3859 -5.4561 0.0021 22 8 10.0690 -4.2799 0.0021 23 6 11.4959 -4.3584 0.0025 24 6 12.0842 -2.9460 0.0018 25 9 11.6550 -2.2626 -1.1410 26 9 11.6545 -2.2613 1.1435 27 1 -0.4851 0.8400 -0.0004 28 1 3.8746 -0.6805 0.8904 29 1 3.8752 -0.6794 -0.8895 30 1 3.3698 -3.3124 -0.0001 31 1 5.4650 -4.7558 -0.8889 32 1 5.4637 -4.7557 0.8911 33 1 7.7776 -3.4016 0.0014 34 1 6.2211 -6.6583 0.0012 35 1 7.4544 -8.7881 0.0019 36 1 11.1539 -6.6623 -0.0075 37 1 11.8307 -4.8915 -0.8874 38 1 11.8302 -4.8912 0.8926 39 1 13.1726 -3.0059 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809194542.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:59 Heat of formation + Delta-G solvation = -179.247044 kcal Electronic energy + Delta-G solvation = -27214.001963 eV Core-core repulsion = 22624.477232 eV Total energy + Delta-G solvation = -4589.524731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.91690 -47.98390 -41.43680 -40.64520 -38.74752 -37.52159 -36.37674 -35.82793 -34.45854 -32.04862 -31.29933 -30.65066 -29.62974 -27.33446 -25.00684 -24.03161 -23.20598 -22.50593 -21.52712 -19.95849 -19.27306 -18.58369 -18.48765 -18.00323 -17.71285 -17.54528 -16.85895 -16.84926 -16.67477 -16.54448 -16.20247 -15.82993 -15.28527 -15.06758 -14.98736 -14.82349 -14.50994 -14.43109 -14.35576 -14.24965 -14.03974 -13.73800 -13.46554 -13.10460 -12.93225 -12.86980 -12.72242 -12.38513 -11.98157 -11.96314 -11.93161 -11.80827 -11.67178 -11.01221 -10.93597 -10.86282 -10.01736 -9.65066 -8.41260 -8.22825 -6.48071 0.27960 0.37950 1.26412 1.30947 1.34051 1.45638 1.58071 1.86060 2.06564 2.26413 2.67117 2.68165 2.82452 2.94244 3.29001 3.48107 3.75242 3.76194 3.93562 4.02817 4.14363 4.28811 4.30028 4.37678 4.38640 4.38904 4.68031 4.75471 4.84203 4.99721 5.12548 5.23690 5.32018 5.43229 5.58047 5.89601 6.06430 6.34787 6.52803 6.61004 6.77242 7.12661 7.31016 8.73213 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.002457 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.712952 B =11394.594567 C =13746.905465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.028 3.972 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.231 3.769 10 N -0.697 5.697 11 C 0.494 3.506 12 O -0.594 6.594 13 C 0.116 3.884 14 N -0.736 5.736 15 C 0.191 3.809 16 C -0.160 4.160 17 C -0.088 4.088 18 C -0.068 4.068 19 Cl -0.073 7.073 20 C -0.150 4.150 21 C 0.051 3.949 22 O -0.331 6.331 23 C -0.001 4.001 24 C 0.260 3.740 25 F -0.221 7.221 26 F -0.221 7.221 27 H 0.272 0.728 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.414 0.586 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.405 0.595 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.419 -19.178 -0.008 32.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.107 3.893 10 N -0.347 5.347 11 C 0.281 3.719 12 O -0.475 6.475 13 C -0.011 4.011 14 N -0.369 5.369 15 C 0.087 3.913 16 C -0.183 4.183 17 C -0.107 4.107 18 C -0.096 4.096 19 Cl -0.044 7.044 20 C -0.170 4.170 21 C 0.003 3.997 22 O -0.245 6.245 23 C -0.077 4.077 24 C 0.208 3.792 25 F -0.202 7.202 26 F -0.202 7.202 27 H 0.082 0.918 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.251 0.749 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.242 0.758 34 H 0.178 0.822 35 H 0.172 0.828 36 H 0.175 0.825 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 26.545 -18.304 -0.006 32.244 hybrid contribution -0.123 1.054 -0.012 1.061 sum 26.423 -17.250 -0.019 31.555 Atomic orbital electron populations 1.69966 1.07589 1.28594 1.50651 1.25557 0.95506 1.02521 0.93694 0.85909 0.79231 0.79668 0.79377 1.19107 1.19853 1.18680 1.21276 0.89781 0.94708 1.52534 0.91767 1.19117 0.93507 0.80939 0.95716 1.45899 1.06404 1.09999 1.72387 1.21217 0.82528 0.92338 0.75820 1.90662 1.56291 1.47923 1.52650 1.21175 0.81723 0.92159 1.06086 1.44434 1.04416 1.06182 1.81828 1.17567 0.88002 0.87314 0.98409 1.20735 1.01182 0.88819 1.07554 1.20982 0.91717 0.99063 0.98918 1.20437 0.92544 0.86510 1.10158 1.98353 1.77017 1.31754 1.97268 1.20921 1.01138 0.89296 1.05618 1.18342 0.89759 0.85075 1.06569 1.86094 1.20095 1.28217 1.90136 1.24353 0.79343 0.97061 1.06917 1.22835 1.01277 0.84999 0.70118 1.92995 1.92678 1.82420 1.52134 1.92993 1.92656 1.82358 1.52214 0.91834 0.96979 0.97069 0.74941 0.86274 0.86282 0.75813 0.82244 0.82812 0.82523 0.86630 0.86628 0.79691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.96 21.44 0.30 -54.61 16 2 C 0.03 1.56 5.47 84.65 0.46 2.02 16 3 Si 0.93 43.99 27.47 68.60 1.88 45.88 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -12.34 6.54 99.48 0.65 -11.68 16 7 C -0.55 -29.41 9.83 25.60 0.25 -29.16 16 8 H 0.06 3.59 7.84 -2.91 -0.02 3.57 16 9 C 0.23 11.09 4.50 85.63 0.39 11.47 16 10 N -0.70 -26.07 5.55 -466.78 -2.59 -28.66 16 11 C 0.49 17.33 7.90 87.66 0.69 18.02 16 12 O -0.59 -26.35 15.67 -3.04 -0.05 -26.39 16 13 C 0.12 2.68 5.40 85.63 0.46 3.15 16 14 N -0.74 -19.43 5.71 -342.64 -1.96 -21.38 16 15 C 0.19 4.27 6.67 38.20 0.25 4.53 16 16 C -0.16 -2.72 9.31 22.38 0.21 -2.51 16 17 C -0.09 -1.34 9.82 22.29 0.22 -1.12 16 18 C -0.07 -1.10 6.32 22.33 0.14 -0.96 16 19 Cl -0.07 -1.06 28.95 -2.72 -0.08 -1.14 16 20 C -0.15 -2.44 8.82 22.37 0.20 -2.25 16 21 C 0.05 1.08 6.70 22.59 0.15 1.23 16 22 O -0.33 -7.49 9.27 -93.73 -0.87 -8.36 16 23 C 0.00 -0.02 4.97 71.98 0.36 0.34 16 24 C 0.26 3.50 5.63 71.98 0.41 3.91 16 25 F -0.22 -4.80 17.28 44.97 0.78 -4.03 16 26 F -0.22 -4.81 17.28 44.97 0.78 -4.03 16 27 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 29 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 30 H 0.41 12.90 8.32 -92.71 -0.77 12.13 16 31 H 0.12 2.10 7.95 -2.39 -0.02 2.08 16 32 H 0.12 2.10 7.95 -2.39 -0.02 2.08 16 33 H 0.41 13.14 6.80 -92.70 -0.63 12.51 16 34 H 0.16 1.98 6.74 -2.91 -0.02 1.96 16 35 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.16 1.70 6.30 -2.91 -0.02 1.68 16 37 H 0.12 0.82 7.65 -2.39 -0.02 0.80 16 38 H 0.12 0.83 7.68 -2.39 -0.02 0.81 16 39 H 0.19 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -75.95 359.72 2.06 -73.89 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.32 Total: 20.17 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 4.19 Total: 8.66 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -4.25 Total: -104.65 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.92 Total: -34.75 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 1.55 Total: -8.05 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -75.95 2.06 -73.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809194542.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.358 kcal (2) G-P(sol) polarization free energy of solvation -75.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds