Wall clock time and date at job start Wed Apr 1 2020 05:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47061 * 240.00082 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.46992 * 179.97438 * 13 11 10 15 15 C 1.39966 * 120.00127 * 179.97438 * 14 13 11 16 16 C 1.38759 * 120.08303 * 359.72374 * 15 14 13 17 17 C 1.38208 * 120.00406 * 179.74562 * 16 15 14 18 18 C 1.38261 * 120.16408 * 0.55335 * 17 16 15 19 19 C 1.38367 * 120.16944 * 359.70571 * 18 17 16 20 20 Cl 1.73602 * 120.00354 * 180.02562 * 19 18 17 21 21 C 1.38609 * 119.99644 * 0.02562 * 19 18 17 22 22 O 1.36036 * 120.08438 * 180.02562 * 21 19 18 23 23 C 1.42901 * 116.99865 * 269.97624 * 22 21 19 24 24 C 1.52997 * 109.47163 * 179.97438 * 23 22 21 25 25 F 1.39901 * 109.47281 * 299.99889 * 24 23 22 26 26 F 1.39900 * 109.47260 * 60.00040 * 24 23 22 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 29 29 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 30 30 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 31 31 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 32 32 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 33 33 H 0.97000 * 120.00420 * 0.02562 * 14 13 11 34 34 H 1.08006 * 119.99916 * 0.02562 * 16 15 14 35 35 H 1.07996 * 119.92247 * 180.25673 * 17 16 15 36 36 H 1.08006 * 119.91531 * 179.72099 * 18 17 16 37 37 H 1.09005 * 109.47024 * 299.99633 * 23 22 21 38 38 H 1.08996 * 109.46996 * 60.00105 * 23 22 21 39 39 H 1.09001 * 109.47146 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 2.0007 -7.2975 0.0032 15 6 2.7005 -8.5096 0.0042 16 6 4.0881 -8.5117 -0.0004 17 6 4.7775 -9.7095 0.0059 18 6 4.0880 -10.9079 0.0053 19 6 2.7043 -10.9141 0.0046 20 17 1.8429 -12.4213 0.0045 21 6 2.0060 -9.7168 0.0038 22 8 0.6457 -9.7207 0.0036 23 6 -0.0029 -9.7228 -1.2698 24 6 -1.5197 -9.7278 -1.0696 25 9 -1.8919 -10.8714 -0.3549 26 9 -1.8995 -8.5869 -0.3546 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 3.1568 -3.4354 0.0021 31 1 3.3612 -5.9713 -0.8858 32 1 3.3585 -5.9707 0.8942 33 1 1.0307 -7.2975 0.0017 34 1 4.6295 -7.5771 -0.0045 35 1 5.8575 -9.7095 0.0064 36 1 4.6308 -11.8417 0.0057 37 1 0.2875 -8.8319 -1.8268 38 1 0.2927 -10.6119 -1.8266 39 1 -2.0143 -9.7289 -2.0409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809194627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:02 Heat of formation + Delta-G solvation = -181.399217 kcal Electronic energy + Delta-G solvation = -27662.777566 eV Core-core repulsion = 23073.159509 eV Total energy + Delta-G solvation = -4589.618057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.92103 -47.97556 -41.35269 -40.53503 -38.47900 -37.63128 -36.42708 -35.92402 -34.40230 -32.03905 -31.12131 -30.28376 -29.36585 -27.37695 -24.68221 -24.36483 -23.33601 -22.77218 -21.45810 -19.82561 -19.10759 -18.52938 -18.31975 -17.90786 -17.85768 -17.53340 -17.11195 -16.92893 -16.74875 -16.21070 -15.80134 -15.52857 -15.36566 -15.16135 -14.93114 -14.77979 -14.56163 -14.33066 -14.30262 -14.06281 -13.93852 -13.64306 -13.36978 -12.98474 -12.94574 -12.72195 -12.68142 -12.50875 -12.24883 -12.12953 -11.82299 -11.52580 -11.14255 -11.07878 -10.93781 -10.80400 -9.90364 -9.64686 -8.49856 -8.29618 -6.46445 0.04076 0.42295 1.10025 1.43945 1.47599 1.55781 1.62243 2.01003 2.19455 2.37964 2.68326 2.70175 2.91634 3.05757 3.28297 3.44964 3.78476 3.87588 3.99154 4.13731 4.15868 4.28412 4.37109 4.37741 4.40257 4.44372 4.51689 5.08398 5.11782 5.19138 5.22007 5.43927 5.46586 5.60336 5.66612 5.82683 5.96017 6.32197 6.54293 6.64328 6.82144 7.21977 7.40163 8.82254 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.002406 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.869691 B =11636.487488 C =13400.995972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.267 3.733 10 N -0.698 5.698 11 C 0.488 3.512 12 O -0.597 6.597 13 C 0.117 3.883 14 N -0.735 5.735 15 C 0.208 3.792 16 C -0.186 4.186 17 C -0.047 4.047 18 C -0.163 4.163 19 C -0.016 4.016 20 Cl -0.065 7.065 21 C -0.007 4.007 22 O -0.329 6.329 23 C 0.004 3.996 24 C 0.263 3.737 25 F -0.212 7.212 26 F -0.219 7.219 27 H 0.268 0.732 28 H -0.011 1.011 29 H -0.014 1.014 30 H 0.413 0.587 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.403 0.597 34 H 0.158 0.842 35 H 0.172 0.828 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 -23.704 -4.674 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.106 0.894 9 C 0.144 3.856 10 N -0.348 5.348 11 C 0.275 3.725 12 O -0.479 6.479 13 C -0.010 4.010 14 N -0.366 5.366 15 C 0.103 3.897 16 C -0.209 4.209 17 C -0.065 4.065 18 C -0.183 4.183 19 C -0.043 4.043 20 Cl -0.036 7.036 21 C -0.056 4.056 22 O -0.246 6.246 23 C -0.071 4.071 24 C 0.210 3.790 25 F -0.193 7.193 26 F -0.201 7.201 27 H 0.077 0.923 28 H 0.007 0.993 29 H 0.004 0.996 30 H 0.250 0.750 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.240 0.760 34 H 0.176 0.824 35 H 0.189 0.811 36 H 0.171 0.829 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 10.873 -23.655 -4.483 26.417 hybrid contribution -0.688 0.934 0.089 1.163 sum 10.185 -22.720 -4.394 25.284 Atomic orbital electron populations 1.70131 1.08344 1.28638 1.49951 1.26071 0.95728 1.03971 0.93893 0.85217 0.77894 0.76599 0.79582 1.18469 1.21423 1.18612 1.21598 0.94453 0.90398 1.52894 0.89407 1.18553 0.88669 0.84247 0.94166 1.46062 1.11544 1.05089 1.72147 1.21305 0.89762 0.85385 0.76084 1.90681 1.19363 1.85173 1.52643 1.21215 0.92959 0.80468 1.06315 1.44547 1.09266 1.01732 1.81012 1.18221 0.92554 0.84269 0.94704 1.21094 0.90130 1.01206 1.08485 1.21319 1.01704 0.89814 0.93687 1.21084 0.90227 1.00825 1.06188 1.21247 0.93505 0.85629 1.03968 1.98367 1.77748 1.30751 1.96735 1.17948 0.82564 0.90664 1.14383 1.86215 1.15968 1.94359 1.28075 1.24125 0.91126 1.04841 0.87032 1.22629 0.93602 0.70369 0.92390 1.92976 1.92834 1.51523 1.82005 1.93022 1.92716 1.52287 1.82062 0.92292 0.99303 0.99575 0.75001 0.85688 0.86242 0.75972 0.82436 0.81089 0.82877 0.89642 0.88126 0.80924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 2 C 0.00 0.16 5.46 84.66 0.46 0.63 16 3 Si 0.98 41.11 29.54 68.60 2.03 43.13 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.56 -29.01 9.28 25.60 0.24 -28.77 16 8 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 9 C 0.27 14.05 5.43 85.63 0.46 14.52 16 10 N -0.70 -26.85 5.55 -466.78 -2.59 -29.43 16 11 C 0.49 17.77 7.90 87.66 0.69 18.46 16 12 O -0.60 -28.19 15.67 -3.03 -0.05 -28.24 16 13 C 0.12 2.68 5.40 85.63 0.46 3.14 16 14 N -0.74 -19.30 5.70 -342.70 -1.95 -21.25 16 15 C 0.21 4.66 6.67 38.21 0.25 4.91 16 16 C -0.19 -2.85 9.31 22.39 0.21 -2.64 16 17 C -0.05 -0.55 10.04 22.27 0.22 -0.33 16 18 C -0.16 -2.41 9.82 22.31 0.22 -2.20 16 19 C -0.02 -0.33 6.33 22.39 0.14 -0.19 16 20 Cl -0.06 -1.34 28.50 -2.72 -0.08 -1.42 16 21 C -0.01 -0.16 5.74 22.61 0.13 -0.03 16 22 O -0.33 -8.99 8.65 -93.96 -0.81 -9.80 16 23 C 0.00 0.09 6.29 71.98 0.45 0.55 16 24 C 0.26 5.50 5.63 71.98 0.41 5.90 16 25 F -0.21 -5.31 17.28 44.97 0.78 -4.53 16 26 F -0.22 -6.64 17.28 44.97 0.78 -5.86 16 27 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 28 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 29 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H 0.41 12.32 8.32 -92.71 -0.77 11.55 16 31 H 0.13 1.99 7.94 -2.39 -0.02 1.97 16 32 H 0.12 2.07 7.96 -2.39 -0.02 2.05 16 33 H 0.40 13.19 6.80 -92.71 -0.63 12.56 16 34 H 0.16 1.61 6.74 -2.91 -0.02 1.59 16 35 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.17 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -77.69 366.54 2.46 -75.23 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -0.28 Total: 23.43 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 4.35 Total: 13.94 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -4.26 Total: -105.88 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.86 Total: -38.04 kcal Atomic # 9 Polarization: -11.95 SS G_CDS: 1.55 Total: -10.40 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -77.69 2.46 -75.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809194627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.170 kcal (2) G-P(sol) polarization free energy of solvation -77.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds