Wall clock time and date at job start Wed Apr 1 2020 04:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00146 * 2 1 4 4 C 1.52998 * 109.46917 * 66.04073 * 3 2 1 5 5 S 1.81401 * 109.47269 * 180.02562 * 4 3 2 6 6 N 1.65596 * 104.45357 * 180.02562 * 5 4 3 7 7 O 1.42097 * 110.54262 * 291.63065 * 5 4 3 8 8 O 1.42099 * 110.54074 * 68.37175 * 5 4 3 9 9 C 1.46900 * 111.00330 * 236.04219 * 2 1 3 10 10 C 1.50696 * 109.47094 * 293.95463 * 9 2 1 11 11 C 1.38109 * 120.03036 * 259.72236 * 10 9 2 12 12 C 1.38392 * 120.05515 * 179.79760 * 11 10 9 13 13 Cl 1.73599 * 119.94405 * 180.23474 * 12 11 10 14 14 C 1.38432 * 120.11387 * 0.45619 * 12 11 10 15 15 C 1.38070 * 120.05146 * 359.79728 * 14 12 11 16 16 C 1.38857 * 120.02593 * 80.00248 * 10 9 2 17 17 O 1.35766 * 120.05933 * 359.97438 * 16 10 9 18 18 C 1.34822 * 117.00337 * 174.36299 * 17 16 10 19 19 H 1.07998 * 119.99846 * 5.07836 * 18 17 16 20 20 C 1.38648 * 119.99958 * 185.07916 * 18 17 16 21 21 N 1.31558 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00030 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47229 * 59.99987 * 22 20 18 24 24 H 1.48500 * 109.47233 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47287 * 300.00192 * 22 20 18 26 26 H 1.09003 * 109.47348 * 183.95387 * 1 2 3 27 27 H 1.08993 * 109.47596 * 303.95684 * 1 2 3 28 28 H 1.09004 * 109.46946 * 63.95589 * 1 2 3 29 29 H 1.08995 * 109.46866 * 186.03834 * 3 2 1 30 30 H 1.09001 * 109.46851 * 306.04641 * 3 2 1 31 31 H 1.09001 * 109.47542 * 300.00167 * 4 3 2 32 32 H 1.09001 * 109.47123 * 60.00093 * 4 3 2 33 33 H 0.97001 * 119.99693 * 359.97438 * 6 5 4 34 34 H 0.97001 * 120.00332 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47183 * 53.95654 * 9 2 1 36 36 H 1.08996 * 109.47136 * 173.95488 * 9 2 1 37 37 H 1.07996 * 119.97184 * 0.02565 * 11 10 9 38 38 H 1.07996 * 119.97836 * 179.77228 * 14 12 11 39 39 H 1.08008 * 120.02400 * 179.97438 * 15 14 12 40 40 H 0.96995 * 120.00123 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0574 1.3182 5 16 2.2808 3.7512 1.3180 6 7 1.8216 4.3701 2.7837 7 8 3.7007 3.7408 1.3718 8 8 1.5896 4.5501 0.3676 9 6 1.9955 -0.7660 -1.1375 10 6 1.6370 -2.2204 -0.9727 11 6 2.5754 -3.1136 -0.4941 12 6 2.2454 -4.4486 -0.3386 13 17 3.4253 -5.5678 0.2690 14 6 0.9775 -4.8940 -0.6710 15 6 0.0375 -4.0059 -1.1548 16 6 0.3647 -2.6647 -1.3074 17 8 -0.5580 -1.7896 -1.7830 18 6 -1.7329 -2.3043 -2.1981 19 1 -1.9374 -3.3567 -2.0680 20 6 -2.6785 -1.4825 -2.7921 21 7 -2.4295 -0.2004 -2.9501 22 14 -4.3061 -2.1957 -3.3680 23 1 -5.0231 -2.7900 -2.2112 24 1 -5.1359 -1.1177 -3.9634 25 1 -4.0534 -3.2465 -4.3865 26 1 -0.3634 -1.0252 0.0709 27 1 -0.3634 0.5740 0.8523 28 1 -0.3633 0.4512 -0.9234 29 1 3.0797 1.3443 -0.1081 30 1 1.5611 1.9273 -0.8309 31 1 0.5471 2.0845 1.4264 32 1 2.0656 1.5015 2.1492 33 1 1.3162 3.8224 3.4046 34 1 2.0580 5.2803 3.0214 35 1 1.5612 -0.3874 -2.0627 36 1 3.0797 -0.6611 -1.1755 37 1 3.5663 -2.7694 -0.2375 38 1 0.7236 -5.9369 -0.5523 39 1 -0.9514 -4.3540 -1.4144 40 1 -3.0909 0.3745 -3.3660 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880082016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:59 Heat of formation + Delta-G solvation = -72.217958 kcal Electronic energy + Delta-G solvation = -26378.265504 eV Core-core repulsion = 22347.222289 eV Total energy + Delta-G solvation = -4031.043215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.074 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.66081 -37.22706 -37.05203 -36.88392 -35.98446 -35.54634 -33.35783 -32.55460 -32.19814 -30.11104 -28.78942 -26.79805 -25.46122 -24.68998 -21.90795 -21.47570 -20.29380 -19.50035 -18.19208 -17.80613 -17.43835 -17.06818 -16.24680 -15.83780 -15.53931 -15.32298 -15.03610 -14.64694 -14.47332 -14.16175 -13.85398 -13.49263 -13.30943 -13.00277 -12.48702 -12.27616 -12.23379 -12.15601 -12.08519 -12.01051 -11.87427 -11.63445 -11.26059 -11.20764 -11.04063 -10.95054 -10.85884 -10.67108 -10.61293 -10.56476 -10.42743 -10.29024 -9.54695 -8.94584 -8.39481 -7.93076 -7.32251 -6.63084 -4.21138 0.13516 1.89645 2.01777 2.74805 2.77768 3.03192 3.04821 3.07477 3.50516 3.82341 4.13099 4.26135 4.46914 4.62439 4.86032 4.92045 5.02946 5.28576 5.32748 5.47072 5.56310 5.65212 5.67904 5.76249 5.81675 5.99709 6.10281 6.19736 6.36019 6.52063 6.58112 6.78790 6.82413 6.86375 6.99813 7.05101 7.14999 7.40016 7.42098 7.49614 7.81427 8.82883 9.45334 10.53143 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.007417 B = 0.003896 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3774.100061 B = 7185.531599 C =10565.811331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.527 5.527 3 C 0.064 3.936 4 C -0.613 4.613 5 S 2.614 3.386 6 N -1.253 6.253 7 O -0.967 6.967 8 O -0.963 6.963 9 C 0.110 3.890 10 C -0.143 4.143 11 C -0.047 4.047 12 C -0.123 4.123 13 Cl -0.106 7.106 14 C -0.060 4.060 15 C -0.224 4.224 16 C 0.159 3.841 17 O -0.160 6.160 18 C -0.398 4.398 19 H 0.092 0.908 20 C 0.046 3.954 21 N -0.855 5.855 22 Si 0.939 3.061 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.412 0.588 34 H 0.418 0.582 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.136 0.864 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.767 2.236 9.114 11.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.252 5.252 3 C -0.066 4.066 4 C -0.744 4.744 5 S 2.706 3.294 6 N -0.926 5.926 7 O -0.956 6.956 8 O -0.952 6.952 9 C -0.017 4.017 10 C -0.145 4.145 11 C -0.066 4.066 12 C -0.150 4.150 13 Cl -0.078 7.078 14 C -0.079 4.079 15 C -0.244 4.244 16 C 0.104 3.896 17 O -0.063 6.063 18 C -0.474 4.474 19 H 0.109 0.891 20 C -0.159 4.159 21 N -0.488 5.488 22 Si 0.763 3.237 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.238 0.762 34 H 0.247 0.753 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.153 0.847 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.450 2.806 8.582 11.096 hybrid contribution -1.631 -0.630 -0.133 1.753 sum 4.819 2.176 8.449 9.967 Atomic orbital electron populations 1.22697 0.85123 1.04185 1.00763 1.62244 1.09889 1.09936 1.43123 1.21678 1.00913 0.91671 0.92376 1.30453 1.13946 1.21552 1.08406 1.04702 0.74755 0.76837 0.73101 1.53152 1.74782 1.26345 1.38296 1.93602 1.29737 1.86619 1.85607 1.93625 1.75128 1.65873 1.60603 1.20737 0.98828 0.89866 0.92240 1.18639 0.91881 0.94967 1.09054 1.20392 0.98714 0.90540 0.96972 1.20293 0.91267 0.90503 1.12951 1.98281 1.59074 1.63074 1.87385 1.20643 0.91251 0.99126 0.96906 1.21086 1.00966 0.93204 1.09095 1.19170 0.89127 0.89063 0.92221 1.84121 1.22775 1.31758 1.67635 1.21295 0.90409 0.95594 1.40077 0.89068 1.25232 0.99364 0.95264 0.96077 1.69977 1.35469 1.03751 1.39646 0.85810 0.80048 0.78560 0.79259 1.19470 1.20250 1.19477 0.89512 0.93493 0.92469 0.89605 0.92962 0.84433 0.83917 0.76175 0.75309 0.92834 0.90824 0.85934 0.86481 0.84690 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 7.85 60.06 0.47 0.84 16 2 N -0.53 -8.72 4.75 -244.38 -1.16 -9.88 16 3 C 0.06 0.88 4.97 -3.82 -0.02 0.86 16 4 C -0.61 -6.25 6.02 37.16 0.22 -6.02 16 5 S 2.61 27.41 5.97 -107.50 -0.64 26.77 16 6 N -1.25 -8.39 9.43 60.35 0.57 -7.82 16 7 O -0.97 -13.28 18.10 -57.54 -1.04 -14.32 16 8 O -0.96 -14.22 18.10 -57.54 -1.04 -15.26 16 9 C 0.11 1.92 4.99 -4.98 -0.02 1.90 16 10 C -0.14 -2.70 5.17 -104.44 -0.54 -3.24 16 11 C -0.05 -0.80 9.45 -39.57 -0.37 -1.17 16 12 C -0.12 -2.09 6.32 -39.45 -0.25 -2.34 16 13 Cl -0.11 -1.59 28.95 -51.86 -1.50 -3.09 16 14 C -0.06 -1.05 9.82 -39.57 -0.39 -1.44 16 15 C -0.22 -4.40 9.17 -39.40 -0.36 -4.76 16 16 C 0.16 3.37 5.37 -39.11 -0.21 3.16 16 17 O -0.16 -3.86 5.81 0.02 0.00 -3.86 16 18 C -0.40 -9.82 9.49 30.88 0.29 -9.53 16 19 H 0.09 2.11 5.20 -52.49 -0.27 1.84 16 20 C 0.05 1.15 5.49 -17.52 -0.10 1.05 16 21 N -0.85 -22.41 13.67 55.48 0.76 -21.65 16 22 Si 0.94 18.96 29.55 -169.99 -5.02 13.94 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 H 0.09 1.85 4.99 -51.93 -0.26 1.59 16 27 H 0.05 0.76 6.30 -51.93 -0.33 0.43 16 28 H 0.06 1.25 7.72 -51.93 -0.40 0.85 16 29 H 0.09 1.03 7.93 -51.93 -0.41 0.62 16 30 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 31 H 0.14 1.30 6.47 -51.92 -0.34 0.97 16 32 H 0.14 1.17 8.14 -51.92 -0.42 0.75 16 33 H 0.41 1.62 8.83 -34.46 -0.30 1.32 16 34 H 0.42 2.37 8.96 -34.47 -0.31 2.06 16 35 H 0.05 1.05 7.84 -51.93 -0.41 0.64 16 36 H 0.07 1.08 7.79 -51.93 -0.40 0.68 16 37 H 0.12 1.84 8.03 -52.49 -0.42 1.42 16 38 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.14 2.62 5.64 -52.48 -0.30 2.33 16 40 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -32.44 358.11 -9.51 -41.96 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.55 Total: 8.52 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -1.27 Total: -20.70 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.17 Total: -39.35 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -2.08 Total: -33.45 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Atomic # 16 Polarization: 27.41 SS G_CDS: -0.64 Total: 26.77 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -1.50 Total: -3.09 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.44 -9.51 -41.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880082016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.261 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds