Wall clock time and date at job start Wed Apr 1 2020 04:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 120.00170 * 2 1 4 4 N 1.46498 * 109.47454 * 124.16559 * 3 2 1 5 5 C 1.46494 * 120.00123 * 85.34813 * 4 3 2 6 6 C 1.50702 * 109.47041 * 80.44394 * 5 4 3 7 7 H 1.07995 * 120.00005 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00214 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99341 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00046 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46977 * 90.00210 * 10 8 6 12 12 H 1.48500 * 109.46963 * 209.99774 * 10 8 6 13 13 H 1.48492 * 109.47153 * 329.99649 * 10 8 6 14 14 C 1.34778 * 119.99903 * 265.34968 * 4 3 2 15 15 O 1.21580 * 120.00043 * 353.44143 * 14 4 3 16 16 C 1.47668 * 119.99784 * 173.43305 * 14 4 3 17 17 C 1.37976 * 119.45938 * 30.29866 * 16 14 4 18 18 C 1.41430 * 119.69322 * 179.97438 * 17 16 14 19 19 N 1.32472 * 130.83707 * 179.97438 * 18 17 16 20 20 S 1.55535 * 109.37604 * 180.02562 * 19 18 17 21 21 N 1.55513 * 100.21966 * 0.02562 * 20 19 18 22 22 C 1.32264 * 109.48920 * 0.02562 * 21 20 19 23 23 C 1.41948 * 130.71550 * 180.02562 * 22 21 20 24 24 N 1.48025 * 119.87608 * 359.97438 * 23 22 21 25 25 O 1.21798 * 120.00326 * 180.02562 * 24 23 22 26 26 O 1.21803 * 120.00069 * 0.02562 * 24 23 22 27 27 C 1.35106 * 120.25115 * 179.77607 * 23 22 21 28 28 H 1.08000 * 120.00623 * 5.02753 * 1 2 3 29 29 H 1.08008 * 120.00219 * 185.03346 * 1 2 3 30 30 H 1.08001 * 120.00068 * 180.02562 * 2 1 3 31 31 H 1.09010 * 109.46931 * 4.16357 * 3 2 1 32 32 H 1.09004 * 109.47543 * 244.16793 * 3 2 1 33 33 H 1.08998 * 109.47555 * 200.44403 * 5 4 3 34 34 H 1.09002 * 109.47314 * 320.44903 * 5 4 3 35 35 H 0.97006 * 119.99069 * 180.02562 * 9 8 6 36 36 H 1.07997 * 120.15255 * 359.95163 * 17 16 14 37 37 H 1.07997 * 119.27633 * 180.24997 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9794 1.3402 1.1428 5 6 4.3116 0.7410 1.0325 6 6 5.2353 1.6972 0.3229 7 1 4.8667 2.6552 -0.0127 8 6 6.5508 1.3485 0.1012 9 7 6.9995 0.1815 0.5095 10 14 7.6955 2.5335 -0.7790 11 1 8.3564 3.4149 0.2167 12 1 8.7268 1.7656 -1.5220 13 1 6.9134 3.3618 -1.7315 14 6 2.5964 1.9238 2.2957 15 8 1.5409 2.5246 2.3516 16 6 3.4586 1.8333 3.4911 17 6 4.8269 1.7469 3.3358 18 6 5.6574 1.6606 4.4773 19 7 6.9746 1.5699 4.5854 20 16 7.3656 1.5023 6.0893 21 7 5.9570 1.5773 6.7441 22 6 5.0353 1.6639 5.7996 23 6 3.6217 1.7551 5.8908 24 7 2.9674 1.7619 7.2187 25 8 1.7546 1.8396 7.2997 26 8 3.6419 1.6899 8.2303 27 6 2.8713 1.8396 4.7705 28 1 -0.5401 0.9317 -0.0820 29 1 -0.5401 -0.9318 0.0821 30 1 1.8500 -0.9353 -0.0004 31 1 1.3575 2.1323 0.0746 32 1 2.6330 1.3959 -0.9250 33 1 4.7002 0.5328 2.0294 34 1 4.2463 -0.1884 0.4666 35 1 7.9250 -0.0636 0.3538 36 1 5.2616 1.7449 2.3472 37 1 1.7974 1.9124 4.8584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816803369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:38 Heat of formation + Delta-G solvation = 96.953218 kcal Electronic energy + Delta-G solvation = -28186.608934 eV Core-core repulsion = 24061.794038 eV Total energy + Delta-G solvation = -4124.814897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05814 -40.98928 -39.61483 -36.56128 -36.07821 -35.91280 -34.36694 -33.63911 -32.55177 -31.06258 -28.42690 -27.87189 -26.51756 -25.48378 -23.66151 -22.91156 -21.89230 -20.58604 -19.65006 -18.98289 -18.63590 -18.31265 -17.40498 -17.33865 -16.95790 -16.57208 -15.99786 -15.86053 -15.48156 -14.83643 -14.67507 -14.41534 -14.07747 -13.22702 -13.02371 -12.76118 -12.64243 -12.27579 -12.11592 -11.78319 -11.63070 -11.51107 -11.36137 -11.29254 -11.20906 -10.97610 -10.94614 -10.87616 -10.85292 -10.57706 -10.26309 -10.10291 -9.63682 -9.16871 -9.04699 -9.00242 -8.60735 -8.11172 -6.58439 -4.68551 -0.66059 0.65226 0.89287 1.20127 1.44514 1.65930 1.72116 2.39101 2.76883 3.02991 3.11867 3.14023 3.47862 3.62971 3.87012 4.03437 4.44134 4.60835 4.64669 4.71698 4.90098 5.19602 5.20236 5.39119 5.47933 5.65141 5.83996 5.88170 6.04930 6.16318 6.19772 6.28782 6.44479 6.67542 6.74693 6.80662 6.95752 7.10672 7.36640 7.55480 7.91434 7.93685 8.37038 8.56464 8.99255 10.44983 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.005339 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.326247 B = 5243.560391 C = 8048.609631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.163 4.163 3 C 0.144 3.856 4 N -0.580 5.580 5 C 0.205 3.795 6 C -0.553 4.553 7 H 0.073 0.927 8 C 0.073 3.927 9 N -0.866 5.866 10 Si 0.901 3.099 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.566 3.434 15 O -0.553 6.553 16 C -0.157 4.157 17 C 0.042 3.958 18 C 0.067 3.933 19 N -0.544 5.544 20 S 0.823 5.177 21 N -0.581 5.581 22 C 0.117 3.883 23 C -0.041 4.041 24 N 0.041 4.959 25 O -0.183 6.183 26 O -0.139 6.139 27 C 0.062 3.938 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.274 0.726 36 H 0.234 0.766 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -0.104 4.191 4.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.182 4.182 3 C 0.021 3.979 4 N -0.309 5.309 5 C 0.086 3.914 6 C -0.590 4.590 7 H 0.091 0.909 8 C -0.135 4.135 9 N -0.501 5.501 10 Si 0.727 3.273 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.193 1.193 14 C 0.353 3.647 15 O -0.433 6.433 16 C -0.167 4.167 17 C 0.018 3.982 18 C -0.093 4.093 19 N -0.396 5.396 20 S 0.868 5.132 21 N -0.430 5.430 22 C -0.045 4.045 23 C -0.132 4.132 24 N 0.558 4.442 25 O -0.390 6.390 26 O -0.360 6.360 27 C 0.037 3.963 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.249 0.751 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.483 -0.103 4.553 4.790 hybrid contribution -0.902 0.432 -0.839 1.305 sum 0.581 0.329 3.715 3.774 Atomic orbital electron populations 1.23795 0.95835 1.01660 1.00991 1.23365 0.96126 0.99339 0.99411 1.20457 0.92587 0.95248 0.89591 1.47991 1.17028 1.55112 1.10765 1.20395 0.77188 0.94955 0.98890 1.21510 0.94936 1.03764 1.38820 0.90925 1.25046 0.98180 0.95454 0.94813 1.69907 1.17052 1.19857 1.43241 0.86417 0.80247 0.80710 0.79936 1.19972 1.20640 1.19329 1.17662 0.84891 0.79476 0.82658 1.90742 1.24600 1.43399 1.84549 1.19488 0.93360 1.10599 0.93268 1.23730 0.91359 0.81819 1.01338 1.21076 0.87490 1.06450 0.94257 1.72348 1.17567 1.22467 1.27205 1.78650 1.10285 1.39440 0.84788 1.72288 1.07508 1.26604 1.36612 1.20579 0.92872 1.02271 0.88729 1.19503 0.87965 1.21896 0.83824 1.43257 1.00742 0.97649 1.02556 1.94524 0.96129 1.54945 1.93435 1.94568 1.64277 1.52264 1.24895 1.20678 1.02434 0.84427 0.88803 0.88506 0.88781 0.87323 0.89655 0.89030 0.92433 0.93718 0.91656 0.75056 0.81162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.38 14.31 29.02 0.42 -1.97 16 2 C -0.16 -2.37 9.84 -36.03 -0.35 -2.73 16 3 C 0.14 2.33 5.93 -5.20 -0.03 2.30 16 4 N -0.58 -10.68 2.45 -177.62 -0.44 -11.11 16 5 C 0.20 4.14 4.66 -5.20 -0.02 4.11 16 6 C -0.55 -12.16 7.53 -34.44 -0.26 -12.42 16 7 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.07 1.65 5.38 -17.81 -0.10 1.56 16 9 N -0.87 -20.61 13.29 55.43 0.74 -19.87 16 10 Si 0.90 18.23 29.54 -169.99 -5.02 13.21 16 11 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 12 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 13 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 14 C 0.57 10.62 7.43 -12.41 -0.09 10.53 16 15 O -0.55 -11.17 16.14 5.29 0.09 -11.09 16 16 C -0.16 -2.76 5.58 -105.18 -0.59 -3.35 16 17 C 0.04 0.77 7.52 -38.46 -0.29 0.48 16 18 C 0.07 1.17 7.15 -83.21 -0.59 0.57 16 19 N -0.54 -9.00 11.45 25.64 0.29 -8.71 16 20 S 0.82 10.22 23.60 -107.50 -2.54 7.69 16 21 N -0.58 -9.19 10.42 25.70 0.27 -8.93 16 22 C 0.12 2.01 6.85 -83.10 -0.57 1.44 16 23 C -0.04 -0.71 6.87 -79.64 -0.55 -1.26 16 24 N 0.04 0.73 4.45 34.11 0.15 0.88 16 25 O -0.18 -3.25 18.36 -29.46 -0.54 -3.79 16 26 O -0.14 -2.61 17.98 -29.46 -0.53 -3.14 16 27 C 0.06 1.02 8.96 -39.73 -0.36 0.67 16 28 H 0.10 1.21 7.85 -52.49 -0.41 0.79 16 29 H 0.09 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.09 1.38 6.87 -51.92 -0.36 1.02 16 32 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 33 H 0.06 1.21 3.95 -53.20 -0.21 1.00 16 34 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 36 H 0.23 4.73 3.07 -52.49 -0.16 4.56 16 37 H 0.17 2.61 7.30 -52.49 -0.38 2.23 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -26.70 344.55 -8.48 -35.18 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -2.76 Total: 4.56 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -3.39 Total: -0.06 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 1.01 Total: -47.74 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.99 Total: -18.02 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Atomic # 16 Polarization: 10.22 SS G_CDS: -2.54 Total: 7.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.70 -8.48 -35.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.129 kcal (2) G-P(sol) polarization free energy of solvation -26.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds