Wall clock time and date at job start Wed Apr 1 2020 05:48:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86794 * 120.00207 * 2 1
4 4 H 1.48500 * 109.46854 * 239.99581 * 3 2 1
5 5 H 1.48497 * 109.47297 * 359.97438 * 3 2 1
6 6 H 1.48506 * 109.47272 * 119.99580 * 3 2 1
7 7 C 1.37875 * 119.99690 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00207 * 180.02562 * 7 2 1
9 9 C 1.50708 * 120.00219 * 0.02562 * 7 2 1
10 10 O 1.42902 * 109.46999 * 180.02562 * 9 7 2
11 11 C 1.42902 * 113.99673 * 180.02562 * 10 9 7
12 12 C 1.52995 * 109.47171 * 180.02562 * 11 10 9
13 13 O 1.45202 * 109.47572 * 64.99505 * 12 11 10
14 14 C 1.34754 * 117.00203 * 180.02562 * 13 12 11
15 15 O 1.21515 * 120.00038 * 0.02562 * 14 13 12
16 16 C 1.47443 * 120.00280 * 180.02562 * 14 13 12
17 17 C 1.39859 * 120.03049 * 179.97438 * 16 14 13
18 18 C 1.36581 * 119.97921 * 180.02562 * 17 16 14
19 19 C 1.39660 * 120.02534 * 359.97438 * 18 17 16
20 20 C 1.48035 * 119.97728 * 180.02562 * 19 18 17
21 21 C 1.34605 * 122.38859 * 179.97438 * 20 19 18
22 22 S 1.76189 * 108.29090 * 180.02562 * 21 20 19
23 23 C 1.76070 * 90.12123 * 0.02562 * 22 21 20
24 24 N 1.38510 * 125.25348 * 180.02562 * 23 22 21
25 25 N 1.29652 * 109.49637 * 359.97438 * 23 22 21
26 26 C 1.39657 * 120.04717 * 0.29565 * 19 18 17
27 27 C 1.36595 * 120.02455 * 359.44647 * 26 19 18
28 28 H 0.97002 * 119.99830 * 0.02562 * 1 2 3
29 29 H 1.08994 * 109.46903 * 59.99871 * 9 7 2
30 30 H 1.09005 * 109.46521 * 299.99853 * 9 7 2
31 31 H 1.08994 * 109.47346 * 59.99593 * 11 10 9
32 32 H 1.09004 * 109.46844 * 299.99829 * 11 10 9
33 33 H 1.09007 * 109.46848 * 304.99302 * 12 11 10
34 34 H 1.09001 * 109.46909 * 184.99885 * 12 11 10
35 35 H 1.08008 * 120.00925 * 359.97438 * 17 16 14
36 36 H 1.08004 * 119.99231 * 179.97438 * 18 17 16
37 37 H 1.08002 * 125.85816 * 0.04939 * 21 20 19
38 38 H 0.97000 * 119.99904 * 0.02562 * 24 23 22
39 39 H 0.97005 * 120.00049 * 180.02562 * 24 23 22
40 40 H 1.08000 * 119.98761 * 179.72698 * 26 19 18
41 41 H 1.07997 * 120.01201 * 180.25434 * 27 26 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1030 1.6962 -1.2125
5 1 1.2843 2.7464 -0.0006
6 1 3.1029 1.6964 1.2126
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0005
10 8 2.1795 -3.5854 0.0017
11 6 1.5649 -4.8755 0.0013
12 6 2.6478 -5.9563 0.0033
13 8 3.3973 -5.8883 1.2450
14 6 4.3956 -6.7789 1.4066
15 8 4.6337 -7.5898 0.5335
16 6 5.1992 -6.7694 2.6428
17 6 6.2352 -7.6937 2.8113
18 6 6.9785 -7.6844 3.9570
19 6 6.7049 -6.7518 4.9600
20 6 7.5116 -6.7422 6.2011
21 6 7.2905 -5.8653 7.1981
22 16 8.4541 -6.1831 8.4823
23 6 9.1461 -7.4963 7.5355
24 7 10.2060 -8.2952 7.9315
25 7 8.5097 -7.6009 6.4108
26 6 5.6670 -5.8319 4.7952
27 6 4.9257 -5.8361 3.6480
28 1 -0.4850 0.8401 -0.0004
29 1 0.6246 -2.5571 -0.8896
30 1 0.6239 -2.5567 0.8904
31 1 0.9457 -4.9826 -0.8893
32 1 0.9438 -4.9823 0.8906
33 1 3.3225 -5.7961 -0.8377
34 1 2.1818 -6.9376 -0.0866
35 1 6.4467 -8.4153 2.0359
36 1 7.7783 -8.3984 4.0876
37 1 6.5299 -5.0985 7.2091
38 1 10.6270 -8.1503 8.7933
39 1 10.5274 -8.9995 7.3470
40 1 5.4534 -5.1141 5.5733
41 1 4.1259 -5.1220 3.5191
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000815229231.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:48:22
Heat of formation + Delta-G solvation = -83.222460 kcal
Electronic energy + Delta-G solvation = -25834.443844 eV
Core-core repulsion = 21805.356288 eV
Total energy + Delta-G solvation = -4029.087557 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.098 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.72285 -40.87682 -39.45429 -38.66899 -37.40649 -35.75174 -34.93659 -32.86429
-32.42415 -31.49629 -29.72219 -28.99738 -26.55683 -24.64769 -24.42038 -23.75067
-23.14680 -22.14068 -20.96705 -19.64310 -19.18414 -18.68809 -18.06531 -17.90590
-17.34324 -17.06155 -16.99650 -16.64191 -16.39576 -16.25806 -15.79529 -15.69390
-15.50490 -15.15701 -14.63347 -14.50816 -14.27793 -13.96096 -13.81123 -13.67764
-13.44492 -13.17879 -12.92183 -12.68999 -12.46481 -12.45504 -12.08032 -12.07914
-11.99763 -11.75454 -11.63660 -11.28376 -10.88248 -10.66987 -10.45536 -10.26004
-10.14955 -9.91675 -8.66146 -8.31136 -6.43121 -0.79179 0.09796 0.15838
0.37657 0.71298 1.29678 1.41040 1.45483 1.53901 1.57866 2.02612
2.35265 2.39033 2.85249 3.02636 3.06913 3.44477 3.59306 3.77201
3.91058 3.93588 4.11038 4.16478 4.25734 4.34947 4.41534 4.49584
4.58309 4.64294 4.66441 4.86791 4.89843 5.01931 5.17811 5.20333
5.25963 5.37135 5.39540 5.55152 5.73862 5.96230 6.00675 6.32354
6.50491 6.62267 6.80533 7.03251 7.28166 8.80651
Molecular weight = 348.10amu
Principal moments of inertia in cm(-1)
A = 0.010927 B = 0.002004 C = 0.001742
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2561.745391 B =13968.355497 C =16071.943152
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.008 3.992
3 Si 0.981 3.019
4 H -0.267 1.267
5 H -0.274 1.274
6 H -0.265 1.265
7 C -0.550 4.550
8 H 0.059 0.941
9 C 0.208 3.792
10 O -0.409 6.409
11 C 0.054 3.946
12 C 0.078 3.922
13 O -0.350 6.350
14 C 0.507 3.493
15 O -0.536 6.536
16 C -0.140 4.140
17 C -0.056 4.056
18 C -0.102 4.102
19 C 0.012 3.988
20 C 0.118 3.882
21 C -0.268 4.268
22 S 0.093 5.907
23 C 0.342 3.658
24 N -0.798 5.798
25 N -0.566 5.566
26 C -0.112 4.112
27 C -0.059 4.059
28 H 0.271 0.729
29 H -0.008 1.008
30 H -0.009 1.009
31 H 0.083 0.917
32 H 0.058 0.942
33 H 0.072 0.928
34 H 0.110 0.890
35 H 0.142 0.858
36 H 0.148 0.852
37 H 0.198 0.802
38 H 0.429 0.571
39 H 0.420 0.580
40 H 0.160 0.840
41 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.943 -17.942 20.056 32.909
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.191 4.191
3 Si 0.804 3.196
4 H -0.192 1.192
5 H -0.199 1.199
6 H -0.190 1.190
7 C -0.588 4.588
8 H 0.078 0.922
9 C 0.133 3.867
10 O -0.329 6.329
11 C -0.022 4.022
12 C 0.004 3.996
13 O -0.266 6.266
14 C 0.354 3.646
15 O -0.428 6.428
16 C -0.142 4.142
17 C -0.074 4.074
18 C -0.120 4.120
19 C 0.009 3.991
20 C -0.010 4.010
21 C -0.410 4.410
22 S 0.341 5.659
23 C -0.034 4.034
24 N -0.353 5.353
25 N -0.293 5.293
26 C -0.130 4.130
27 C -0.077 4.077
28 H 0.080 0.920
29 H 0.010 0.990
30 H 0.009 0.991
31 H 0.101 0.899
32 H 0.077 0.923
33 H 0.090 0.910
34 H 0.128 0.872
35 H 0.160 0.840
36 H 0.166 0.834
37 H 0.215 0.785
38 H 0.263 0.737
39 H 0.253 0.747
40 H 0.178 0.822
41 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 19.402 -17.977 20.441 33.428
hybrid contribution -0.574 0.407 -1.132 1.333
sum 18.828 -17.570 19.309 32.188
Atomic orbital electron populations
1.70052 1.07617 1.28705 1.50336 1.25928 0.95992 1.03259 0.93942
0.85263 0.78134 0.76858 0.79345 1.19223 1.19896 1.18968 1.21346
0.94045 0.90927 1.52434 0.92240 1.19875 0.88555 0.84331 0.93943
1.87869 1.35518 1.14177 1.95340 1.22642 0.94356 0.83257 1.01972
1.23245 0.93162 0.99381 0.83765 1.86634 1.43840 1.54312 1.41847
1.21516 0.78412 0.77459 0.87171 1.90787 1.68771 1.39090 1.44129
1.19309 0.99588 1.02050 0.93251 1.21029 0.92105 0.96332 0.97922
1.21013 0.99969 0.99034 0.92011 1.18597 0.93690 0.95220 0.91563
1.18386 0.94324 0.93345 0.94914 1.26767 1.08406 1.08720 0.97058
1.84875 1.29418 1.30741 1.20841 1.24458 0.93360 0.94299 0.91316
1.41576 1.32655 1.36766 1.24262 1.66494 1.12741 1.29976 1.20085
1.21120 0.94506 0.99133 0.98279 1.21289 0.98570 0.95926 0.91921
0.92015 0.99025 0.99109 0.89881 0.92342 0.90976 0.87214 0.83975
0.83403 0.78530 0.73694 0.74660 0.82205 0.83899
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16
2 C 0.01 0.43 5.46 84.65 0.46 0.90 16
3 Si 0.98 44.42 29.54 68.60 2.03 46.45 16
4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16
5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16
6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16
7 C -0.55 -32.94 9.43 25.60 0.24 -32.70 16
8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16
9 C 0.21 11.65 5.69 71.24 0.41 12.06 16
10 O -0.41 -20.22 10.30 -145.57 -1.50 -21.72 16
11 C 0.05 1.99 6.33 71.98 0.46 2.45 16
12 C 0.08 2.50 5.85 71.98 0.42 2.93 16
13 O -0.35 -12.17 9.43 -53.99 -0.51 -12.67 16
14 C 0.51 16.59 7.89 70.25 0.55 17.15 16
15 O -0.54 -19.05 16.12 19.79 0.32 -18.73 16
16 C -0.14 -3.89 5.88 -20.07 -0.12 -4.00 16
17 C -0.06 -1.34 9.54 22.27 0.21 -1.13 16
18 C -0.10 -2.20 9.57 22.23 0.21 -1.99 16
19 C 0.01 0.26 5.88 -19.99 -0.12 0.14 16
20 C 0.12 2.32 6.62 40.69 0.27 2.59 16
21 C -0.27 -4.12 10.57 66.99 0.71 -3.41 16
22 S 0.09 1.09 23.42 -56.49 -1.32 -0.24 16
23 C 0.34 4.61 8.84 179.37 1.59 6.20 16
24 N -0.80 -4.42 9.07 -56.63 -0.51 -4.93 16
25 N -0.57 -10.83 9.93 -186.94 -1.86 -12.69 16
26 C -0.11 -2.25 9.41 22.23 0.21 -2.05 16
27 C -0.06 -1.45 9.56 22.28 0.21 -1.24 16
28 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16
29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16
30 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16
31 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16
32 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16
33 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16
34 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16
35 H 0.14 3.25 7.64 -2.91 -0.02 3.23 16
36 H 0.15 2.91 7.65 -2.91 -0.02 2.89 16
37 H 0.20 2.19 6.79 -2.91 -0.02 2.17 16
38 H 0.43 -0.10 8.95 -92.71 -0.83 -0.93 16
39 H 0.42 1.57 8.95 -92.70 -0.83 0.74 16
40 H 0.16 2.30 6.57 -2.91 -0.02 2.28 16
41 H 0.14 3.63 7.60 -2.91 -0.02 3.61 16
Total: -1.00 -76.17 378.05 2.09 -74.08
By element:
Atomic # 1 Polarization: 8.29 SS G_CDS: -0.55 Total: 7.74 kcal
Atomic # 6 Polarization: -7.83 SS G_CDS: 5.71 Total: -2.11 kcal
Atomic # 7 Polarization: -70.71 SS G_CDS: -2.09 Total: -72.80 kcal
Atomic # 8 Polarization: -51.43 SS G_CDS: -1.69 Total: -53.12 kcal
Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal
Atomic # 16 Polarization: 1.09 SS G_CDS: -1.32 Total: -0.24 kcal
Total: -76.17 2.09 -74.08 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815229231.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.142 kcal
(2) G-P(sol) polarization free energy of solvation -76.169 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.310 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.222 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds