Wall clock time and date at job start Wed Apr 1 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00064 * 2 1 4 4 H 1.48502 * 109.46867 * 269.99549 * 3 2 1 5 5 H 1.48501 * 109.47564 * 29.99425 * 3 2 1 6 6 H 1.48498 * 109.47326 * 149.99922 * 3 2 1 7 7 C 1.37879 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99843 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99888 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47001 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47542 * 64.99746 * 12 11 10 14 14 C 1.34222 * 117.00229 * 179.97438 * 13 12 11 15 15 O 1.20826 * 120.00001 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00192 * 180.02562 * 14 13 12 17 17 S 1.81000 * 109.47454 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00014 * 179.97438 * 17 16 14 19 19 C 1.40699 * 119.75962 * 179.97438 * 18 17 16 20 20 N 1.31062 * 120.60499 * 180.02562 * 19 18 17 21 21 C 1.33962 * 119.86859 * 0.02562 * 20 19 18 22 22 C 1.40496 * 120.95574 * 179.97438 * 21 20 19 23 23 C 1.36131 * 119.74607 * 180.02562 * 22 21 20 24 24 C 1.39325 * 120.94337 * 359.97436 * 23 22 21 25 25 C 1.36132 * 120.92846 * 0.02562 * 24 23 22 26 26 C 1.40519 * 119.73041 * 0.02562 * 25 24 23 27 27 N 1.32026 * 119.76360 * 0.02568 * 18 17 16 28 28 H 0.96999 * 119.99593 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46690 * 60.00272 * 9 7 2 30 30 H 1.08999 * 109.47454 * 299.99957 * 9 7 2 31 31 H 1.09001 * 109.46929 * 60.00141 * 11 10 9 32 32 H 1.08993 * 109.47045 * 299.99876 * 11 10 9 33 33 H 1.08999 * 109.47188 * 304.99482 * 12 11 10 34 34 H 1.09002 * 109.47115 * 185.00103 * 12 11 10 35 35 H 1.09001 * 109.47202 * 59.99741 * 16 14 13 36 36 H 1.08998 * 109.46974 * 300.00235 * 16 14 13 37 37 H 1.08001 * 119.69516 * 0.02562 * 19 18 17 38 38 H 1.08002 * 120.12500 * 0.02562 * 22 21 20 39 39 H 1.08001 * 119.53012 * 180.02562 * 23 22 21 40 40 H 1.08003 * 119.53630 * 179.74396 * 24 23 22 41 41 H 1.08003 * 120.13505 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0017 11 6 1.5651 -4.8754 0.0013 12 6 2.6480 -5.9562 0.0033 13 8 3.3975 -5.8882 1.2450 14 6 4.3913 -6.7758 1.4064 15 8 4.6269 -7.5833 0.5390 16 6 5.2125 -6.7661 2.6700 17 16 6.4629 -8.0722 2.5870 18 6 7.2538 -7.8379 4.1439 19 6 8.3271 -8.6689 4.5141 20 7 8.9270 -8.5096 5.6684 21 6 8.5171 -7.5480 6.5063 22 6 9.1434 -7.3574 7.7494 23 6 8.7064 -6.3730 8.5820 24 6 7.6440 -5.5476 8.2198 25 6 7.0134 -5.7032 7.0234 26 6 7.4363 -6.7095 6.1384 27 7 6.8345 -6.8844 4.9552 28 1 -0.4849 0.8401 -0.0004 29 1 0.6248 -2.5570 -0.8897 30 1 0.6240 -2.5568 0.8903 31 1 0.9460 -4.9826 -0.8894 32 1 0.9440 -4.9823 0.8905 33 1 3.3228 -5.7960 -0.8376 34 1 2.1822 -6.9375 -0.0867 35 1 4.5623 -6.9401 3.5273 36 1 5.7035 -5.7988 2.7768 37 1 8.6595 -9.4453 3.8409 38 1 9.9684 -7.9894 8.0433 39 1 9.1906 -6.2293 9.5366 40 1 7.3132 -4.7764 8.8996 41 1 6.1915 -5.0558 6.7554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815171236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:43 Heat of formation + Delta-G solvation = -62.199790 kcal Electronic energy + Delta-G solvation = -25691.592739 eV Core-core repulsion = 21663.416794 eV Total energy + Delta-G solvation = -4028.175945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68994 -40.47188 -37.87571 -37.19748 -36.15676 -35.25206 -32.81245 -31.41389 -31.23002 -30.89792 -29.61955 -26.94097 -25.87597 -24.79251 -22.87165 -22.61941 -22.30562 -21.25285 -19.56473 -18.69103 -18.05391 -17.69317 -16.86705 -16.63660 -16.33113 -15.89922 -15.71492 -15.47782 -15.41520 -14.82785 -14.75651 -14.44336 -14.36039 -14.00038 -13.89861 -13.54928 -12.82266 -12.67626 -12.46247 -12.36377 -12.18891 -12.18345 -12.10233 -11.98848 -11.49348 -11.10608 -10.99826 -10.89063 -10.82472 -10.62659 -10.48628 -10.08634 -9.92342 -9.62153 -9.16519 -9.09297 -8.91711 -8.25195 -8.01984 -6.14825 -4.16586 -0.26766 0.05820 0.74604 1.47891 1.49074 2.02238 2.28111 2.67141 3.28197 3.33262 3.38696 3.55038 3.64776 3.77352 3.84816 4.29126 4.31936 4.42799 4.49561 4.66778 4.70092 4.70627 4.73371 4.91993 5.07747 5.13678 5.21833 5.29412 5.38463 5.44827 5.64131 5.70262 5.79246 5.85619 5.90758 6.00007 6.21165 6.40223 6.71581 7.01290 7.18693 7.36023 7.58029 7.75025 8.08979 8.48019 8.95719 9.48237 10.96679 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.010038 B = 0.002104 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.858931 B =13307.736208 C =15553.183605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.331 6.331 14 C 0.479 3.521 15 O -0.502 6.502 16 C -0.121 4.121 17 S 0.050 5.950 18 C 0.073 3.927 19 C 0.108 3.892 20 N -0.411 5.411 21 C 0.065 3.935 22 C -0.079 4.079 23 C -0.103 4.103 24 C -0.093 4.093 25 C -0.086 4.086 26 C 0.100 3.900 27 N -0.438 5.438 28 H 0.264 0.736 29 H 0.007 0.993 30 H 0.008 0.992 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.181 0.819 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.592 -18.441 15.241 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.001 3.999 13 O -0.247 6.247 14 C 0.321 3.679 15 O -0.391 6.391 16 C -0.270 4.270 17 S 0.288 5.712 18 C -0.193 4.193 19 C -0.074 4.074 20 N -0.124 5.124 21 C -0.060 4.060 22 C -0.098 4.098 23 C -0.124 4.124 24 C -0.113 4.113 25 C -0.106 4.106 26 C -0.027 4.027 27 N -0.158 5.158 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.198 0.802 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.840 -19.188 14.183 28.640 hybrid contribution -0.329 1.784 0.841 1.999 sum 15.511 -17.404 15.024 27.735 Atomic orbital electron populations 1.69960 1.06097 1.27226 1.50469 1.24954 0.95002 0.99473 0.95095 0.86323 0.79672 0.82164 0.78265 1.20438 1.21041 1.19599 1.21039 0.94088 0.89274 1.50934 0.91521 1.20247 0.88734 0.83457 0.95547 1.87918 1.35349 1.12600 1.95239 1.22332 0.93157 0.85453 1.00732 1.23328 0.93702 0.99101 0.83736 1.86584 1.42895 1.53247 1.41943 1.22458 0.79480 0.78606 0.87387 1.90700 1.67532 1.37848 1.43032 1.23271 0.99935 1.04855 0.98968 1.86341 1.34026 1.40068 1.10790 1.24933 0.98007 0.95632 1.00691 1.23683 0.91603 0.98085 0.94018 1.68676 1.25369 1.16034 1.02274 1.19535 0.96002 0.94391 0.96104 1.20791 0.99539 0.98208 0.91254 1.21033 0.96633 0.94729 1.00003 1.21071 0.95098 0.98924 0.96220 1.20866 1.00441 0.96487 0.92836 1.19533 0.94063 0.96710 0.92433 1.69166 1.27034 1.16628 1.02952 0.92610 0.97554 0.97457 0.91694 0.93092 0.90149 0.90095 0.84586 0.84322 0.80249 0.84268 0.84604 0.84465 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -15.10 9.43 -34.44 -0.32 -15.42 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.26 5.69 36.01 0.20 5.46 16 10 O -0.39 -9.33 10.30 -38.80 -0.40 -9.73 16 11 C 0.06 1.08 6.33 37.16 0.24 1.32 16 12 C 0.07 1.14 5.84 37.16 0.22 1.36 16 13 O -0.33 -5.28 10.19 -42.00 -0.43 -5.71 16 14 C 0.48 6.71 7.98 36.01 0.29 7.00 16 15 O -0.50 -7.82 15.61 -18.75 -0.29 -8.11 16 16 C -0.12 -1.35 5.43 36.01 0.20 -1.15 16 17 S 0.05 0.51 21.20 -107.50 -2.28 -1.77 16 18 C 0.07 0.76 6.99 -16.54 -0.12 0.64 16 19 C 0.11 1.00 10.97 -16.95 -0.19 0.82 16 20 N -0.41 -4.31 10.45 -10.60 -0.11 -4.42 16 21 C 0.06 0.67 6.59 -84.78 -0.56 0.11 16 22 C -0.08 -0.60 9.98 -39.49 -0.39 -1.00 16 23 C -0.10 -0.61 9.95 -39.93 -0.40 -1.00 16 24 C -0.09 -0.59 9.95 -39.93 -0.40 -0.99 16 25 C -0.09 -0.75 9.98 -39.48 -0.39 -1.14 16 26 C 0.10 1.08 6.59 -84.80 -0.56 0.52 16 27 N -0.44 -5.02 9.23 -9.63 -0.09 -5.10 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 34 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 35 H 0.14 1.33 8.12 -51.91 -0.42 0.91 16 36 H 0.14 1.51 8.12 -51.92 -0.42 1.09 16 37 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 40 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 41 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -34.77 379.77 -9.48 -44.25 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -5.04 Total: -3.97 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.28 Total: -1.97 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.54 Total: -35.43 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -1.12 Total: -23.55 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -2.28 Total: -1.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.77 -9.48 -44.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815171236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.945 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds