Wall clock time and date at job start Wed Apr 1 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00207 * 2 1 4 4 H 1.48500 * 109.46854 * 239.99581 * 3 2 1 5 5 H 1.48497 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47272 * 119.99580 * 3 2 1 7 7 C 1.37875 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00207 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00219 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.46999 * 180.02562 * 9 7 2 11 11 C 1.42902 * 113.99673 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47171 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.47572 * 64.99505 * 12 11 10 14 14 C 1.34754 * 117.00203 * 180.02562 * 13 12 11 15 15 O 1.21515 * 120.00038 * 0.02562 * 14 13 12 16 16 C 1.47443 * 120.00280 * 180.02562 * 14 13 12 17 17 C 1.39859 * 120.03049 * 179.97438 * 16 14 13 18 18 C 1.36581 * 119.97921 * 180.02562 * 17 16 14 19 19 C 1.39660 * 120.02534 * 359.97438 * 18 17 16 20 20 C 1.48035 * 119.97728 * 180.02562 * 19 18 17 21 21 C 1.34605 * 122.38859 * 179.97438 * 20 19 18 22 22 S 1.76189 * 108.29090 * 180.02562 * 21 20 19 23 23 C 1.76070 * 90.12123 * 0.02562 * 22 21 20 24 24 N 1.38510 * 125.25348 * 180.02562 * 23 22 21 25 25 N 1.29652 * 109.49637 * 359.97438 * 23 22 21 26 26 C 1.39657 * 120.04717 * 0.29565 * 19 18 17 27 27 C 1.36595 * 120.02455 * 359.44647 * 26 19 18 28 28 H 0.97002 * 119.99830 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46903 * 59.99871 * 9 7 2 30 30 H 1.09005 * 109.46521 * 299.99853 * 9 7 2 31 31 H 1.08994 * 109.47346 * 59.99593 * 11 10 9 32 32 H 1.09004 * 109.46844 * 299.99829 * 11 10 9 33 33 H 1.09007 * 109.46848 * 304.99302 * 12 11 10 34 34 H 1.09001 * 109.46909 * 184.99885 * 12 11 10 35 35 H 1.08008 * 120.00925 * 359.97438 * 17 16 14 36 36 H 1.08004 * 119.99231 * 179.97438 * 18 17 16 37 37 H 1.08002 * 125.85816 * 0.04939 * 21 20 19 38 38 H 0.97000 * 119.99904 * 0.02562 * 24 23 22 39 39 H 0.97005 * 120.00049 * 180.02562 * 24 23 22 40 40 H 1.08000 * 119.98761 * 179.72698 * 26 19 18 41 41 H 1.07997 * 120.01201 * 180.25434 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0017 11 6 1.5649 -4.8755 0.0013 12 6 2.6478 -5.9563 0.0033 13 8 3.3973 -5.8883 1.2450 14 6 4.3956 -6.7789 1.4066 15 8 4.6337 -7.5898 0.5335 16 6 5.1992 -6.7694 2.6428 17 6 6.2352 -7.6937 2.8113 18 6 6.9785 -7.6844 3.9570 19 6 6.7049 -6.7518 4.9600 20 6 7.5116 -6.7422 6.2011 21 6 7.2905 -5.8653 7.1981 22 16 8.4541 -6.1831 8.4823 23 6 9.1461 -7.4963 7.5355 24 7 10.2060 -8.2952 7.9315 25 7 8.5097 -7.6009 6.4108 26 6 5.6670 -5.8319 4.7952 27 6 4.9257 -5.8361 3.6480 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8904 31 1 0.9457 -4.9826 -0.8893 32 1 0.9438 -4.9823 0.8906 33 1 3.3225 -5.7961 -0.8377 34 1 2.1818 -6.9376 -0.0866 35 1 6.4467 -8.4153 2.0359 36 1 7.7783 -8.3984 4.0876 37 1 6.5299 -5.0985 7.2091 38 1 10.6270 -8.1503 8.7933 39 1 10.5274 -8.9995 7.3470 40 1 5.4534 -5.1141 5.5733 41 1 4.1259 -5.1220 3.5191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815229231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:22 Heat of formation + Delta-G solvation = -83.222460 kcal Electronic energy + Delta-G solvation = -25834.443844 eV Core-core repulsion = 21805.356288 eV Total energy + Delta-G solvation = -4029.087557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72285 -40.87682 -39.45429 -38.66899 -37.40649 -35.75174 -34.93659 -32.86429 -32.42415 -31.49629 -29.72219 -28.99738 -26.55683 -24.64769 -24.42038 -23.75067 -23.14680 -22.14068 -20.96705 -19.64310 -19.18414 -18.68809 -18.06531 -17.90590 -17.34324 -17.06155 -16.99650 -16.64191 -16.39576 -16.25806 -15.79529 -15.69390 -15.50490 -15.15701 -14.63347 -14.50816 -14.27793 -13.96096 -13.81123 -13.67764 -13.44492 -13.17879 -12.92183 -12.68999 -12.46481 -12.45504 -12.08032 -12.07914 -11.99763 -11.75454 -11.63660 -11.28376 -10.88248 -10.66987 -10.45536 -10.26004 -10.14955 -9.91675 -8.66146 -8.31136 -6.43121 -0.79179 0.09796 0.15838 0.37657 0.71298 1.29678 1.41040 1.45483 1.53901 1.57866 2.02612 2.35265 2.39033 2.85249 3.02636 3.06913 3.44477 3.59306 3.77201 3.91058 3.93588 4.11038 4.16478 4.25734 4.34947 4.41534 4.49584 4.58309 4.64294 4.66441 4.86791 4.89843 5.01931 5.17811 5.20333 5.25963 5.37135 5.39540 5.55152 5.73862 5.96230 6.00675 6.32354 6.50491 6.62267 6.80533 7.03251 7.28166 8.80651 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.010927 B = 0.002004 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.745391 B =13968.355497 C =16071.943152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.078 3.922 13 O -0.350 6.350 14 C 0.507 3.493 15 O -0.536 6.536 16 C -0.140 4.140 17 C -0.056 4.056 18 C -0.102 4.102 19 C 0.012 3.988 20 C 0.118 3.882 21 C -0.268 4.268 22 S 0.093 5.907 23 C 0.342 3.658 24 N -0.798 5.798 25 N -0.566 5.566 26 C -0.112 4.112 27 C -0.059 4.059 28 H 0.271 0.729 29 H -0.008 1.008 30 H -0.009 1.009 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.198 0.802 38 H 0.429 0.571 39 H 0.420 0.580 40 H 0.160 0.840 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.943 -17.942 20.056 32.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.022 4.022 12 C 0.004 3.996 13 O -0.266 6.266 14 C 0.354 3.646 15 O -0.428 6.428 16 C -0.142 4.142 17 C -0.074 4.074 18 C -0.120 4.120 19 C 0.009 3.991 20 C -0.010 4.010 21 C -0.410 4.410 22 S 0.341 5.659 23 C -0.034 4.034 24 N -0.353 5.353 25 N -0.293 5.293 26 C -0.130 4.130 27 C -0.077 4.077 28 H 0.080 0.920 29 H 0.010 0.990 30 H 0.009 0.991 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.215 0.785 38 H 0.263 0.737 39 H 0.253 0.747 40 H 0.178 0.822 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 19.402 -17.977 20.441 33.428 hybrid contribution -0.574 0.407 -1.132 1.333 sum 18.828 -17.570 19.309 32.188 Atomic orbital electron populations 1.70052 1.07617 1.28705 1.50336 1.25928 0.95992 1.03259 0.93942 0.85263 0.78134 0.76858 0.79345 1.19223 1.19896 1.18968 1.21346 0.94045 0.90927 1.52434 0.92240 1.19875 0.88555 0.84331 0.93943 1.87869 1.35518 1.14177 1.95340 1.22642 0.94356 0.83257 1.01972 1.23245 0.93162 0.99381 0.83765 1.86634 1.43840 1.54312 1.41847 1.21516 0.78412 0.77459 0.87171 1.90787 1.68771 1.39090 1.44129 1.19309 0.99588 1.02050 0.93251 1.21029 0.92105 0.96332 0.97922 1.21013 0.99969 0.99034 0.92011 1.18597 0.93690 0.95220 0.91563 1.18386 0.94324 0.93345 0.94914 1.26767 1.08406 1.08720 0.97058 1.84875 1.29418 1.30741 1.20841 1.24458 0.93360 0.94299 0.91316 1.41576 1.32655 1.36766 1.24262 1.66494 1.12741 1.29976 1.20085 1.21120 0.94506 0.99133 0.98279 1.21289 0.98570 0.95926 0.91921 0.92015 0.99025 0.99109 0.89881 0.92342 0.90976 0.87214 0.83975 0.83403 0.78530 0.73694 0.74660 0.82205 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 2 C 0.01 0.43 5.46 84.65 0.46 0.90 16 3 Si 0.98 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -32.94 9.43 25.60 0.24 -32.70 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.65 5.69 71.24 0.41 12.06 16 10 O -0.41 -20.22 10.30 -145.57 -1.50 -21.72 16 11 C 0.05 1.99 6.33 71.98 0.46 2.45 16 12 C 0.08 2.50 5.85 71.98 0.42 2.93 16 13 O -0.35 -12.17 9.43 -53.99 -0.51 -12.67 16 14 C 0.51 16.59 7.89 70.25 0.55 17.15 16 15 O -0.54 -19.05 16.12 19.79 0.32 -18.73 16 16 C -0.14 -3.89 5.88 -20.07 -0.12 -4.00 16 17 C -0.06 -1.34 9.54 22.27 0.21 -1.13 16 18 C -0.10 -2.20 9.57 22.23 0.21 -1.99 16 19 C 0.01 0.26 5.88 -19.99 -0.12 0.14 16 20 C 0.12 2.32 6.62 40.69 0.27 2.59 16 21 C -0.27 -4.12 10.57 66.99 0.71 -3.41 16 22 S 0.09 1.09 23.42 -56.49 -1.32 -0.24 16 23 C 0.34 4.61 8.84 179.37 1.59 6.20 16 24 N -0.80 -4.42 9.07 -56.63 -0.51 -4.93 16 25 N -0.57 -10.83 9.93 -186.94 -1.86 -12.69 16 26 C -0.11 -2.25 9.41 22.23 0.21 -2.05 16 27 C -0.06 -1.45 9.56 22.28 0.21 -1.24 16 28 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 31 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.14 3.25 7.64 -2.91 -0.02 3.23 16 36 H 0.15 2.91 7.65 -2.91 -0.02 2.89 16 37 H 0.20 2.19 6.79 -2.91 -0.02 2.17 16 38 H 0.43 -0.10 8.95 -92.71 -0.83 -0.93 16 39 H 0.42 1.57 8.95 -92.70 -0.83 0.74 16 40 H 0.16 2.30 6.57 -2.91 -0.02 2.28 16 41 H 0.14 3.63 7.60 -2.91 -0.02 3.61 16 Total: -1.00 -76.17 378.05 2.09 -74.08 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -0.55 Total: 7.74 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 5.71 Total: -2.11 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -2.09 Total: -72.80 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -1.69 Total: -53.12 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -1.32 Total: -0.24 kcal Total: -76.17 2.09 -74.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815229231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.142 kcal (2) G-P(sol) polarization free energy of solvation -76.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds