Wall clock time and date at job start Wed Apr 1 2020 04:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 120.00170 * 2 1 4 4 N 1.46498 * 109.47454 * 124.16559 * 3 2 1 5 5 C 1.46494 * 120.00123 * 85.34813 * 4 3 2 6 6 C 1.50702 * 109.47041 * 80.44394 * 5 4 3 7 7 H 1.07995 * 120.00005 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00214 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99341 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00046 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46977 * 90.00210 * 10 8 6 12 12 H 1.48500 * 109.46963 * 209.99774 * 10 8 6 13 13 H 1.48492 * 109.47153 * 329.99649 * 10 8 6 14 14 C 1.34778 * 119.99903 * 265.34968 * 4 3 2 15 15 O 1.21580 * 120.00043 * 353.44143 * 14 4 3 16 16 C 1.47668 * 119.99784 * 173.43305 * 14 4 3 17 17 C 1.37976 * 119.45938 * 30.29866 * 16 14 4 18 18 C 1.41430 * 119.69322 * 179.97438 * 17 16 14 19 19 N 1.32472 * 130.83707 * 179.97438 * 18 17 16 20 20 S 1.55535 * 109.37604 * 180.02562 * 19 18 17 21 21 N 1.55513 * 100.21966 * 0.02562 * 20 19 18 22 22 C 1.32264 * 109.48920 * 0.02562 * 21 20 19 23 23 C 1.41948 * 130.71550 * 180.02562 * 22 21 20 24 24 N 1.48025 * 119.87608 * 359.97438 * 23 22 21 25 25 O 1.21798 * 120.00326 * 180.02562 * 24 23 22 26 26 O 1.21803 * 120.00069 * 0.02562 * 24 23 22 27 27 C 1.35106 * 120.25115 * 179.77607 * 23 22 21 28 28 H 1.08000 * 120.00623 * 5.02753 * 1 2 3 29 29 H 1.08008 * 120.00219 * 185.03346 * 1 2 3 30 30 H 1.08001 * 120.00068 * 180.02562 * 2 1 3 31 31 H 1.09010 * 109.46931 * 4.16357 * 3 2 1 32 32 H 1.09004 * 109.47543 * 244.16793 * 3 2 1 33 33 H 1.08998 * 109.47555 * 200.44403 * 5 4 3 34 34 H 1.09002 * 109.47314 * 320.44903 * 5 4 3 35 35 H 0.97006 * 119.99069 * 180.02562 * 9 8 6 36 36 H 1.07997 * 120.15255 * 359.95163 * 17 16 14 37 37 H 1.07997 * 119.27633 * 180.24997 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9794 1.3402 1.1428 5 6 4.3116 0.7410 1.0325 6 6 5.2353 1.6972 0.3229 7 1 4.8667 2.6552 -0.0127 8 6 6.5508 1.3485 0.1012 9 7 6.9995 0.1815 0.5095 10 14 7.6955 2.5335 -0.7790 11 1 8.3564 3.4149 0.2167 12 1 8.7268 1.7656 -1.5220 13 1 6.9134 3.3618 -1.7315 14 6 2.5964 1.9238 2.2957 15 8 1.5409 2.5246 2.3516 16 6 3.4586 1.8333 3.4911 17 6 4.8269 1.7469 3.3358 18 6 5.6574 1.6606 4.4773 19 7 6.9746 1.5699 4.5854 20 16 7.3656 1.5023 6.0893 21 7 5.9570 1.5773 6.7441 22 6 5.0353 1.6639 5.7996 23 6 3.6217 1.7551 5.8908 24 7 2.9674 1.7619 7.2187 25 8 1.7546 1.8396 7.2997 26 8 3.6419 1.6899 8.2303 27 6 2.8713 1.8396 4.7705 28 1 -0.5401 0.9317 -0.0820 29 1 -0.5401 -0.9318 0.0821 30 1 1.8500 -0.9353 -0.0004 31 1 1.3575 2.1323 0.0746 32 1 2.6330 1.3959 -0.9250 33 1 4.7002 0.5328 2.0294 34 1 4.2463 -0.1884 0.4666 35 1 7.9250 -0.0636 0.3538 36 1 5.2616 1.7449 2.3472 37 1 1.7974 1.9124 4.8584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816803369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:38 Heat of formation + Delta-G solvation = 83.171253 kcal Electronic energy + Delta-G solvation = -28187.206565 eV Core-core repulsion = 24061.794038 eV Total energy + Delta-G solvation = -4125.412527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.44054 -42.33768 -41.04230 -37.92754 -37.46429 -37.42070 -35.66835 -35.04362 -34.03959 -32.40115 -29.89882 -29.32831 -27.91680 -26.81527 -25.25343 -24.29737 -23.27224 -21.90139 -20.82128 -20.26459 -20.02715 -19.73222 -18.75464 -18.70682 -18.62624 -17.98275 -17.44283 -17.17466 -16.83725 -16.39692 -16.14741 -15.77669 -15.35525 -14.69733 -14.39813 -14.18988 -14.07192 -13.58024 -13.43556 -13.09515 -13.05514 -12.89519 -12.75203 -12.74045 -12.67171 -12.36185 -12.28209 -12.25337 -12.19530 -12.09782 -11.78185 -11.70009 -11.11363 -10.71463 -10.29951 -10.22852 -10.04000 -9.61466 -8.30196 -6.45732 -1.96127 -0.69803 -0.45322 0.01086 0.13583 0.35977 0.46109 1.24506 1.36454 1.41308 1.46875 1.53510 2.08212 2.20380 2.38833 2.56305 3.00173 3.14866 3.19197 3.32441 3.52271 3.85003 4.03950 4.09637 4.25160 4.35033 4.54166 4.58643 4.69042 4.81363 4.85474 5.04513 5.04621 5.13134 5.30996 5.53982 5.64916 5.71135 5.85229 5.88254 6.38989 6.51499 6.67970 7.04458 7.26965 8.73035 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.005339 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.326247 B = 5243.560391 C = 8048.609631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.185 4.185 3 C 0.141 3.859 4 N -0.580 5.580 5 C 0.218 3.782 6 C -0.557 4.557 7 H 0.065 0.935 8 C 0.041 3.959 9 N -0.894 5.894 10 Si 0.947 3.053 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.564 3.436 15 O -0.569 6.569 16 C -0.154 4.154 17 C 0.038 3.962 18 C 0.050 3.950 19 N -0.585 5.585 20 S 0.961 5.039 21 N -0.608 5.608 22 C 0.104 3.896 23 C -0.039 4.039 24 N 0.040 4.960 25 O -0.176 6.176 26 O -0.155 6.155 27 C 0.067 3.933 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.029 0.971 35 H 0.272 0.728 36 H 0.215 0.785 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 0.008 5.140 5.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C 0.020 3.980 4 N -0.308 5.308 5 C 0.098 3.902 6 C -0.595 4.595 7 H 0.083 0.917 8 C -0.164 4.164 9 N -0.530 5.530 10 Si 0.772 3.228 11 H -0.201 1.201 12 H -0.206 1.206 13 H -0.193 1.193 14 C 0.352 3.648 15 O -0.451 6.451 16 C -0.163 4.163 17 C 0.013 3.987 18 C -0.105 4.105 19 N -0.440 5.440 20 S 1.005 4.995 21 N -0.460 5.460 22 C -0.054 4.054 23 C -0.130 4.130 24 N 0.557 4.443 25 O -0.386 6.386 26 O -0.372 6.372 27 C 0.041 3.959 28 H 0.120 0.880 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.790 0.012 5.482 5.767 hybrid contribution -0.913 0.396 -0.957 1.380 sum 0.877 0.408 4.525 4.628 Atomic orbital electron populations 1.24021 0.95186 1.02945 0.97979 1.23222 0.96722 0.98272 1.02176 1.20554 0.92332 0.96408 0.88719 1.48020 1.16751 1.54661 1.11382 1.20113 0.77743 0.93963 0.98374 1.21567 0.95261 1.03564 1.39068 0.91723 1.25537 0.99183 0.96357 0.95309 1.69974 1.17170 1.21066 1.44831 0.85704 0.78830 0.79225 0.78999 1.20098 1.20649 1.19286 1.17808 0.84818 0.79167 0.82976 1.90723 1.25299 1.44170 1.84871 1.19370 0.93012 1.10663 0.93291 1.23432 0.91767 0.82429 1.01052 1.20846 0.87829 1.07797 0.94062 1.72097 1.17446 1.23791 1.30618 1.78130 1.06867 1.33212 0.81296 1.72073 1.09062 1.27192 1.37641 1.20463 0.92959 1.03195 0.88771 1.19575 0.88333 1.21599 0.83462 1.43341 1.00742 0.97495 1.02745 1.94513 0.96201 1.54414 1.93520 1.94562 1.64335 1.53058 1.25204 1.20643 1.02811 0.84320 0.88076 0.87963 0.86606 0.87521 0.89681 0.89336 0.92689 0.95271 0.91818 0.76907 0.80125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 14.31 67.78 0.97 -2.98 16 2 C -0.18 -5.30 9.84 25.65 0.25 -5.04 16 3 C 0.14 4.64 5.93 85.63 0.51 5.14 16 4 N -0.58 -21.70 2.45 -834.12 -2.05 -23.75 16 5 C 0.22 9.04 4.66 85.63 0.40 9.44 16 6 C -0.56 -25.00 7.53 25.60 0.19 -24.81 16 7 H 0.06 2.95 7.81 -2.91 -0.02 2.92 16 8 C 0.04 1.88 5.38 84.65 0.46 2.33 16 9 N -0.89 -43.17 13.29 21.45 0.28 -42.89 16 10 Si 0.95 37.48 29.54 68.60 2.03 39.51 16 11 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 12 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 13 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 14 C 0.56 21.31 7.43 86.73 0.64 21.95 16 15 O -0.57 -22.89 16.14 -3.97 -0.06 -22.96 16 16 C -0.15 -5.41 5.58 -20.23 -0.11 -5.53 16 17 C 0.04 1.41 7.52 22.99 0.17 1.58 16 18 C 0.05 1.73 7.15 41.88 0.30 2.02 16 19 N -0.58 -18.46 11.45 -72.80 -0.83 -19.30 16 20 S 0.96 21.09 23.60 -56.49 -1.33 19.75 16 21 N -0.61 -17.90 10.42 -72.61 -0.76 -18.66 16 22 C 0.10 3.46 6.85 42.05 0.29 3.75 16 23 C -0.04 -1.31 6.87 36.57 0.25 -1.06 16 24 N 0.04 1.41 4.45 -45.99 -0.20 1.20 16 25 O -0.18 -6.05 18.36 18.89 0.35 -5.70 16 26 O -0.15 -5.58 17.98 18.88 0.34 -5.24 16 27 C 0.07 2.16 8.96 22.17 0.20 2.36 16 28 H 0.10 2.36 7.85 -2.91 -0.02 2.34 16 29 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.11 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.08 2.76 6.87 -2.38 -0.02 2.75 16 32 H 0.09 2.89 8.11 -2.39 -0.02 2.87 16 33 H 0.06 2.37 3.95 -3.58 -0.01 2.35 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.27 12.63 8.31 -92.70 -0.77 11.86 16 36 H 0.22 8.89 3.07 -2.91 -0.01 8.88 16 37 H 0.18 5.39 7.30 -2.91 -0.02 5.36 16 Total: -1.00 -56.64 344.55 3.44 -53.20 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.16 Total: 15.67 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 4.52 Total: 9.17 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -3.56 Total: -103.39 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: 0.62 Total: -33.90 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Atomic # 16 Polarization: 21.09 SS G_CDS: -1.33 Total: 19.75 kcal Total: -56.64 3.44 -53.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.370 kcal (2) G-P(sol) polarization free energy of solvation -56.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds