Wall clock time and date at job start Wed Apr 1 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 119.99864 * 2 1 4 4 H 1.48504 * 109.47631 * 270.00199 * 3 2 1 5 5 H 1.48507 * 109.47304 * 30.00343 * 3 2 1 6 6 H 1.48499 * 109.47428 * 150.00228 * 3 2 1 7 7 C 1.38813 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99976 * 204.64973 * 7 2 1 9 9 N 1.36937 * 119.99863 * 24.64018 * 7 2 1 10 10 C 1.46494 * 120.00231 * 9.92834 * 9 7 2 11 11 C 1.50711 * 109.46891 * 268.38712 * 10 9 7 12 12 O 1.20820 * 120.00138 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99548 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99687 * 189.92391 * 9 7 2 15 15 C 1.50704 * 109.47147 * 90.00359 * 14 9 7 16 16 N 1.30969 * 126.44011 * 90.00048 * 15 14 9 17 17 C 1.35218 * 105.58157 * 180.02562 * 16 15 14 18 18 C 1.48428 * 126.41486 * 179.97438 * 17 16 15 19 19 C 1.39322 * 120.11594 * 359.72448 * 18 17 16 20 20 C 1.38031 * 119.87497 * 179.69986 * 19 18 17 21 21 C 1.38323 * 120.11416 * 0.59282 * 20 19 18 22 22 N 1.48028 * 119.87403 * 179.69645 * 21 20 19 23 23 O 1.21795 * 119.99765 * 179.97438 * 22 21 20 24 24 O 1.21792 * 120.00069 * 359.97438 * 22 21 20 25 25 C 1.38313 * 120.24686 * 359.68270 * 21 20 19 26 26 C 1.38020 * 120.11903 * 0.02562 * 25 21 20 27 27 N 1.30757 * 107.17323 * 359.97438 * 17 16 15 28 28 O 1.21297 * 110.09519 * 0.02562 * 27 17 16 29 29 H 0.97000 * 120.00356 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47364 * 28.38160 * 10 9 7 31 31 H 1.09000 * 109.47574 * 148.38862 * 10 9 7 32 32 H 0.96701 * 116.99309 * 180.02562 * 13 11 10 33 33 H 1.09004 * 109.47334 * 330.00651 * 14 9 7 34 34 H 1.09004 * 109.47413 * 210.00240 * 14 9 7 35 35 H 1.08001 * 120.06728 * 359.97438 * 19 18 17 36 36 H 1.07997 * 119.94035 * 180.29523 * 20 19 18 37 37 H 1.08004 * 119.94408 * 179.97438 * 25 21 20 38 38 H 1.08007 * 120.06374 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0164 -1.2449 0.3895 9 7 1.4191 -2.3338 -0.4955 10 6 0.1489 -2.2401 -1.2192 11 6 -0.9942 -2.4118 -0.2521 12 8 -0.7707 -2.5933 0.9213 13 8 -2.2606 -2.3631 -0.6945 14 6 2.0570 -3.6383 -0.3013 15 6 1.5679 -4.2499 0.9863 16 7 0.5254 -5.0295 1.1306 17 6 0.4761 -5.3299 2.4480 18 6 -0.5313 -6.1893 3.1186 19 6 -1.5577 -6.7714 2.3780 20 6 -2.4882 -7.5748 3.0056 21 6 -2.4100 -7.7923 4.3694 22 7 -3.4146 -8.6494 5.0382 23 8 -3.3476 -8.8428 6.2388 24 8 -4.3082 -9.1612 4.3879 25 6 -1.3964 -7.2122 5.1104 26 6 -0.4572 -6.4120 4.4920 27 7 1.4819 -4.7215 3.0207 28 8 2.1165 -4.0985 2.1958 29 1 -0.4851 0.8400 0.0004 30 1 0.0752 -1.2642 -1.6991 31 1 0.1040 -3.0221 -1.9773 32 1 -2.9600 -2.4782 -0.0367 33 1 3.1385 -3.5106 -0.2550 34 1 1.8038 -4.2942 -1.1342 35 1 -1.6227 -6.5981 1.3139 36 1 -3.2815 -8.0305 2.4317 37 1 -1.3402 -7.3850 6.1751 38 1 0.3342 -5.9597 5.0714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:33 Heat of formation + Delta-G solvation = 36.766197 kcal Electronic energy + Delta-G solvation = -30279.448381 eV Core-core repulsion = 25709.270708 eV Total energy + Delta-G solvation = -4570.177673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.099 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -44.94389 -42.32869 -39.63249 -38.87491 -36.72264 -36.33634 -35.36863 -34.57458 -33.19087 -31.88077 -31.74162 -30.88123 -28.16217 -27.05944 -26.65828 -24.03038 -23.66664 -22.93368 -22.21927 -21.02919 -20.25035 -19.54654 -18.78626 -17.69268 -17.62580 -17.60456 -17.15710 -16.79765 -16.04690 -15.62548 -15.46612 -15.25366 -14.99056 -14.28784 -14.17094 -13.99737 -13.78435 -13.70388 -13.60166 -13.08617 -12.38605 -11.88778 -11.84530 -11.73369 -11.67292 -11.57707 -11.34594 -11.32508 -11.29575 -11.21027 -10.85417 -10.60396 -10.42967 -10.37092 -10.23735 -9.93220 -9.68611 -9.47102 -9.08298 -8.84521 -7.64331 -6.29953 -3.61100 -0.49064 0.70232 0.96404 1.21751 1.79701 2.58476 3.17394 3.25714 3.27976 3.31027 3.40209 3.61906 3.77278 4.05192 4.07029 4.21781 4.30174 4.35264 4.62772 4.79140 4.93001 5.02652 5.06041 5.18491 5.38193 5.48849 5.60661 5.72487 5.92856 5.94313 5.96506 6.08889 6.21334 6.25359 6.50260 6.67461 6.75219 7.38311 7.48189 7.71508 7.73570 8.58425 8.63869 9.20081 9.34217 9.65107 10.79563 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.002794 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.574748 B =10019.232908 C =10528.154548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.011 3.989 3 Si 0.921 3.079 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.274 4.274 8 H 0.093 0.907 9 N -0.540 5.540 10 C 0.181 3.819 11 C 0.483 3.517 12 O -0.512 6.512 13 O -0.542 6.542 14 C 0.217 3.783 15 C 0.202 3.798 16 N -0.481 5.481 17 C 0.181 3.819 18 C 0.063 3.937 19 C -0.080 4.080 20 C -0.054 4.054 21 C -0.044 4.044 22 N 0.031 4.969 23 O -0.163 6.163 24 O -0.161 6.161 25 C -0.054 4.054 26 C -0.093 4.093 27 N -0.380 5.380 28 O 0.085 5.915 29 H 0.264 0.736 30 H 0.121 0.879 31 H 0.062 0.938 32 H 0.382 0.618 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -11.149 0.030 11.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.189 4.189 3 Si 0.749 3.251 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.403 4.403 8 H 0.111 0.889 9 N -0.258 5.258 10 C 0.053 3.947 11 C 0.322 3.678 12 O -0.398 6.398 13 O -0.352 6.352 14 C 0.085 3.915 15 C -0.021 4.021 16 N -0.215 5.215 17 C -0.088 4.088 18 C 0.061 3.939 19 C -0.100 4.100 20 C -0.073 4.073 21 C -0.128 4.128 22 N 0.550 4.450 23 O -0.379 6.379 24 O -0.377 6.377 25 C -0.073 4.073 26 C -0.113 4.113 27 N -0.088 5.088 28 O 0.024 5.976 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.079 0.921 32 H 0.237 0.763 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.177 0.823 36 H 0.176 0.824 37 H 0.176 0.824 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.327 -10.815 0.438 10.829 hybrid contribution -0.712 0.976 1.064 1.610 sum -0.385 -9.840 1.502 9.961 Atomic orbital electron populations 1.69874 1.05598 1.26855 1.51074 1.24956 0.95288 0.99221 0.99442 0.86001 0.79094 0.81992 0.77998 1.20749 1.21720 1.20004 1.19509 0.97067 0.84305 1.39378 0.88944 1.44883 1.20330 1.00868 1.59692 1.20623 0.80388 1.03259 0.90440 1.24805 0.82334 0.70128 0.90490 1.90515 1.84467 1.45456 1.19325 1.84595 1.18190 1.86386 1.46064 1.20308 0.98949 0.86776 0.85442 1.31436 0.89142 0.90026 0.91460 1.71791 1.18449 1.17072 1.14190 1.23400 0.96293 1.00683 0.88427 1.17812 0.91469 0.92209 0.92438 1.21275 0.92059 0.94796 1.01897 1.20988 0.99061 0.95870 0.91427 1.21221 0.94848 1.02795 0.93932 1.43614 1.00896 0.99521 1.00989 1.94532 1.80482 1.65509 0.97354 1.94533 1.27258 1.50404 1.65520 1.20918 0.91081 0.93631 1.01653 1.21237 0.99208 0.97530 0.93369 1.74693 1.08456 1.09625 1.16001 1.85232 1.44549 1.51869 1.15966 0.92591 0.86101 0.92052 0.76300 0.88515 0.88571 0.82332 0.82364 0.82440 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.88 9.08 55.49 0.50 -22.38 16 2 C 0.01 0.28 4.88 -17.43 -0.09 0.19 16 3 Si 0.92 19.51 29.62 -169.99 -5.03 14.47 16 4 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.27 -6.37 9.70 -15.06 -0.15 -6.51 16 8 H 0.09 2.07 7.92 -52.49 -0.42 1.66 16 9 N -0.54 -11.11 2.09 -175.98 -0.37 -11.48 16 10 C 0.18 3.66 5.57 -5.19 -0.03 3.63 16 11 C 0.48 10.59 6.45 36.01 0.23 10.82 16 12 O -0.51 -12.84 14.48 -18.74 -0.27 -13.12 16 13 O -0.54 -10.37 13.42 -39.27 -0.53 -10.90 16 14 C 0.22 3.55 6.33 -5.19 -0.03 3.52 16 15 C 0.20 3.76 6.76 -12.99 -0.09 3.67 16 16 N -0.48 -8.93 10.21 -9.88 -0.10 -9.03 16 17 C 0.18 3.26 7.80 -156.12 -1.22 2.05 16 18 C 0.06 0.91 5.88 -104.89 -0.62 0.30 16 19 C -0.08 -1.00 9.70 -39.25 -0.38 -1.38 16 20 C -0.05 -0.61 9.54 -39.63 -0.38 -0.99 16 21 C -0.04 -0.54 6.85 -79.88 -0.55 -1.09 16 22 N 0.03 0.42 4.45 33.99 0.15 0.57 16 23 O -0.16 -2.28 18.44 -29.46 -0.54 -2.82 16 24 O -0.16 -2.24 18.44 -29.46 -0.54 -2.79 16 25 C -0.05 -0.60 9.54 -39.63 -0.38 -0.98 16 26 C -0.09 -1.16 9.69 -39.26 -0.38 -1.54 16 27 N -0.38 -7.26 11.86 30.97 0.37 -6.89 16 28 O 0.08 1.66 11.29 18.04 0.20 1.87 16 29 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.12 2.66 6.27 -51.93 -0.33 2.33 16 31 H 0.06 1.02 7.91 -51.93 -0.41 0.61 16 32 H 0.38 6.02 9.10 45.56 0.41 6.43 16 33 H 0.10 1.35 8.03 -51.93 -0.42 0.93 16 34 H 0.10 1.28 7.91 -51.93 -0.41 0.87 16 35 H 0.16 1.93 7.88 -52.49 -0.41 1.52 16 36 H 0.16 1.45 7.60 -52.49 -0.40 1.05 16 37 H 0.16 1.44 7.60 -52.48 -0.40 1.04 16 38 H 0.15 1.80 7.87 -52.48 -0.41 1.39 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -30.91 349.83 -7.26 -38.17 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -2.32 Total: 7.36 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: -4.05 Total: 11.70 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.55 Total: -49.22 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -1.68 Total: -27.75 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.91 -7.26 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.938 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds