Wall clock time and date at job start Wed Apr 1 2020 04:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46506 * 119.99954 * 2 1 4 4 S 1.65593 * 119.99925 * 179.97438 * 2 1 3 5 5 O 1.42105 * 106.40462 * 341.09696 * 4 2 1 6 6 O 1.42102 * 106.40240 * 208.17936 * 4 2 1 7 7 N 1.65599 * 107.21818 * 94.63834 * 4 2 1 8 8 C 1.46503 * 119.99924 * 275.52420 * 7 4 2 9 9 C 1.46496 * 120.00180 * 95.52830 * 7 4 2 10 10 C 1.50697 * 109.47676 * 94.17668 * 9 7 4 11 11 C 1.38114 * 120.02737 * 263.66299 * 10 9 7 12 12 C 1.38381 * 120.05569 * 179.97438 * 11 10 9 13 13 Cl 1.73601 * 119.94600 * 179.97438 * 12 11 10 14 14 C 1.38443 * 120.11113 * 359.97438 * 12 11 10 15 15 C 1.38063 * 120.05392 * 359.67976 * 14 12 11 16 16 C 1.38858 * 120.02944 * 83.63194 * 10 9 7 17 17 O 1.35766 * 120.05072 * 0.03076 * 16 10 9 18 18 C 1.34827 * 116.99552 * 173.94650 * 17 16 10 19 19 H 1.08004 * 120.00326 * 5.53177 * 18 17 16 20 20 C 1.38653 * 119.99996 * 185.53104 * 18 17 16 21 21 N 1.31559 * 120.00303 * 191.23973 * 20 18 17 22 22 Si 1.86803 * 119.99901 * 11.51891 * 20 18 17 23 23 H 1.48495 * 109.47220 * 86.59750 * 22 20 18 24 24 H 1.48495 * 109.47106 * 206.59674 * 22 20 18 25 25 H 1.48504 * 109.46991 * 326.59553 * 22 20 18 26 26 H 1.08996 * 109.47529 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46836 * 300.00173 * 1 2 3 28 28 H 1.09003 * 109.47007 * 59.99558 * 1 2 3 29 29 H 1.09000 * 109.46805 * 274.23862 * 3 2 1 30 30 H 1.08995 * 109.46838 * 34.24110 * 3 2 1 31 31 H 1.08999 * 109.47076 * 154.23989 * 3 2 1 32 32 H 1.08999 * 109.46843 * 275.08382 * 8 7 4 33 33 H 1.09002 * 109.47058 * 35.07972 * 8 7 4 34 34 H 1.08998 * 109.47193 * 155.07718 * 8 7 4 35 35 H 1.09005 * 109.46975 * 334.17296 * 9 7 4 36 36 H 1.09009 * 109.47032 * 214.18153 * 9 7 4 37 37 H 1.07998 * 119.97354 * 359.97163 * 11 10 9 38 38 H 1.08003 * 119.96992 * 179.97438 * 14 12 11 39 39 H 1.07996 * 120.02884 * 180.31921 * 15 14 12 40 40 H 0.96996 * 120.00296 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3767 -2.4263 0.4427 6 8 3.5342 -1.1805 0.6443 7 7 2.6488 -1.7954 -1.5758 8 6 1.6603 -2.4821 -2.4110 9 6 3.9521 -1.4284 -2.1352 10 6 4.8981 -2.5950 -2.0123 11 6 5.7741 -2.6652 -0.9469 12 6 6.6427 -3.7364 -0.8332 13 17 7.7431 -3.8215 0.5068 14 6 6.6357 -4.7404 -1.7864 15 6 5.7570 -4.6785 -2.8495 16 6 4.8894 -3.6005 -2.9699 17 8 4.0292 -3.5337 -4.0181 18 6 4.1575 -4.4738 -4.9760 19 1 4.8580 -5.2855 -4.8457 20 6 3.3902 -4.3987 -6.1284 21 7 3.3475 -5.4188 -6.9580 22 14 2.4232 -2.8459 -6.5069 23 1 3.2923 -1.8864 -7.2343 24 1 1.2490 -3.1871 -7.3496 25 1 1.9594 -2.2298 -5.2378 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.3134 1.6214 -1.0249 30 1 1.6435 2.0081 0.5782 31 1 3.1807 1.1207 0.4466 32 1 1.7376 -3.5581 -2.2550 33 1 0.6594 -2.1465 -2.1396 34 1 1.8485 -2.2525 -3.4598 35 1 4.3546 -0.5751 -1.5892 36 1 3.8351 -1.1646 -3.1864 37 1 5.7813 -1.8834 -0.2018 38 1 7.3149 -5.5753 -1.6956 39 1 5.7483 -5.4645 -3.5900 40 1 2.8110 -5.3661 -7.7644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842050817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:41 Heat of formation + Delta-G solvation = -69.865842 kcal Electronic energy + Delta-G solvation = -27611.714733 eV Core-core repulsion = 23580.773513 eV Total energy + Delta-G solvation = -4030.941220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.074 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.59747 -37.26845 -36.99667 -36.24289 -36.17042 -35.68708 -35.35264 -32.55824 -31.17354 -29.11124 -28.29681 -27.00914 -25.38869 -24.90157 -24.35826 -21.67753 -21.05275 -18.94401 -18.07847 -17.88737 -17.42827 -17.15101 -16.34431 -15.58343 -15.30103 -15.05037 -14.81031 -14.51418 -14.18878 -14.02704 -13.75519 -13.64652 -13.03525 -12.89313 -12.76527 -12.72361 -12.63764 -12.51622 -12.46597 -12.31199 -12.00789 -11.69304 -11.65160 -11.60488 -11.58398 -11.24366 -11.02044 -10.87413 -10.49694 -10.40973 -10.17000 -9.68177 -9.29922 -8.94308 -8.84749 -8.40596 -7.43685 -6.58709 -4.23138 0.60062 1.82016 1.97326 2.77360 2.93476 3.06843 3.12755 3.16965 3.54710 4.04917 4.21983 4.39955 4.62779 4.66579 4.89758 4.94387 5.14743 5.18005 5.24226 5.36656 5.41720 5.55378 5.57478 5.63289 5.71040 5.76400 5.84757 5.92686 6.01800 6.22354 6.26230 6.31551 6.44049 6.54660 6.77515 6.81953 6.83593 7.03054 7.34958 7.61297 7.84562 8.76388 9.34984 10.48302 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.007909 B = 0.006083 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.536641 B = 4602.104460 C = 7517.185525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.018 6.018 3 C 0.085 3.915 4 S 2.780 3.220 5 O -0.976 6.976 6 O -0.970 6.970 7 N -0.997 5.997 8 C 0.091 3.909 9 C 0.184 3.816 10 C -0.183 4.183 11 C -0.046 4.046 12 C -0.120 4.120 13 Cl -0.101 7.101 14 C -0.057 4.057 15 C -0.214 4.214 16 C 0.179 3.821 17 O -0.201 6.201 18 C -0.392 4.392 19 H 0.107 0.893 20 C 0.068 3.932 21 N -0.868 5.868 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.250 1.250 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.143 0.857 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 11.930 9.719 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.858 5.858 3 C -0.061 4.061 4 S 2.788 3.212 5 O -0.960 6.960 6 O -0.954 6.954 7 N -0.837 5.837 8 C -0.054 4.054 9 C 0.060 3.940 10 C -0.187 4.187 11 C -0.065 4.065 12 C -0.147 4.147 13 Cl -0.073 7.073 14 C -0.076 4.076 15 C -0.234 4.234 16 C 0.124 3.876 17 O -0.105 6.105 18 C -0.468 4.468 19 H 0.124 0.876 20 C -0.137 4.137 21 N -0.505 5.505 22 Si 0.723 3.277 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.174 1.174 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.155 0.845 38 H 0.139 0.861 39 H 0.160 0.840 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.949 11.492 10.286 15.703 hybrid contribution -0.328 0.536 -0.678 0.924 sum -3.277 12.028 9.608 15.740 Atomic orbital electron populations 1.21547 0.78651 1.03831 1.01965 1.57855 1.15370 1.22601 1.89999 1.21542 0.97230 0.85321 1.01965 1.02169 0.73002 0.72787 0.73205 1.93584 1.65373 1.56916 1.80087 1.93572 1.43200 1.85362 1.73235 1.57799 1.22425 1.71962 1.31550 1.21690 0.88754 0.97751 0.97170 1.19879 0.79833 0.93776 1.00551 1.19137 1.03102 0.98840 0.97599 1.20706 0.92854 0.96769 0.96217 1.20398 1.00193 1.00426 0.93658 1.98288 1.63502 1.98470 1.47031 1.20746 0.97596 0.96714 0.92527 1.21219 0.99993 1.01105 1.01055 1.18918 0.88153 0.92298 0.88185 1.83587 1.47840 1.51041 1.28028 1.20757 1.25806 1.03727 0.96477 0.87585 1.24473 0.96602 0.98064 0.94511 1.69663 1.39157 1.29167 1.12491 0.86425 0.79381 0.82570 0.79353 1.19920 1.20821 1.17438 0.89626 0.92020 0.92237 0.92709 0.91101 0.89828 0.91942 0.92764 0.89110 0.89941 0.89195 0.84519 0.86089 0.83984 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 10.71 59.85 0.64 1.43 16 2 N -1.02 -11.53 3.64 -129.20 -0.47 -12.00 16 3 C 0.09 0.75 10.74 59.85 0.64 1.39 16 4 S 2.78 42.42 6.04 -107.50 -0.65 41.77 16 5 O -0.98 -17.49 15.93 -57.17 -0.91 -18.40 16 6 O -0.97 -16.20 14.46 -57.17 -0.83 -17.02 16 7 N -1.00 -15.66 3.22 -123.05 -0.40 -16.05 16 8 C 0.09 1.46 9.54 59.85 0.57 2.04 16 9 C 0.18 2.91 5.20 -5.20 -0.03 2.88 16 10 C -0.18 -3.41 5.48 -104.44 -0.57 -3.98 16 11 C -0.05 -0.83 9.16 -39.57 -0.36 -1.19 16 12 C -0.12 -2.15 6.32 -39.45 -0.25 -2.40 16 13 Cl -0.10 -1.62 28.95 -51.86 -1.50 -3.12 16 14 C -0.06 -1.03 9.82 -39.57 -0.39 -1.41 16 15 C -0.21 -4.34 9.16 -39.40 -0.36 -4.70 16 16 C 0.18 3.74 6.62 -39.11 -0.26 3.48 16 17 O -0.20 -4.56 6.63 0.01 0.00 -4.56 16 18 C -0.39 -9.91 9.91 30.89 0.31 -9.61 16 19 H 0.11 2.79 5.44 -52.48 -0.29 2.51 16 20 C 0.07 1.74 5.49 -17.52 -0.10 1.64 16 21 N -0.87 -23.31 13.96 55.48 0.77 -22.54 16 22 Si 0.90 19.02 28.66 -169.99 -4.87 14.15 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.25 -4.86 4.78 56.52 0.27 -4.59 16 26 H 0.09 0.87 6.79 -51.93 -0.35 0.52 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.08 0.77 6.99 -51.93 -0.36 0.41 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.09 1.54 5.13 -51.93 -0.27 1.27 16 35 H 0.08 1.09 7.39 -51.93 -0.38 0.70 16 36 H 0.09 1.40 7.52 -51.92 -0.39 1.01 16 37 H 0.14 2.34 7.21 -52.49 -0.38 1.96 16 38 H 0.12 1.92 8.06 -52.48 -0.42 1.49 16 39 H 0.14 2.97 5.65 -52.49 -0.30 2.67 16 40 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -29.53 355.88 -8.58 -38.11 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.94 Total: 4.74 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.15 Total: -10.43 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.09 Total: -50.59 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -1.74 Total: -39.99 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.87 Total: 14.15 kcal Atomic # 16 Polarization: 42.42 SS G_CDS: -0.65 Total: 41.77 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -1.50 Total: -3.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.53 -8.58 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842050817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.756 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds