Wall clock time and date at job start Wed Apr 1 2020 05:42:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86795 * 120.00064 * 2 1
4 4 H 1.48502 * 109.46867 * 269.99549 * 3 2 1
5 5 H 1.48501 * 109.47564 * 29.99425 * 3 2 1
6 6 H 1.48498 * 109.47326 * 149.99922 * 3 2 1
7 7 C 1.37879 * 119.99972 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99981 * 180.02562 * 7 2 1
9 9 C 1.50704 * 119.99843 * 0.02562 * 7 2 1
10 10 O 1.42900 * 109.46835 * 180.02562 * 9 7 2
11 11 C 1.42901 * 113.99888 * 180.02562 * 10 9 7
12 12 C 1.52999 * 109.47001 * 180.02562 * 11 10 9
13 13 O 1.45196 * 109.47542 * 64.99746 * 12 11 10
14 14 C 1.34222 * 117.00229 * 179.97438 * 13 12 11
15 15 O 1.20826 * 120.00001 * 359.97438 * 14 13 12
16 16 C 1.50703 * 120.00192 * 180.02562 * 14 13 12
17 17 S 1.81000 * 109.47454 * 179.97438 * 16 14 13
18 18 C 1.76193 * 100.00014 * 179.97438 * 17 16 14
19 19 C 1.40699 * 119.75962 * 179.97438 * 18 17 16
20 20 N 1.31062 * 120.60499 * 180.02562 * 19 18 17
21 21 C 1.33962 * 119.86859 * 0.02562 * 20 19 18
22 22 C 1.40496 * 120.95574 * 179.97438 * 21 20 19
23 23 C 1.36131 * 119.74607 * 180.02562 * 22 21 20
24 24 C 1.39325 * 120.94337 * 359.97436 * 23 22 21
25 25 C 1.36132 * 120.92846 * 0.02562 * 24 23 22
26 26 C 1.40519 * 119.73041 * 0.02562 * 25 24 23
27 27 N 1.32026 * 119.76360 * 0.02568 * 18 17 16
28 28 H 0.96999 * 119.99593 * 0.02562 * 1 2 3
29 29 H 1.09000 * 109.46690 * 60.00272 * 9 7 2
30 30 H 1.08999 * 109.47454 * 299.99957 * 9 7 2
31 31 H 1.09001 * 109.46929 * 60.00141 * 11 10 9
32 32 H 1.08993 * 109.47045 * 299.99876 * 11 10 9
33 33 H 1.08999 * 109.47188 * 304.99482 * 12 11 10
34 34 H 1.09002 * 109.47115 * 185.00103 * 12 11 10
35 35 H 1.09001 * 109.47202 * 59.99741 * 16 14 13
36 36 H 1.08998 * 109.46974 * 300.00235 * 16 14 13
37 37 H 1.08001 * 119.69516 * 0.02562 * 19 18 17
38 38 H 1.08002 * 120.12500 * 0.02562 * 22 21 20
39 39 H 1.08001 * 119.53012 * 180.02562 * 23 22 21
40 40 H 1.08003 * 119.53630 * 179.74396 * 24 23 22
41 41 H 1.08003 * 120.13505 * 180.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4467 2.6527 0.6999
6 1 3.5467 1.4402 0.7000
7 6 2.0046 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 8 2.1796 -3.5853 0.0017
11 6 1.5651 -4.8754 0.0013
12 6 2.6480 -5.9562 0.0033
13 8 3.3975 -5.8882 1.2450
14 6 4.3913 -6.7758 1.4064
15 8 4.6269 -7.5833 0.5390
16 6 5.2125 -6.7661 2.6700
17 16 6.4629 -8.0722 2.5870
18 6 7.2538 -7.8379 4.1439
19 6 8.3271 -8.6689 4.5141
20 7 8.9270 -8.5096 5.6684
21 6 8.5171 -7.5480 6.5063
22 6 9.1434 -7.3574 7.7494
23 6 8.7064 -6.3730 8.5820
24 6 7.6440 -5.5476 8.2198
25 6 7.0134 -5.7032 7.0234
26 6 7.4363 -6.7095 6.1384
27 7 6.8345 -6.8844 4.9552
28 1 -0.4849 0.8401 -0.0004
29 1 0.6248 -2.5570 -0.8897
30 1 0.6240 -2.5568 0.8903
31 1 0.9460 -4.9826 -0.8894
32 1 0.9440 -4.9823 0.8905
33 1 3.3228 -5.7960 -0.8376
34 1 2.1822 -6.9375 -0.0867
35 1 4.5623 -6.9401 3.5273
36 1 5.7035 -5.7988 2.7768
37 1 8.6595 -9.4453 3.8409
38 1 9.9684 -7.9894 8.0433
39 1 9.1906 -6.2293 9.5366
40 1 7.3132 -4.7764 8.8996
41 1 6.1915 -5.0558 6.7554
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000815171236.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:42:42
Heat of formation + Delta-G solvation = -83.866753 kcal
Electronic energy + Delta-G solvation = -25692.532289 eV
Core-core repulsion = 21663.416794 eV
Total energy + Delta-G solvation = -4029.115495 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.098 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.36301 -41.65435 -38.81024 -38.46558 -37.58313 -35.96436 -34.96228 -32.45346
-31.92431 -31.61980 -30.92776 -28.98181 -26.54935 -25.47372 -24.61598 -23.98058
-23.29384 -22.41943 -20.23961 -19.38869 -19.05504 -18.73843 -18.50088 -18.12458
-17.35618 -17.25571 -16.88601 -16.51307 -16.33820 -16.18823 -15.95380 -15.38843
-15.29060 -15.07522 -15.05615 -14.61905 -14.26792 -13.95224 -13.70228 -13.24690
-13.16601 -12.93961 -12.91926 -12.90716 -12.85837 -12.71882 -12.69253 -12.48558
-12.07163 -11.88385 -11.82617 -11.78798 -11.29832 -10.91019 -10.57577 -10.35036
-10.28706 -9.70007 -8.77918 -8.33587 -6.45601 -0.92760 -0.60363 -0.09085
0.66842 0.81522 0.90180 1.39609 1.42007 1.54116 1.59801 1.68476
2.33377 2.89340 3.00371 3.02855 3.03720 3.08522 3.18192 3.40607
3.68277 3.80011 3.88717 3.93573 4.08734 4.14017 4.19728 4.23131
4.36690 4.38846 4.48417 4.63287 4.76979 4.84233 4.88613 5.07037
5.15342 5.15970 5.23287 5.35806 5.52987 5.69510 5.93774 6.01033
6.42181 6.47614 6.49743 6.78024 7.25883 8.78501
Molecular weight = 348.10amu
Principal moments of inertia in cm(-1)
A = 0.010038 B = 0.002104 C = 0.001800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2788.858931 B =13307.736208 C =15553.183605
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.007 3.993
3 Si 0.982 3.018
4 H -0.268 1.268
5 H -0.273 1.273
6 H -0.266 1.266
7 C -0.550 4.550
8 H 0.059 0.941
9 C 0.208 3.792
10 O -0.410 6.410
11 C 0.052 3.948
12 C 0.078 3.922
13 O -0.350 6.350
14 C 0.483 3.517
15 O -0.518 6.518
16 C -0.118 4.118
17 S 0.058 5.942
18 C 0.062 3.938
19 C 0.104 3.896
20 N -0.425 5.425
21 C 0.045 3.955
22 C -0.091 4.091
23 C -0.089 4.089
24 C -0.081 4.081
25 C -0.108 4.108
26 C 0.074 3.926
27 N -0.456 5.456
28 H 0.271 0.729
29 H -0.007 1.007
30 H -0.010 1.010
31 H 0.085 0.915
32 H 0.057 0.943
33 H 0.076 0.924
34 H 0.114 0.886
35 H 0.148 0.852
36 H 0.139 0.861
37 H 0.207 0.793
38 H 0.154 0.846
39 H 0.173 0.827
40 H 0.168 0.832
41 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.860 -18.064 16.770 29.863
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.568 5.568
2 C -0.192 4.192
3 Si 0.804 3.196
4 H -0.193 1.193
5 H -0.198 1.198
6 H -0.190 1.190
7 C -0.587 4.587
8 H 0.077 0.923
9 C 0.133 3.867
10 O -0.330 6.330
11 C -0.025 4.025
12 C 0.005 3.995
13 O -0.266 6.266
14 C 0.325 3.675
15 O -0.408 6.408
16 C -0.266 4.266
17 S 0.295 5.705
18 C -0.203 4.203
19 C -0.077 4.077
20 N -0.138 5.138
21 C -0.080 4.080
22 C -0.110 4.110
23 C -0.110 4.110
24 C -0.101 4.101
25 C -0.128 4.128
26 C -0.053 4.053
27 N -0.176 5.176
28 H 0.080 0.920
29 H 0.011 0.989
30 H 0.008 0.992
31 H 0.103 0.897
32 H 0.076 0.924
33 H 0.094 0.906
34 H 0.132 0.868
35 H 0.166 0.834
36 H 0.157 0.843
37 H 0.223 0.777
38 H 0.172 0.828
39 H 0.191 0.809
40 H 0.186 0.814
41 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 17.110 -18.836 15.718 29.910
hybrid contribution -0.718 1.604 0.475 1.821
sum 16.392 -17.232 16.194 28.773
Atomic orbital electron populations
1.70057 1.07632 1.28685 1.50377 1.25936 0.95995 1.03299 0.93926
0.85204 0.78368 0.77132 0.78848 1.19296 1.19791 1.19022 1.21374
0.94041 0.90945 1.52382 0.92253 1.19876 0.88552 0.84339 0.93952
1.87860 1.35554 1.14229 1.95348 1.22674 0.94489 0.83290 1.02023
1.23318 0.93163 0.99529 0.83507 1.86572 1.43660 1.54137 1.42203
1.22844 0.78927 0.77762 0.87934 1.90687 1.67892 1.38392 1.43825
1.23253 1.00095 1.05464 0.97819 1.86244 1.33713 1.39494 1.11042
1.25005 0.98603 0.96079 1.00621 1.24086 0.91118 0.98354 0.94167
1.68714 1.25817 1.16488 1.02772 1.19940 0.96358 0.94498 0.97185
1.21094 1.00078 0.99240 0.90623 1.21482 0.95670 0.93035 1.00777
1.21490 0.94200 0.98948 0.95436 1.21055 1.01351 0.96632 0.93797
1.19883 0.94846 0.97864 0.92738 1.69104 1.27720 1.17183 1.03608
0.91983 0.98899 0.99218 0.89724 0.92446 0.90559 0.86771 0.83435
0.84278 0.77689 0.82813 0.80932 0.81417 0.83953
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16
2 C 0.01 0.41 5.46 84.65 0.46 0.87 16
3 Si 0.98 44.23 29.54 68.60 2.03 46.26 16
4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16
5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
7 C -0.55 -32.76 9.43 25.60 0.24 -32.52 16
8 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16
9 C 0.21 11.54 5.69 71.24 0.41 11.95 16
10 O -0.41 -19.90 10.30 -145.57 -1.50 -21.40 16
11 C 0.05 1.84 6.33 71.98 0.46 2.29 16
12 C 0.08 2.32 5.84 71.98 0.42 2.74 16
13 O -0.35 -11.11 10.19 -48.70 -0.50 -11.61 16
14 C 0.48 13.46 7.98 71.24 0.57 14.02 16
15 O -0.52 -15.93 15.61 21.96 0.34 -15.59 16
16 C -0.12 -2.63 5.43 71.24 0.39 -2.24 16
17 S 0.06 1.18 21.20 -56.49 -1.20 -0.02 16
18 C 0.06 1.31 6.99 85.27 0.60 1.91 16
19 C 0.10 1.92 10.97 85.41 0.94 2.86 16
20 N -0.42 -8.87 10.45 -187.45 -1.96 -10.82 16
21 C 0.04 0.92 6.59 40.21 0.26 1.18 16
22 C -0.09 -1.26 9.98 22.33 0.22 -1.04 16
23 C -0.09 -0.79 9.95 22.04 0.22 -0.57 16
24 C -0.08 -0.84 9.95 22.04 0.22 -0.62 16
25 C -0.11 -1.82 9.98 22.34 0.22 -1.60 16
26 C 0.07 1.61 6.59 40.23 0.27 1.87 16
27 N -0.46 -10.68 9.23 -184.37 -1.70 -12.38 16
28 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16
29 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16
30 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
31 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16
32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
33 H 0.08 2.33 8.13 -2.39 -0.02 2.31 16
34 H 0.11 2.64 8.13 -2.39 -0.02 2.62 16
35 H 0.15 2.91 8.12 -2.40 -0.02 2.89 16
36 H 0.14 3.10 8.12 -2.40 -0.02 3.08 16
37 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16
38 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16
39 H 0.17 0.26 8.06 -2.91 -0.02 0.23 16
40 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16
41 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16
Total: -1.00 -75.84 379.77 2.74 -73.10
By element:
Atomic # 1 Polarization: 5.29 SS G_CDS: 1.05 Total: 6.34 kcal
Atomic # 6 Polarization: -4.77 SS G_CDS: 5.89 Total: 1.12 kcal
Atomic # 7 Polarization: -74.82 SS G_CDS: -3.38 Total: -78.20 kcal
Atomic # 8 Polarization: -46.94 SS G_CDS: -1.65 Total: -48.59 kcal
Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal
Atomic # 16 Polarization: 1.18 SS G_CDS: -1.20 Total: -0.02 kcal
Total: -75.84 2.74 -73.10 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815171236.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.771 kcal
(2) G-P(sol) polarization free energy of solvation -75.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.609 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.867 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds