Wall clock time and date at job start Wed Apr 1 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00207 * 2 1 4 4 H 1.48500 * 109.46854 * 239.99581 * 3 2 1 5 5 H 1.48497 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47272 * 119.99580 * 3 2 1 7 7 C 1.37875 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00207 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00219 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.46999 * 180.02562 * 9 7 2 11 11 C 1.42902 * 113.99673 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47171 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.47572 * 64.99505 * 12 11 10 14 14 C 1.34754 * 117.00203 * 180.02562 * 13 12 11 15 15 O 1.21515 * 120.00038 * 0.02562 * 14 13 12 16 16 C 1.47443 * 120.00280 * 180.02562 * 14 13 12 17 17 C 1.39859 * 120.03049 * 179.97438 * 16 14 13 18 18 C 1.36581 * 119.97921 * 180.02562 * 17 16 14 19 19 C 1.39660 * 120.02534 * 359.97438 * 18 17 16 20 20 C 1.48035 * 119.97728 * 180.02562 * 19 18 17 21 21 C 1.34605 * 122.38859 * 179.97438 * 20 19 18 22 22 S 1.76189 * 108.29090 * 180.02562 * 21 20 19 23 23 C 1.76070 * 90.12123 * 0.02562 * 22 21 20 24 24 N 1.38510 * 125.25348 * 180.02562 * 23 22 21 25 25 N 1.29652 * 109.49637 * 359.97438 * 23 22 21 26 26 C 1.39657 * 120.04717 * 0.29565 * 19 18 17 27 27 C 1.36595 * 120.02455 * 359.44647 * 26 19 18 28 28 H 0.97002 * 119.99830 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46903 * 59.99871 * 9 7 2 30 30 H 1.09005 * 109.46521 * 299.99853 * 9 7 2 31 31 H 1.08994 * 109.47346 * 59.99593 * 11 10 9 32 32 H 1.09004 * 109.46844 * 299.99829 * 11 10 9 33 33 H 1.09007 * 109.46848 * 304.99302 * 12 11 10 34 34 H 1.09001 * 109.46909 * 184.99885 * 12 11 10 35 35 H 1.08008 * 120.00925 * 359.97438 * 17 16 14 36 36 H 1.08004 * 119.99231 * 179.97438 * 18 17 16 37 37 H 1.08002 * 125.85816 * 0.04939 * 21 20 19 38 38 H 0.97000 * 119.99904 * 0.02562 * 24 23 22 39 39 H 0.97005 * 120.00049 * 180.02562 * 24 23 22 40 40 H 1.08000 * 119.98761 * 179.72698 * 26 19 18 41 41 H 1.07997 * 120.01201 * 180.25434 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0017 11 6 1.5649 -4.8755 0.0013 12 6 2.6478 -5.9563 0.0033 13 8 3.3973 -5.8883 1.2450 14 6 4.3956 -6.7789 1.4066 15 8 4.6337 -7.5898 0.5335 16 6 5.1992 -6.7694 2.6428 17 6 6.2352 -7.6937 2.8113 18 6 6.9785 -7.6844 3.9570 19 6 6.7049 -6.7518 4.9600 20 6 7.5116 -6.7422 6.2011 21 6 7.2905 -5.8653 7.1981 22 16 8.4541 -6.1831 8.4823 23 6 9.1461 -7.4963 7.5355 24 7 10.2060 -8.2952 7.9315 25 7 8.5097 -7.6009 6.4108 26 6 5.6670 -5.8319 4.7952 27 6 4.9257 -5.8361 3.6480 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8904 31 1 0.9457 -4.9826 -0.8893 32 1 0.9438 -4.9823 0.8906 33 1 3.3225 -5.7961 -0.8377 34 1 2.1818 -6.9376 -0.0866 35 1 6.4467 -8.4153 2.0359 36 1 7.7783 -8.3984 4.0876 37 1 6.5299 -5.0985 7.2091 38 1 10.6270 -8.1503 8.7933 39 1 10.5274 -8.9995 7.3470 40 1 5.4534 -5.1141 5.5733 41 1 4.1259 -5.1220 3.5191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815229231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:22 Heat of formation + Delta-G solvation = -61.054770 kcal Electronic energy + Delta-G solvation = -25833.482581 eV Core-core repulsion = 21805.356288 eV Total energy + Delta-G solvation = -4028.126294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.63924 -40.02189 -38.56540 -36.99234 -35.96043 -35.23859 -32.77277 -31.98176 -31.50651 -30.03410 -28.96084 -26.95233 -25.66780 -23.67470 -22.73988 -22.38055 -22.00784 -21.07815 -20.25694 -19.01703 -18.05134 -16.99347 -16.83529 -16.46263 -16.44526 -16.37505 -15.80651 -15.31431 -15.15839 -14.92164 -14.66979 -14.49403 -14.28809 -13.87769 -13.55812 -13.31825 -13.26715 -12.87233 -12.66132 -12.40320 -11.94136 -11.73107 -11.49062 -11.42077 -11.20401 -10.92959 -10.84772 -10.75357 -10.41951 -10.34287 -10.06029 -10.04221 -9.80272 -9.26549 -9.18274 -9.13425 -8.86644 -8.20619 -8.05869 -6.11338 -4.12985 0.06614 0.64335 0.87524 1.26320 1.32467 2.28205 2.77540 2.83695 2.89809 3.32705 3.35205 3.39326 3.75745 4.12563 4.32990 4.52745 4.71245 4.78478 4.80639 4.90526 4.98586 5.14392 5.25100 5.25314 5.39588 5.43918 5.48587 5.62625 5.86474 5.88454 5.93547 6.05574 6.13206 6.18006 6.25821 6.37819 6.58919 6.62620 6.70688 7.06008 7.40370 7.52182 7.78421 7.86432 8.13159 8.53145 8.99374 9.51666 11.00091 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.010927 B = 0.002004 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.745391 B =13968.355497 C =16071.943152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.075 3.925 13 O -0.336 6.336 14 C 0.507 3.493 15 O -0.514 6.514 16 C -0.117 4.117 17 C -0.058 4.058 18 C -0.100 4.100 19 C 0.007 3.993 20 C 0.143 3.857 21 C -0.263 4.263 22 S 0.057 5.943 23 C 0.350 3.650 24 N -0.816 5.816 25 N -0.536 5.536 26 C -0.115 4.115 27 C -0.055 4.055 28 H 0.265 0.735 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.182 0.818 38 H 0.416 0.584 39 H 0.414 0.586 40 H 0.135 0.865 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.450 -18.342 18.282 31.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.251 6.251 14 C 0.352 3.648 15 O -0.405 6.405 16 C -0.118 4.118 17 C -0.076 4.076 18 C -0.119 4.119 19 C 0.004 3.996 20 C 0.014 3.986 21 C -0.404 4.404 22 S 0.305 5.695 23 C -0.026 4.026 24 N -0.368 5.368 25 N -0.261 5.261 26 C -0.134 4.134 27 C -0.073 4.073 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.199 0.801 38 H 0.247 0.753 39 H 0.246 0.754 40 H 0.153 0.847 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.880 -18.341 18.637 31.677 hybrid contribution -0.181 0.635 -0.728 0.982 sum 17.699 -17.706 17.909 30.781 Atomic orbital electron populations 1.69952 1.06082 1.27284 1.50462 1.24947 0.94995 0.99433 0.95133 0.86385 0.79300 0.81850 0.78881 1.20017 1.21169 1.19974 1.21011 0.94066 0.89298 1.50943 0.91557 1.20234 0.88741 0.83490 0.95507 1.87923 1.35293 1.12600 1.95228 1.22325 0.93232 0.85447 1.00605 1.23240 0.93667 0.98849 0.84081 1.86643 1.43262 1.53653 1.41576 1.21112 0.78845 0.78210 0.86645 1.90813 1.68172 1.38283 1.43202 1.19313 0.98605 1.00298 0.93588 1.20984 0.92492 0.96671 0.97468 1.20918 0.99944 0.98700 0.92323 1.18374 0.94010 0.95897 0.91278 1.18389 0.93452 0.92058 0.94653 1.26443 1.07973 1.09091 0.96906 1.85012 1.30577 1.31664 1.22277 1.24181 0.93004 0.93818 0.91581 1.41506 1.34043 1.37630 1.23660 1.66529 1.11914 1.29051 1.18632 1.20910 0.95172 0.98863 0.98415 1.21280 0.98338 0.96237 0.91492 0.92592 0.97611 0.97484 0.91883 0.93156 0.90378 0.90328 0.84267 0.84252 0.80055 0.75323 0.75373 0.84726 0.83340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -15.18 9.43 -34.44 -0.32 -15.51 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.31 5.69 36.01 0.20 5.51 16 10 O -0.39 -9.46 10.30 -38.80 -0.40 -9.86 16 11 C 0.06 1.13 6.33 37.15 0.24 1.36 16 12 C 0.08 1.21 5.85 37.15 0.22 1.43 16 13 O -0.34 -5.74 9.43 -43.42 -0.41 -6.15 16 14 C 0.51 8.12 7.89 34.48 0.27 8.39 16 15 O -0.51 -9.00 16.12 -19.28 -0.31 -9.31 16 16 C -0.12 -1.58 5.88 -104.93 -0.62 -2.20 16 17 C -0.06 -0.69 9.54 -39.57 -0.38 -1.07 16 18 C -0.10 -1.10 9.57 -39.65 -0.38 -1.48 16 19 C 0.01 0.08 5.88 -104.82 -0.62 -0.54 16 20 C 0.14 1.49 6.62 -84.49 -0.56 0.93 16 21 C -0.26 -2.27 10.57 29.45 0.31 -1.96 16 22 S 0.06 0.40 23.42 -107.50 -2.52 -2.12 16 23 C 0.35 2.68 8.84 -87.81 -0.78 1.91 16 24 N -0.82 -3.11 9.07 30.75 0.28 -2.83 16 25 N -0.54 -5.46 9.93 -10.44 -0.10 -5.57 16 26 C -0.11 -1.21 9.41 -39.65 -0.37 -1.58 16 27 C -0.06 -0.68 9.56 -39.57 -0.38 -1.06 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.14 1.56 7.64 -52.48 -0.40 1.16 16 36 H 0.14 1.40 7.65 -52.48 -0.40 1.00 16 37 H 0.18 1.22 6.79 -52.49 -0.36 0.86 16 38 H 0.42 0.46 8.95 -40.82 -0.37 0.09 16 39 H 0.41 1.16 8.95 -40.82 -0.37 0.80 16 40 H 0.13 1.09 6.57 -52.49 -0.34 0.74 16 41 H 0.15 1.84 7.60 -52.49 -0.40 1.44 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -35.34 378.05 -10.02 -45.36 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.71 Total: -1.70 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.26 Total: -4.34 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.91 Total: -34.42 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -1.12 Total: -25.32 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.52 Total: -2.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.34 -10.02 -45.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815229231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.691 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds