Wall clock time and date at job start Wed Apr 1 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 119.99864 * 2 1 4 4 H 1.48504 * 109.47631 * 270.00199 * 3 2 1 5 5 H 1.48507 * 109.47304 * 30.00343 * 3 2 1 6 6 H 1.48499 * 109.47428 * 150.00228 * 3 2 1 7 7 C 1.38813 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99976 * 204.64973 * 7 2 1 9 9 N 1.36937 * 119.99863 * 24.64018 * 7 2 1 10 10 C 1.46494 * 120.00231 * 9.92834 * 9 7 2 11 11 C 1.50711 * 109.46891 * 268.38712 * 10 9 7 12 12 O 1.20820 * 120.00138 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99548 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99687 * 189.92391 * 9 7 2 15 15 C 1.50704 * 109.47147 * 90.00359 * 14 9 7 16 16 N 1.30969 * 126.44011 * 90.00048 * 15 14 9 17 17 C 1.35218 * 105.58157 * 180.02562 * 16 15 14 18 18 C 1.48428 * 126.41486 * 179.97438 * 17 16 15 19 19 C 1.39322 * 120.11594 * 359.72448 * 18 17 16 20 20 C 1.38031 * 119.87497 * 179.69986 * 19 18 17 21 21 C 1.38323 * 120.11416 * 0.59282 * 20 19 18 22 22 N 1.48028 * 119.87403 * 179.69645 * 21 20 19 23 23 O 1.21795 * 119.99765 * 179.97438 * 22 21 20 24 24 O 1.21792 * 120.00069 * 359.97438 * 22 21 20 25 25 C 1.38313 * 120.24686 * 359.68270 * 21 20 19 26 26 C 1.38020 * 120.11903 * 0.02562 * 25 21 20 27 27 N 1.30757 * 107.17323 * 359.97438 * 17 16 15 28 28 O 1.21297 * 110.09519 * 0.02562 * 27 17 16 29 29 H 0.97000 * 120.00356 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47364 * 28.38160 * 10 9 7 31 31 H 1.09000 * 109.47574 * 148.38862 * 10 9 7 32 32 H 0.96701 * 116.99309 * 180.02562 * 13 11 10 33 33 H 1.09004 * 109.47334 * 330.00651 * 14 9 7 34 34 H 1.09004 * 109.47413 * 210.00240 * 14 9 7 35 35 H 1.08001 * 120.06728 * 359.97438 * 19 18 17 36 36 H 1.07997 * 119.94035 * 180.29523 * 20 19 18 37 37 H 1.08004 * 119.94408 * 179.97438 * 25 21 20 38 38 H 1.08007 * 120.06374 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0164 -1.2449 0.3895 9 7 1.4191 -2.3338 -0.4955 10 6 0.1489 -2.2401 -1.2192 11 6 -0.9942 -2.4118 -0.2521 12 8 -0.7707 -2.5933 0.9213 13 8 -2.2606 -2.3631 -0.6945 14 6 2.0570 -3.6383 -0.3013 15 6 1.5679 -4.2499 0.9863 16 7 0.5254 -5.0295 1.1306 17 6 0.4761 -5.3299 2.4480 18 6 -0.5313 -6.1893 3.1186 19 6 -1.5577 -6.7714 2.3780 20 6 -2.4882 -7.5748 3.0056 21 6 -2.4100 -7.7923 4.3694 22 7 -3.4146 -8.6494 5.0382 23 8 -3.3476 -8.8428 6.2388 24 8 -4.3082 -9.1612 4.3879 25 6 -1.3964 -7.2122 5.1104 26 6 -0.4572 -6.4120 4.4920 27 7 1.4819 -4.7215 3.0207 28 8 2.1165 -4.0985 2.1958 29 1 -0.4851 0.8400 0.0004 30 1 0.0752 -1.2642 -1.6991 31 1 0.1040 -3.0221 -1.9773 32 1 -2.9600 -2.4782 -0.0367 33 1 3.1385 -3.5106 -0.2550 34 1 1.8038 -4.2942 -1.1342 35 1 -1.6227 -6.5981 1.3139 36 1 -3.2815 -8.0305 2.4317 37 1 -1.3402 -7.3850 6.1751 38 1 0.3342 -5.9597 5.0714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:32 Heat of formation + Delta-G solvation = 17.810914 kcal Electronic energy + Delta-G solvation = -30280.270344 eV Core-core repulsion = 25709.270708 eV Total energy + Delta-G solvation = -4570.999635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.099 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.35641 -43.36429 -40.63643 -40.53019 -37.87783 -37.77870 -36.73317 -36.24445 -34.58349 -33.30649 -32.71549 -32.25978 -29.67384 -28.26200 -28.15969 -25.33940 -24.92234 -24.22531 -23.45609 -22.38586 -21.77197 -20.54779 -19.82766 -19.12221 -18.93245 -18.78156 -18.71457 -18.40717 -17.27794 -17.17147 -17.01760 -16.44377 -15.98496 -15.96832 -15.51101 -15.32036 -15.19634 -14.99832 -14.66913 -14.26977 -13.81012 -13.41635 -13.34828 -13.00757 -12.87658 -12.84241 -12.73447 -12.63584 -12.41892 -12.39717 -12.36947 -12.12567 -12.01973 -11.99578 -11.89093 -11.34271 -11.16988 -10.61312 -10.60727 -10.30560 -9.32732 -8.08255 -5.39392 -1.54457 -0.22806 -0.15396 0.20124 0.44444 1.33032 1.50505 1.54275 1.60405 2.03149 2.10723 2.19963 2.39572 2.44717 2.77636 2.92032 3.20212 3.25168 3.32381 3.48150 3.62740 3.74928 4.01649 4.12705 4.44444 4.47920 4.49722 4.55218 4.62771 4.72047 4.81905 4.95438 4.99156 5.10001 5.12460 5.17560 5.26129 5.61657 6.04583 6.16939 6.40180 6.87169 7.19334 7.52308 7.72170 7.94523 8.99496 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.002794 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.574748 B =10019.232908 C =10528.154548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.039 4.039 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.310 1.310 6 H -0.270 1.270 7 C -0.270 4.270 8 H 0.097 0.903 9 N -0.553 5.553 10 C 0.180 3.820 11 C 0.483 3.517 12 O -0.549 6.549 13 O -0.537 6.537 14 C 0.214 3.786 15 C 0.199 3.801 16 N -0.486 5.486 17 C 0.183 3.817 18 C 0.035 3.965 19 C -0.075 4.075 20 C -0.042 4.042 21 C -0.047 4.047 22 N 0.031 4.969 23 O -0.172 6.172 24 O -0.167 6.167 25 C -0.043 4.043 26 C -0.089 4.089 27 N -0.398 5.398 28 O 0.064 5.936 29 H 0.252 0.748 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.396 0.604 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.162 0.838 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 -12.609 -0.374 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.235 4.235 3 Si 0.802 3.198 4 H -0.201 1.201 5 H -0.238 1.238 6 H -0.195 1.195 7 C -0.399 4.399 8 H 0.114 0.886 9 N -0.271 5.271 10 C 0.052 3.948 11 C 0.325 3.675 12 O -0.437 6.437 13 O -0.348 6.348 14 C 0.083 3.917 15 C -0.024 4.024 16 N -0.220 5.220 17 C -0.087 4.087 18 C 0.033 3.967 19 C -0.096 4.096 20 C -0.061 4.061 21 C -0.131 4.131 22 N 0.548 4.452 23 O -0.386 6.386 24 O -0.383 6.383 25 C -0.062 4.062 26 C -0.110 4.110 27 N -0.109 5.109 28 O 0.007 5.993 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.253 0.747 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.180 0.820 36 H 0.199 0.801 37 H 0.197 0.803 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.424 -12.291 0.009 12.298 hybrid contribution -0.787 1.260 1.219 1.921 sum -0.364 -11.031 1.228 11.105 Atomic orbital electron populations 1.70014 1.06566 1.26211 1.53827 1.25540 0.95800 1.01552 1.00607 0.85186 0.77878 0.78929 0.77857 1.20108 1.23820 1.19463 1.19770 0.97303 0.85379 1.37438 0.88575 1.44856 1.20500 1.01841 1.59888 1.20667 0.79903 1.03543 0.90705 1.25174 0.83181 0.68969 0.90211 1.90498 1.85117 1.47317 1.20807 1.84548 1.17980 1.85861 1.46417 1.20696 0.99925 0.85594 0.85438 1.31682 0.88929 0.90111 0.91658 1.71789 1.18246 1.17339 1.14625 1.23971 0.96269 1.00058 0.88406 1.17995 0.91929 0.93273 0.93454 1.21283 0.91673 0.94631 1.01979 1.21157 0.98895 0.94885 0.91194 1.21379 0.94705 1.02639 0.94369 1.43757 1.00974 0.99497 1.00946 1.94532 1.80639 1.65785 0.97618 1.94531 1.27613 1.50675 1.65463 1.21090 0.90027 0.92422 1.02632 1.21274 0.99556 0.97518 0.92627 1.74668 1.09322 1.10668 1.16215 1.85191 1.45263 1.52450 1.16423 0.93859 0.88109 0.88125 0.74650 0.86029 0.84974 0.82036 0.80147 0.80276 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.02 9.08 21.65 0.20 -47.83 16 2 C -0.04 -1.88 4.88 84.86 0.41 -1.46 16 3 Si 0.97 40.48 29.62 68.60 2.03 42.51 16 4 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.31 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 7 C -0.27 -12.34 9.70 84.03 0.81 -11.53 16 8 H 0.10 4.22 7.92 -2.91 -0.02 4.20 16 9 N -0.55 -22.00 2.09 -710.68 -1.49 -23.49 16 10 C 0.18 7.06 5.57 85.64 0.48 7.54 16 11 C 0.48 20.85 6.45 71.24 0.46 21.31 16 12 O -0.55 -27.43 14.48 21.98 0.32 -27.11 16 13 O -0.54 -20.01 13.42 -51.45 -0.69 -20.70 16 14 C 0.21 6.52 6.33 85.63 0.54 7.06 16 15 C 0.20 7.18 6.76 88.36 0.60 7.78 16 16 N -0.49 -17.51 10.21 -302.51 -3.09 -20.60 16 17 C 0.18 6.46 7.80 137.30 1.07 7.54 16 18 C 0.04 0.99 5.88 -20.04 -0.12 0.88 16 19 C -0.08 -1.76 9.70 22.48 0.22 -1.54 16 20 C -0.04 -0.85 9.54 22.24 0.21 -0.64 16 21 C -0.05 -1.04 6.85 36.41 0.25 -0.79 16 22 N 0.03 0.77 4.45 -46.36 -0.21 0.56 16 23 O -0.17 -4.45 18.44 18.89 0.35 -4.10 16 24 O -0.17 -4.32 18.44 18.90 0.35 -3.97 16 25 C -0.04 -0.86 9.54 22.24 0.21 -0.65 16 26 C -0.09 -2.10 9.69 22.48 0.22 -1.88 16 27 N -0.40 -15.14 11.86 -59.13 -0.70 -15.84 16 28 O 0.06 2.49 11.29 74.61 0.84 3.33 16 29 H 0.25 13.20 8.31 -92.71 -0.77 12.43 16 30 H 0.10 4.42 6.27 -2.39 -0.01 4.40 16 31 H 0.10 3.07 7.91 -2.39 -0.02 3.05 16 32 H 0.40 12.12 9.10 -74.06 -0.67 11.44 16 33 H 0.12 3.07 8.03 -2.39 -0.02 3.06 16 34 H 0.13 3.05 7.91 -2.38 -0.02 3.04 16 35 H 0.16 3.66 7.88 -2.91 -0.02 3.64 16 36 H 0.18 2.77 7.60 -2.91 -0.02 2.75 16 37 H 0.18 2.80 7.60 -2.91 -0.02 2.78 16 38 H 0.16 3.54 7.87 -2.91 -0.02 3.52 16 Total: -1.00 -66.58 349.83 3.77 -62.81 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.49 Total: 20.81 kcal Atomic # 6 Polarization: 28.25 SS G_CDS: 5.37 Total: 33.62 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -5.29 Total: -107.19 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: 1.17 Total: -52.56 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -66.58 3.77 -62.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.622 kcal (2) G-P(sol) polarization free energy of solvation -66.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds