Wall clock time and date at job start Wed Apr 1 2020 04:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46506 * 119.99954 * 2 1 4 4 S 1.65593 * 119.99925 * 179.97438 * 2 1 3 5 5 O 1.42105 * 106.40462 * 341.09696 * 4 2 1 6 6 O 1.42102 * 106.40240 * 208.17936 * 4 2 1 7 7 N 1.65599 * 107.21818 * 94.63834 * 4 2 1 8 8 C 1.46503 * 119.99924 * 275.52420 * 7 4 2 9 9 C 1.46496 * 120.00180 * 95.52830 * 7 4 2 10 10 C 1.50697 * 109.47676 * 94.17668 * 9 7 4 11 11 C 1.38114 * 120.02737 * 263.66299 * 10 9 7 12 12 C 1.38381 * 120.05569 * 179.97438 * 11 10 9 13 13 Cl 1.73601 * 119.94600 * 179.97438 * 12 11 10 14 14 C 1.38443 * 120.11113 * 359.97438 * 12 11 10 15 15 C 1.38063 * 120.05392 * 359.67976 * 14 12 11 16 16 C 1.38858 * 120.02944 * 83.63194 * 10 9 7 17 17 O 1.35766 * 120.05072 * 0.03076 * 16 10 9 18 18 C 1.34827 * 116.99552 * 173.94650 * 17 16 10 19 19 H 1.08004 * 120.00326 * 5.53177 * 18 17 16 20 20 C 1.38653 * 119.99996 * 185.53104 * 18 17 16 21 21 N 1.31559 * 120.00303 * 191.23973 * 20 18 17 22 22 Si 1.86803 * 119.99901 * 11.51891 * 20 18 17 23 23 H 1.48495 * 109.47220 * 86.59750 * 22 20 18 24 24 H 1.48495 * 109.47106 * 206.59674 * 22 20 18 25 25 H 1.48504 * 109.46991 * 326.59553 * 22 20 18 26 26 H 1.08996 * 109.47529 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46836 * 300.00173 * 1 2 3 28 28 H 1.09003 * 109.47007 * 59.99558 * 1 2 3 29 29 H 1.09000 * 109.46805 * 274.23862 * 3 2 1 30 30 H 1.08995 * 109.46838 * 34.24110 * 3 2 1 31 31 H 1.08999 * 109.47076 * 154.23989 * 3 2 1 32 32 H 1.08999 * 109.46843 * 275.08382 * 8 7 4 33 33 H 1.09002 * 109.47058 * 35.07972 * 8 7 4 34 34 H 1.08998 * 109.47193 * 155.07718 * 8 7 4 35 35 H 1.09005 * 109.46975 * 334.17296 * 9 7 4 36 36 H 1.09009 * 109.47032 * 214.18153 * 9 7 4 37 37 H 1.07998 * 119.97354 * 359.97163 * 11 10 9 38 38 H 1.08003 * 119.96992 * 179.97438 * 14 12 11 39 39 H 1.07996 * 120.02884 * 180.31921 * 15 14 12 40 40 H 0.96996 * 120.00296 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3767 -2.4263 0.4427 6 8 3.5342 -1.1805 0.6443 7 7 2.6488 -1.7954 -1.5758 8 6 1.6603 -2.4821 -2.4110 9 6 3.9521 -1.4284 -2.1352 10 6 4.8981 -2.5950 -2.0123 11 6 5.7741 -2.6652 -0.9469 12 6 6.6427 -3.7364 -0.8332 13 17 7.7431 -3.8215 0.5068 14 6 6.6357 -4.7404 -1.7864 15 6 5.7570 -4.6785 -2.8495 16 6 4.8894 -3.6005 -2.9699 17 8 4.0292 -3.5337 -4.0181 18 6 4.1575 -4.4738 -4.9760 19 1 4.8580 -5.2855 -4.8457 20 6 3.3902 -4.3987 -6.1284 21 7 3.3475 -5.4188 -6.9580 22 14 2.4232 -2.8459 -6.5069 23 1 3.2923 -1.8864 -7.2343 24 1 1.2490 -3.1871 -7.3496 25 1 1.9594 -2.2298 -5.2378 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.3134 1.6214 -1.0249 30 1 1.6435 2.0081 0.5782 31 1 3.1807 1.1207 0.4466 32 1 1.7376 -3.5581 -2.2550 33 1 0.6594 -2.1465 -2.1396 34 1 1.8485 -2.2525 -3.4598 35 1 4.3546 -0.5751 -1.5892 36 1 3.8351 -1.1646 -3.1864 37 1 5.7813 -1.8834 -0.2018 38 1 7.3149 -5.5753 -1.6956 39 1 5.7483 -5.4645 -3.5900 40 1 2.8110 -5.3661 -7.7644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842050817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:40 Heat of formation + Delta-G solvation = -89.089626 kcal Electronic energy + Delta-G solvation = -27612.548339 eV Core-core repulsion = 23580.773513 eV Total energy + Delta-G solvation = -4031.774826 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.074 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18044 -38.68333 -38.42210 -37.50772 -37.09660 -36.89378 -36.74874 -34.43560 -32.62290 -30.68018 -29.00565 -28.35267 -27.18861 -25.97935 -25.38657 -23.28582 -22.53694 -20.06626 -19.84963 -19.24475 -18.61702 -18.50647 -17.51429 -17.02514 -16.80502 -16.31604 -16.05281 -15.62981 -15.55771 -15.44109 -15.19754 -15.02987 -14.46751 -14.30994 -14.05512 -13.99583 -13.92487 -13.82195 -13.60517 -13.36915 -13.22013 -13.08652 -12.99032 -12.80097 -12.63763 -12.59794 -12.43473 -12.29365 -11.94186 -11.89599 -11.67801 -11.41218 -10.78178 -10.17779 -10.08421 -9.87604 -9.03996 -8.47766 -6.18363 -0.55062 0.31820 0.40981 1.30925 1.37542 1.42554 1.54476 1.85853 2.30201 2.41266 2.66424 2.97723 3.05721 3.24489 3.68318 3.80063 3.91210 4.00780 4.25543 4.33125 4.47153 4.48896 4.57990 4.59437 4.63634 4.76124 4.80637 4.86222 4.96510 4.98874 5.03166 5.05982 5.10275 5.27130 5.33388 5.35766 5.46963 5.68649 5.72325 5.73699 6.06607 6.86749 7.53197 8.62645 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.007909 B = 0.006083 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.536641 B = 4602.104460 C = 7517.185525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.011 6.011 3 C 0.076 3.924 4 S 2.789 3.211 5 O -1.008 7.008 6 O -0.987 6.987 7 N -1.000 6.000 8 C 0.092 3.908 9 C 0.180 3.820 10 C -0.176 4.176 11 C -0.050 4.050 12 C -0.114 4.114 13 Cl -0.077 7.077 14 C -0.057 4.057 15 C -0.229 4.229 16 C 0.154 3.846 17 O -0.209 6.209 18 C -0.399 4.399 19 H 0.079 0.921 20 C 0.017 3.983 21 N -0.918 5.918 22 Si 0.955 3.045 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.224 1.224 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.152 0.848 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 15.014 11.469 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.855 5.855 3 C -0.068 4.068 4 S 2.798 3.202 5 O -0.992 6.992 6 O -0.971 6.971 7 N -0.838 5.838 8 C -0.053 4.053 9 C 0.055 3.945 10 C -0.179 4.179 11 C -0.069 4.069 12 C -0.141 4.141 13 Cl -0.048 7.048 14 C -0.076 4.076 15 C -0.248 4.248 16 C 0.103 3.897 17 O -0.114 6.114 18 C -0.475 4.475 19 H 0.096 0.904 20 C -0.183 4.183 21 N -0.557 5.557 22 Si 0.777 3.223 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.147 1.147 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.143 0.857 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.388 14.580 12.087 19.239 hybrid contribution -0.013 -0.402 -0.939 1.022 sum -3.401 14.178 11.147 18.353 Atomic orbital electron populations 1.21785 0.77164 1.03675 1.04165 1.57572 1.16231 1.22020 1.89633 1.21812 0.97087 0.84401 1.03547 1.01686 0.72533 0.73178 0.72815 1.93543 1.66058 1.58967 1.80613 1.93537 1.44248 1.85768 1.73556 1.57766 1.22260 1.72257 1.31553 1.21649 0.90462 0.96367 0.96865 1.20048 0.79478 0.93400 1.01563 1.19524 1.03094 0.98862 0.96426 1.20948 0.92544 0.97176 0.96274 1.20621 0.99849 0.99835 0.93825 1.98301 1.62538 1.98396 1.45614 1.20923 0.97309 0.97564 0.91777 1.21258 1.00963 1.00904 1.01674 1.19327 0.88650 0.93355 0.88407 1.83555 1.49079 1.50518 1.28237 1.20634 1.25465 1.03804 0.97564 0.90385 1.25273 0.97767 1.01058 0.94176 1.69762 1.41155 1.31363 1.13457 0.85543 0.77952 0.78659 0.80169 1.19718 1.20549 1.14691 0.90967 0.89990 0.89947 0.91069 0.88589 0.90439 0.94663 0.89832 0.89855 0.86873 0.88795 0.83018 0.83892 0.85662 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.71 127.77 1.37 2.54 16 2 N -1.01 -19.64 3.64 -562.67 -2.05 -21.69 16 3 C 0.08 1.04 10.74 127.77 1.37 2.41 16 4 S 2.79 79.50 6.04 -56.49 -0.34 79.16 16 5 O -1.01 -35.09 15.93 -128.00 -2.04 -37.13 16 6 O -0.99 -30.74 14.46 -128.00 -1.85 -32.59 16 7 N -1.00 -29.56 3.22 -543.21 -1.75 -31.31 16 8 C 0.09 2.84 9.54 127.77 1.22 4.06 16 9 C 0.18 5.30 5.20 85.63 0.45 5.74 16 10 C -0.18 -6.33 5.48 -19.75 -0.11 -6.44 16 11 C -0.05 -1.71 9.16 22.27 0.20 -1.50 16 12 C -0.11 -3.91 6.32 22.35 0.14 -3.76 16 13 Cl -0.08 -2.28 28.95 -2.72 -0.08 -2.36 16 14 C -0.06 -2.02 9.82 22.28 0.22 -1.80 16 15 C -0.23 -9.51 9.16 22.39 0.21 -9.30 16 16 C 0.15 6.54 6.62 22.58 0.15 6.69 16 17 O -0.21 -9.64 6.63 -22.89 -0.15 -9.80 16 18 C -0.40 -21.05 9.91 67.92 0.67 -20.38 16 19 H 0.08 4.43 5.44 -2.91 -0.02 4.42 16 20 C 0.02 0.88 5.49 84.83 0.47 1.35 16 21 N -0.92 -51.49 13.96 21.61 0.30 -51.18 16 22 Si 0.95 39.27 28.66 68.60 1.97 41.24 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 24 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.22 -8.12 4.78 99.48 0.48 -7.65 16 26 H 0.07 1.31 6.79 -2.39 -0.02 1.30 16 27 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.08 1.17 6.99 -2.39 -0.02 1.16 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 34 H 0.08 2.69 5.13 -2.39 -0.01 2.67 16 35 H 0.11 2.61 7.39 -2.38 -0.02 2.59 16 36 H 0.09 2.72 7.52 -2.38 -0.02 2.71 16 37 H 0.15 4.76 7.21 -2.91 -0.02 4.74 16 38 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.13 5.61 5.65 -2.91 -0.02 5.59 16 40 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -65.72 355.88 1.21 -64.52 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.84 Total: 21.55 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 6.36 Total: -20.41 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -3.50 Total: -104.18 kcal Atomic # 8 Polarization: -75.47 SS G_CDS: -4.04 Total: -79.52 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.97 Total: 41.24 kcal Atomic # 16 Polarization: 79.50 SS G_CDS: -0.34 Total: 79.16 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.08 Total: -2.36 kcal Total: -65.72 1.21 -64.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842050817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.574 kcal (2) G-P(sol) polarization free energy of solvation -65.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds