Wall clock time and date at job start Wed Apr 1 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00064 * 2 1 4 4 H 1.48502 * 109.46867 * 269.99549 * 3 2 1 5 5 H 1.48501 * 109.47564 * 29.99425 * 3 2 1 6 6 H 1.48498 * 109.47326 * 149.99922 * 3 2 1 7 7 C 1.37879 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99843 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99888 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47001 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47542 * 64.99746 * 12 11 10 14 14 C 1.34222 * 117.00229 * 179.97438 * 13 12 11 15 15 O 1.20826 * 120.00001 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00192 * 180.02562 * 14 13 12 17 17 S 1.81000 * 109.47454 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00014 * 179.97438 * 17 16 14 19 19 C 1.40699 * 119.75962 * 179.97438 * 18 17 16 20 20 N 1.31062 * 120.60499 * 180.02562 * 19 18 17 21 21 C 1.33962 * 119.86859 * 0.02562 * 20 19 18 22 22 C 1.40496 * 120.95574 * 179.97438 * 21 20 19 23 23 C 1.36131 * 119.74607 * 180.02562 * 22 21 20 24 24 C 1.39325 * 120.94337 * 359.97436 * 23 22 21 25 25 C 1.36132 * 120.92846 * 0.02562 * 24 23 22 26 26 C 1.40519 * 119.73041 * 0.02562 * 25 24 23 27 27 N 1.32026 * 119.76360 * 0.02568 * 18 17 16 28 28 H 0.96999 * 119.99593 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46690 * 60.00272 * 9 7 2 30 30 H 1.08999 * 109.47454 * 299.99957 * 9 7 2 31 31 H 1.09001 * 109.46929 * 60.00141 * 11 10 9 32 32 H 1.08993 * 109.47045 * 299.99876 * 11 10 9 33 33 H 1.08999 * 109.47188 * 304.99482 * 12 11 10 34 34 H 1.09002 * 109.47115 * 185.00103 * 12 11 10 35 35 H 1.09001 * 109.47202 * 59.99741 * 16 14 13 36 36 H 1.08998 * 109.46974 * 300.00235 * 16 14 13 37 37 H 1.08001 * 119.69516 * 0.02562 * 19 18 17 38 38 H 1.08002 * 120.12500 * 0.02562 * 22 21 20 39 39 H 1.08001 * 119.53012 * 180.02562 * 23 22 21 40 40 H 1.08003 * 119.53630 * 179.74396 * 24 23 22 41 41 H 1.08003 * 120.13505 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0017 11 6 1.5651 -4.8754 0.0013 12 6 2.6480 -5.9562 0.0033 13 8 3.3975 -5.8882 1.2450 14 6 4.3913 -6.7758 1.4064 15 8 4.6269 -7.5833 0.5390 16 6 5.2125 -6.7661 2.6700 17 16 6.4629 -8.0722 2.5870 18 6 7.2538 -7.8379 4.1439 19 6 8.3271 -8.6689 4.5141 20 7 8.9270 -8.5096 5.6684 21 6 8.5171 -7.5480 6.5063 22 6 9.1434 -7.3574 7.7494 23 6 8.7064 -6.3730 8.5820 24 6 7.6440 -5.5476 8.2198 25 6 7.0134 -5.7032 7.0234 26 6 7.4363 -6.7095 6.1384 27 7 6.8345 -6.8844 4.9552 28 1 -0.4849 0.8401 -0.0004 29 1 0.6248 -2.5570 -0.8897 30 1 0.6240 -2.5568 0.8903 31 1 0.9460 -4.9826 -0.8894 32 1 0.9440 -4.9823 0.8905 33 1 3.3228 -5.7960 -0.8376 34 1 2.1822 -6.9375 -0.0867 35 1 4.5623 -6.9401 3.5273 36 1 5.7035 -5.7988 2.7768 37 1 8.6595 -9.4453 3.8409 38 1 9.9684 -7.9894 8.0433 39 1 9.1906 -6.2293 9.5366 40 1 7.3132 -4.7764 8.8996 41 1 6.1915 -5.0558 6.7554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815171236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:42 Heat of formation + Delta-G solvation = -83.866753 kcal Electronic energy + Delta-G solvation = -25692.532289 eV Core-core repulsion = 21663.416794 eV Total energy + Delta-G solvation = -4029.115495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.36301 -41.65435 -38.81024 -38.46558 -37.58313 -35.96436 -34.96228 -32.45346 -31.92431 -31.61980 -30.92776 -28.98181 -26.54935 -25.47372 -24.61598 -23.98058 -23.29384 -22.41943 -20.23961 -19.38869 -19.05504 -18.73843 -18.50088 -18.12458 -17.35618 -17.25571 -16.88601 -16.51307 -16.33820 -16.18823 -15.95380 -15.38843 -15.29060 -15.07522 -15.05615 -14.61905 -14.26792 -13.95224 -13.70228 -13.24690 -13.16601 -12.93961 -12.91926 -12.90716 -12.85837 -12.71882 -12.69253 -12.48558 -12.07163 -11.88385 -11.82617 -11.78798 -11.29832 -10.91019 -10.57577 -10.35036 -10.28706 -9.70007 -8.77918 -8.33587 -6.45601 -0.92760 -0.60363 -0.09085 0.66842 0.81522 0.90180 1.39609 1.42007 1.54116 1.59801 1.68476 2.33377 2.89340 3.00371 3.02855 3.03720 3.08522 3.18192 3.40607 3.68277 3.80011 3.88717 3.93573 4.08734 4.14017 4.19728 4.23131 4.36690 4.38846 4.48417 4.63287 4.76979 4.84233 4.88613 5.07037 5.15342 5.15970 5.23287 5.35806 5.52987 5.69510 5.93774 6.01033 6.42181 6.47614 6.49743 6.78024 7.25883 8.78501 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.010038 B = 0.002104 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.858931 B =13307.736208 C =15553.183605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.052 3.948 12 C 0.078 3.922 13 O -0.350 6.350 14 C 0.483 3.517 15 O -0.518 6.518 16 C -0.118 4.118 17 S 0.058 5.942 18 C 0.062 3.938 19 C 0.104 3.896 20 N -0.425 5.425 21 C 0.045 3.955 22 C -0.091 4.091 23 C -0.089 4.089 24 C -0.081 4.081 25 C -0.108 4.108 26 C 0.074 3.926 27 N -0.456 5.456 28 H 0.271 0.729 29 H -0.007 1.007 30 H -0.010 1.010 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.207 0.793 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.860 -18.064 16.770 29.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.025 4.025 12 C 0.005 3.995 13 O -0.266 6.266 14 C 0.325 3.675 15 O -0.408 6.408 16 C -0.266 4.266 17 S 0.295 5.705 18 C -0.203 4.203 19 C -0.077 4.077 20 N -0.138 5.138 21 C -0.080 4.080 22 C -0.110 4.110 23 C -0.110 4.110 24 C -0.101 4.101 25 C -0.128 4.128 26 C -0.053 4.053 27 N -0.176 5.176 28 H 0.080 0.920 29 H 0.011 0.989 30 H 0.008 0.992 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.223 0.777 38 H 0.172 0.828 39 H 0.191 0.809 40 H 0.186 0.814 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 17.110 -18.836 15.718 29.910 hybrid contribution -0.718 1.604 0.475 1.821 sum 16.392 -17.232 16.194 28.773 Atomic orbital electron populations 1.70057 1.07632 1.28685 1.50377 1.25936 0.95995 1.03299 0.93926 0.85204 0.78368 0.77132 0.78848 1.19296 1.19791 1.19022 1.21374 0.94041 0.90945 1.52382 0.92253 1.19876 0.88552 0.84339 0.93952 1.87860 1.35554 1.14229 1.95348 1.22674 0.94489 0.83290 1.02023 1.23318 0.93163 0.99529 0.83507 1.86572 1.43660 1.54137 1.42203 1.22844 0.78927 0.77762 0.87934 1.90687 1.67892 1.38392 1.43825 1.23253 1.00095 1.05464 0.97819 1.86244 1.33713 1.39494 1.11042 1.25005 0.98603 0.96079 1.00621 1.24086 0.91118 0.98354 0.94167 1.68714 1.25817 1.16488 1.02772 1.19940 0.96358 0.94498 0.97185 1.21094 1.00078 0.99240 0.90623 1.21482 0.95670 0.93035 1.00777 1.21490 0.94200 0.98948 0.95436 1.21055 1.01351 0.96632 0.93797 1.19883 0.94846 0.97864 0.92738 1.69104 1.27720 1.17183 1.03608 0.91983 0.98899 0.99218 0.89724 0.92446 0.90559 0.86771 0.83435 0.84278 0.77689 0.82813 0.80932 0.81417 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.98 44.23 29.54 68.60 2.03 46.26 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -32.76 9.43 25.60 0.24 -32.52 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 9 C 0.21 11.54 5.69 71.24 0.41 11.95 16 10 O -0.41 -19.90 10.30 -145.57 -1.50 -21.40 16 11 C 0.05 1.84 6.33 71.98 0.46 2.29 16 12 C 0.08 2.32 5.84 71.98 0.42 2.74 16 13 O -0.35 -11.11 10.19 -48.70 -0.50 -11.61 16 14 C 0.48 13.46 7.98 71.24 0.57 14.02 16 15 O -0.52 -15.93 15.61 21.96 0.34 -15.59 16 16 C -0.12 -2.63 5.43 71.24 0.39 -2.24 16 17 S 0.06 1.18 21.20 -56.49 -1.20 -0.02 16 18 C 0.06 1.31 6.99 85.27 0.60 1.91 16 19 C 0.10 1.92 10.97 85.41 0.94 2.86 16 20 N -0.42 -8.87 10.45 -187.45 -1.96 -10.82 16 21 C 0.04 0.92 6.59 40.21 0.26 1.18 16 22 C -0.09 -1.26 9.98 22.33 0.22 -1.04 16 23 C -0.09 -0.79 9.95 22.04 0.22 -0.57 16 24 C -0.08 -0.84 9.95 22.04 0.22 -0.62 16 25 C -0.11 -1.82 9.98 22.34 0.22 -1.60 16 26 C 0.07 1.61 6.59 40.23 0.27 1.87 16 27 N -0.46 -10.68 9.23 -184.37 -1.70 -12.38 16 28 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 29 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 2.33 8.13 -2.39 -0.02 2.31 16 34 H 0.11 2.64 8.13 -2.39 -0.02 2.62 16 35 H 0.15 2.91 8.12 -2.40 -0.02 2.89 16 36 H 0.14 3.10 8.12 -2.40 -0.02 3.08 16 37 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.17 0.26 8.06 -2.91 -0.02 0.23 16 40 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 41 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -75.84 379.77 2.74 -73.10 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.05 Total: 6.34 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 5.89 Total: 1.12 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -3.38 Total: -78.20 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -1.65 Total: -48.59 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -1.20 Total: -0.02 kcal Total: -75.84 2.74 -73.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815171236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.771 kcal (2) G-P(sol) polarization free energy of solvation -75.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds