Wall clock time and date at job start Wed Apr 1 2020 05:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47061 * 240.00082 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.46992 * 179.97438 * 13 11 10 15 15 C 1.39966 * 120.00127 * 179.97438 * 14 13 11 16 16 C 1.38759 * 120.08303 * 359.72374 * 15 14 13 17 17 C 1.38208 * 120.00406 * 179.74562 * 16 15 14 18 18 C 1.38261 * 120.16408 * 0.55335 * 17 16 15 19 19 C 1.38367 * 120.16944 * 359.70571 * 18 17 16 20 20 Cl 1.73602 * 120.00354 * 180.02562 * 19 18 17 21 21 C 1.38609 * 119.99644 * 0.02562 * 19 18 17 22 22 O 1.36036 * 120.08438 * 180.02562 * 21 19 18 23 23 C 1.42901 * 116.99865 * 269.97624 * 22 21 19 24 24 C 1.52997 * 109.47163 * 179.97438 * 23 22 21 25 25 F 1.39901 * 109.47281 * 299.99889 * 24 23 22 26 26 F 1.39900 * 109.47260 * 60.00040 * 24 23 22 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 29 29 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 30 30 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 31 31 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 32 32 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 33 33 H 0.97000 * 120.00420 * 0.02562 * 14 13 11 34 34 H 1.08006 * 119.99916 * 0.02562 * 16 15 14 35 35 H 1.07996 * 119.92247 * 180.25673 * 17 16 15 36 36 H 1.08006 * 119.91531 * 179.72099 * 18 17 16 37 37 H 1.09005 * 109.47024 * 299.99633 * 23 22 21 38 38 H 1.08996 * 109.46996 * 60.00105 * 23 22 21 39 39 H 1.09001 * 109.47146 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 2.0007 -7.2975 0.0032 15 6 2.7005 -8.5096 0.0042 16 6 4.0881 -8.5117 -0.0004 17 6 4.7775 -9.7095 0.0059 18 6 4.0880 -10.9079 0.0053 19 6 2.7043 -10.9141 0.0046 20 17 1.8429 -12.4213 0.0045 21 6 2.0060 -9.7168 0.0038 22 8 0.6457 -9.7207 0.0036 23 6 -0.0029 -9.7228 -1.2698 24 6 -1.5197 -9.7278 -1.0696 25 9 -1.8919 -10.8714 -0.3549 26 9 -1.8995 -8.5869 -0.3546 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 3.1568 -3.4354 0.0021 31 1 3.3612 -5.9713 -0.8858 32 1 3.3585 -5.9707 0.8942 33 1 1.0307 -7.2975 0.0017 34 1 4.6295 -7.5771 -0.0045 35 1 5.8575 -9.7095 0.0064 36 1 4.6308 -11.8417 0.0057 37 1 0.2875 -8.8319 -1.8268 38 1 0.2927 -10.6119 -1.8266 39 1 -2.0143 -9.7289 -2.0409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809194627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:02 Heat of formation + Delta-G solvation = -158.041527 kcal Electronic energy + Delta-G solvation = -27661.764700 eV Core-core repulsion = 23073.159509 eV Total energy + Delta-G solvation = -4588.605191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.98450 -47.01048 -40.48460 -39.08851 -37.65200 -36.80676 -35.29105 -34.30626 -32.47042 -31.24784 -30.14674 -29.39405 -27.82512 -26.10109 -23.59321 -22.97489 -22.42187 -21.79794 -19.95647 -18.85686 -18.02568 -17.50894 -17.21161 -16.98190 -16.71678 -16.55396 -15.65501 -15.47757 -15.42930 -15.01679 -14.68055 -14.60393 -14.41385 -14.20203 -13.70031 -13.65377 -13.52741 -13.34697 -13.05848 -12.79851 -12.51319 -12.23464 -12.06105 -12.01882 -11.92717 -11.61249 -11.32321 -11.08195 -11.02659 -10.93752 -10.40484 -10.32278 -10.27001 -9.51511 -9.34749 -8.89917 -8.83475 -8.07019 -7.64604 -6.23979 -4.32010 0.78027 1.17208 1.88082 2.90537 3.08078 3.12149 3.20318 3.25850 3.27071 3.44559 3.71761 3.95274 3.99788 4.25631 4.28983 4.61581 4.66901 4.88117 4.88290 5.03692 5.08141 5.12170 5.18735 5.19956 5.22914 5.29776 5.32503 5.80809 5.87324 6.15606 6.28603 6.77252 7.13796 7.20681 7.23687 7.39773 7.53954 7.60034 7.87248 8.42419 8.63423 8.88023 9.34596 10.86046 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.002406 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.869691 B =11636.487488 C =13400.995972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.705 5.705 11 C 0.491 3.509 12 O -0.547 6.547 13 C 0.100 3.900 14 N -0.719 5.719 15 C 0.228 3.772 16 C -0.191 4.191 17 C -0.055 4.055 18 C -0.169 4.169 19 C 0.000 4.000 20 Cl -0.059 7.059 21 C 0.014 3.986 22 O -0.303 6.303 23 C 0.005 3.995 24 C 0.273 3.727 25 F -0.199 7.199 26 F -0.192 7.192 27 H 0.268 0.732 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.393 0.607 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.418 0.582 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.053 -23.328 -4.110 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.353 5.353 11 C 0.274 3.726 12 O -0.426 6.426 13 C -0.028 4.028 14 N -0.349 5.349 15 C 0.120 3.880 16 C -0.214 4.214 17 C -0.074 4.074 18 C -0.190 4.190 19 C -0.028 4.028 20 Cl -0.030 7.030 21 C -0.036 4.036 22 O -0.219 6.219 23 C -0.071 4.071 24 C 0.219 3.781 25 F -0.180 7.180 26 F -0.173 7.173 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.226 0.774 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.258 0.742 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.859 -23.227 -3.918 24.534 hybrid contribution 0.528 0.955 -0.082 1.094 sum 7.387 -22.272 -4.001 23.804 Atomic orbital electron populations 1.69956 1.06139 1.27584 1.48453 1.24955 0.94927 0.99513 0.94562 0.86454 0.79414 0.82207 0.78722 1.20032 1.21022 1.20006 1.21157 0.93242 0.90337 1.53795 0.91849 1.19162 0.88200 0.81721 0.97953 1.46409 1.11453 1.05785 1.71647 1.20280 0.89380 0.84645 0.78251 1.90697 1.16541 1.84425 1.50964 1.21211 0.94827 0.83458 1.03329 1.44541 1.09935 1.00975 1.79496 1.18007 0.91554 0.85170 0.93244 1.20736 0.91274 0.99506 1.09917 1.20892 0.99971 0.90951 0.95618 1.20717 0.91063 0.99295 1.07901 1.21066 0.92646 0.86177 1.02886 1.98374 1.77370 1.30632 1.96643 1.17664 0.82812 0.89772 1.13307 1.86270 1.14991 1.94148 1.26525 1.24013 0.91427 1.04026 0.87647 1.21964 0.92908 0.71946 0.91269 1.93012 1.92699 1.50895 1.81407 1.93082 1.92426 1.50626 1.81145 0.92271 0.95351 0.95313 0.77405 0.89281 0.89196 0.74159 0.84761 0.84789 0.84923 0.89788 0.89850 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 13.29 55.43 0.74 -24.78 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.55 -14.28 9.28 -34.44 -0.32 -14.60 16 8 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 9 C 0.25 6.34 5.43 -5.19 -0.03 6.31 16 10 N -0.70 -13.58 5.55 -61.47 -0.34 -13.92 16 11 C 0.49 8.91 7.90 -10.98 -0.09 8.82 16 12 O -0.55 -12.32 15.67 5.56 0.09 -12.23 16 13 C 0.10 1.25 5.40 -5.19 -0.03 1.22 16 14 N -0.72 -9.69 5.70 -59.67 -0.34 -10.03 16 15 C 0.23 2.73 6.67 -83.57 -0.56 2.17 16 16 C -0.19 -1.81 9.31 -39.40 -0.37 -2.18 16 17 C -0.06 -0.44 10.04 -39.58 -0.40 -0.84 16 18 C -0.17 -1.51 9.82 -39.53 -0.39 -1.89 16 19 C 0.00 0.00 6.33 -39.40 -0.25 -0.25 16 20 Cl -0.06 -0.63 28.50 -51.86 -1.48 -2.11 16 21 C 0.01 0.17 5.74 -39.06 -0.22 -0.05 16 22 O -0.30 -4.03 8.65 -19.86 -0.17 -4.21 16 23 C 0.01 0.05 6.29 37.16 0.23 0.29 16 24 C 0.27 2.80 5.63 37.16 0.21 3.01 16 25 F -0.20 -2.43 17.28 2.25 0.04 -2.39 16 26 F -0.19 -2.73 17.28 2.25 0.04 -2.69 16 27 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.39 6.24 8.32 -40.82 -0.34 5.90 16 31 H 0.09 0.89 7.94 -51.93 -0.41 0.48 16 32 H 0.09 0.95 7.96 -51.93 -0.41 0.53 16 33 H 0.42 6.60 6.80 -40.82 -0.28 6.33 16 34 H 0.13 1.03 6.74 -52.48 -0.35 0.68 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 366.54 15.07 5.52 5.52 Total: -1.00 -33.14 366.54 -7.52 -40.65 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.29 Total: 7.27 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -2.30 Total: 3.65 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.05 Total: -48.73 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.08 Total: -16.44 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.08 Total: -5.09 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.14 -7.52 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809194627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.388 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds