Wall clock time and date at job start Wed Apr 1 2020 04:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00146 * 2 1 4 4 C 1.52998 * 109.46917 * 66.04073 * 3 2 1 5 5 S 1.81401 * 109.47269 * 180.02562 * 4 3 2 6 6 N 1.65596 * 104.45357 * 180.02562 * 5 4 3 7 7 O 1.42097 * 110.54262 * 291.63065 * 5 4 3 8 8 O 1.42099 * 110.54074 * 68.37175 * 5 4 3 9 9 C 1.46900 * 111.00330 * 236.04219 * 2 1 3 10 10 C 1.50696 * 109.47094 * 293.95463 * 9 2 1 11 11 C 1.38109 * 120.03036 * 259.72236 * 10 9 2 12 12 C 1.38392 * 120.05515 * 179.79760 * 11 10 9 13 13 Cl 1.73599 * 119.94405 * 180.23474 * 12 11 10 14 14 C 1.38432 * 120.11387 * 0.45619 * 12 11 10 15 15 C 1.38070 * 120.05146 * 359.79728 * 14 12 11 16 16 C 1.38857 * 120.02593 * 80.00248 * 10 9 2 17 17 O 1.35766 * 120.05933 * 359.97438 * 16 10 9 18 18 C 1.34822 * 117.00337 * 174.36299 * 17 16 10 19 19 H 1.07998 * 119.99846 * 5.07836 * 18 17 16 20 20 C 1.38648 * 119.99958 * 185.07916 * 18 17 16 21 21 N 1.31558 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00030 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47229 * 59.99987 * 22 20 18 24 24 H 1.48500 * 109.47233 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47287 * 300.00192 * 22 20 18 26 26 H 1.09003 * 109.47348 * 183.95387 * 1 2 3 27 27 H 1.08993 * 109.47596 * 303.95684 * 1 2 3 28 28 H 1.09004 * 109.46946 * 63.95589 * 1 2 3 29 29 H 1.08995 * 109.46866 * 186.03834 * 3 2 1 30 30 H 1.09001 * 109.46851 * 306.04641 * 3 2 1 31 31 H 1.09001 * 109.47542 * 300.00167 * 4 3 2 32 32 H 1.09001 * 109.47123 * 60.00093 * 4 3 2 33 33 H 0.97001 * 119.99693 * 359.97438 * 6 5 4 34 34 H 0.97001 * 120.00332 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47183 * 53.95654 * 9 2 1 36 36 H 1.08996 * 109.47136 * 173.95488 * 9 2 1 37 37 H 1.07996 * 119.97184 * 0.02565 * 11 10 9 38 38 H 1.07996 * 119.97836 * 179.77228 * 14 12 11 39 39 H 1.08008 * 120.02400 * 179.97438 * 15 14 12 40 40 H 0.96995 * 120.00123 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0574 1.3182 5 16 2.2808 3.7512 1.3180 6 7 1.8216 4.3701 2.7837 7 8 3.7007 3.7408 1.3718 8 8 1.5896 4.5501 0.3676 9 6 1.9955 -0.7660 -1.1375 10 6 1.6370 -2.2204 -0.9727 11 6 2.5754 -3.1136 -0.4941 12 6 2.2454 -4.4486 -0.3386 13 17 3.4253 -5.5678 0.2690 14 6 0.9775 -4.8940 -0.6710 15 6 0.0375 -4.0059 -1.1548 16 6 0.3647 -2.6647 -1.3074 17 8 -0.5580 -1.7896 -1.7830 18 6 -1.7329 -2.3043 -2.1981 19 1 -1.9374 -3.3567 -2.0680 20 6 -2.6785 -1.4825 -2.7921 21 7 -2.4295 -0.2004 -2.9501 22 14 -4.3061 -2.1957 -3.3680 23 1 -5.0231 -2.7900 -2.2112 24 1 -5.1359 -1.1177 -3.9634 25 1 -4.0534 -3.2465 -4.3865 26 1 -0.3634 -1.0252 0.0709 27 1 -0.3634 0.5740 0.8523 28 1 -0.3633 0.4512 -0.9234 29 1 3.0797 1.3443 -0.1081 30 1 1.5611 1.9273 -0.8309 31 1 0.5471 2.0845 1.4264 32 1 2.0656 1.5015 2.1492 33 1 1.3162 3.8224 3.4046 34 1 2.0580 5.2803 3.0214 35 1 1.5612 -0.3874 -2.0627 36 1 3.0797 -0.6611 -1.1755 37 1 3.5663 -2.7694 -0.2375 38 1 0.7236 -5.9369 -0.5523 39 1 -0.9514 -4.3540 -1.4144 40 1 -3.0909 0.3745 -3.3660 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880082016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:59 Heat of formation + Delta-G solvation = -98.196316 kcal Electronic energy + Delta-G solvation = -26379.392010 eV Core-core repulsion = 22347.222289 eV Total energy + Delta-G solvation = -4032.169721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.074 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19449 -38.61885 -38.34090 -38.05522 -36.99057 -36.91439 -34.26980 -34.01232 -33.53013 -31.40062 -30.28098 -28.29569 -27.20799 -25.94678 -23.39342 -22.82563 -21.70505 -20.34973 -19.86750 -18.81769 -18.54225 -18.20080 -17.27801 -17.02686 -16.91643 -16.72950 -16.29183 -16.20238 -15.70916 -15.51964 -15.26138 -14.90731 -14.68037 -14.53191 -13.87717 -13.66332 -13.57220 -13.29136 -13.19753 -13.14358 -13.04897 -13.00028 -12.80395 -12.63638 -12.40275 -12.26683 -12.19011 -12.15674 -11.82232 -11.79700 -11.69080 -11.25540 -11.15690 -10.70132 -9.83880 -9.36006 -8.87390 -8.44090 -6.08889 -0.74251 0.43092 0.52781 1.37804 1.39871 1.45254 1.50893 1.98587 2.17485 2.57864 2.72766 3.05795 3.27596 3.41194 3.45012 3.54739 3.86463 3.95685 4.01343 4.26633 4.31023 4.35763 4.53378 4.56054 4.60173 4.72918 4.76366 4.90484 4.96683 5.10051 5.16351 5.30740 5.36123 5.45755 5.48431 5.59598 5.95036 5.96261 6.02539 6.09442 6.39573 7.01513 7.75097 8.75182 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.007417 B = 0.003896 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3774.100061 B = 7185.531599 C =10565.811331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.517 5.517 3 C 0.049 3.951 4 C -0.603 4.603 5 S 2.642 3.358 6 N -1.236 6.236 7 O -0.997 6.997 8 O -1.010 7.010 9 C 0.109 3.891 10 C -0.147 4.147 11 C -0.044 4.044 12 C -0.113 4.113 13 Cl -0.078 7.078 14 C -0.059 4.059 15 C -0.234 4.234 16 C 0.132 3.868 17 O -0.192 6.192 18 C -0.414 4.414 19 H 0.098 0.902 20 C -0.006 4.006 21 N -0.903 5.903 22 Si 1.004 2.996 23 H -0.260 1.260 24 H -0.277 1.277 25 H -0.263 1.263 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.016 0.984 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.146 0.854 32 H 0.172 0.828 33 H 0.428 0.572 34 H 0.426 0.574 35 H 0.021 0.979 36 H 0.106 0.894 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.130 0.870 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 0.742 11.190 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.242 5.242 3 C -0.080 4.080 4 C -0.734 4.734 5 S 2.734 3.266 6 N -0.915 5.915 7 O -0.986 6.986 8 O -0.999 6.999 9 C -0.018 4.018 10 C -0.149 4.149 11 C -0.063 4.063 12 C -0.141 4.141 13 Cl -0.050 7.050 14 C -0.078 4.078 15 C -0.253 4.253 16 C 0.080 3.920 17 O -0.097 6.097 18 C -0.490 4.490 19 H 0.116 0.884 20 C -0.206 4.206 21 N -0.539 5.539 22 Si 0.825 3.175 23 H -0.184 1.184 24 H -0.202 1.202 25 H -0.188 1.188 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.034 0.966 29 H 0.125 0.875 30 H 0.055 0.945 31 H 0.164 0.836 32 H 0.190 0.810 33 H 0.258 0.742 34 H 0.257 0.743 35 H 0.039 0.961 36 H 0.124 0.876 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.881 1.283 10.694 13.346 hybrid contribution -1.789 -0.336 -0.618 1.922 sum 6.092 0.947 10.076 11.813 Atomic orbital electron populations 1.22433 0.86771 1.02459 0.99730 1.62274 1.08188 1.11550 1.42151 1.21888 1.02064 0.90120 0.93958 1.30345 1.14749 1.20858 1.07474 1.03611 0.73590 0.76335 0.73021 1.52706 1.74696 1.26946 1.37155 1.93565 1.31749 1.87071 1.86265 1.93577 1.75806 1.67495 1.63010 1.20786 1.00441 0.89321 0.91266 1.18920 0.91389 0.96071 1.08481 1.20681 0.99373 0.90299 0.95925 1.20498 0.91601 0.91054 1.10900 1.98300 1.57795 1.62007 1.86877 1.20884 0.90973 0.99996 0.95945 1.21187 1.01480 0.93112 1.09542 1.19653 0.89854 0.89755 0.92739 1.84143 1.23196 1.32650 1.69724 1.21678 0.91153 0.96047 1.40091 0.88426 1.26230 1.02632 0.95517 0.96221 1.70125 1.36698 1.05157 1.41970 0.84840 0.75880 0.77799 0.79005 1.18408 1.20238 1.18799 0.92091 0.90937 0.96566 0.87489 0.94509 0.83556 0.80973 0.74239 0.74300 0.96105 0.87566 0.83123 0.83916 0.85215 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.32 7.85 127.69 1.00 2.33 16 2 N -0.52 -16.89 4.75 -927.09 -4.41 -21.30 16 3 C 0.05 1.32 4.97 86.30 0.43 1.74 16 4 C -0.60 -11.14 6.02 71.98 0.43 -10.71 16 5 S 2.64 52.35 5.97 -56.49 -0.34 52.01 16 6 N -1.24 -13.92 9.43 37.02 0.35 -13.57 16 7 O -1.00 -26.11 18.10 -127.65 -2.31 -28.42 16 8 O -1.01 -29.93 18.10 -127.65 -2.31 -32.24 16 9 C 0.11 3.80 4.99 85.56 0.43 4.23 16 10 C -0.15 -5.46 5.17 -19.75 -0.10 -5.56 16 11 C -0.04 -1.38 9.45 22.28 0.21 -1.17 16 12 C -0.11 -3.53 6.32 22.35 0.14 -3.38 16 13 Cl -0.08 -2.04 28.95 -2.72 -0.08 -2.12 16 14 C -0.06 -1.94 9.82 22.28 0.22 -1.72 16 15 C -0.23 -9.18 9.17 22.39 0.21 -8.97 16 16 C 0.13 5.75 5.37 22.58 0.12 5.87 16 17 O -0.19 -9.79 5.81 -22.84 -0.13 -9.92 16 18 C -0.41 -21.40 9.49 67.92 0.64 -20.76 16 19 H 0.10 4.70 5.20 -2.91 -0.02 4.68 16 20 C -0.01 -0.32 5.49 84.83 0.47 0.15 16 21 N -0.90 -50.25 13.67 21.61 0.30 -49.95 16 22 Si 1.00 40.01 29.55 68.60 2.03 42.04 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 26 H 0.06 2.71 4.99 -2.39 -0.01 2.70 16 27 H 0.07 2.35 6.30 -2.39 -0.02 2.33 16 28 H 0.02 0.75 7.72 -2.38 -0.02 0.73 16 29 H 0.11 2.39 7.93 -2.39 -0.02 2.37 16 30 H 0.04 1.10 8.12 -2.39 -0.02 1.08 16 31 H 0.15 2.50 6.47 -2.39 -0.02 2.49 16 32 H 0.17 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.43 2.15 8.83 -96.75 -0.85 1.30 16 34 H 0.43 3.98 8.96 -96.74 -0.87 3.11 16 35 H 0.02 0.86 7.84 -2.39 -0.02 0.84 16 36 H 0.11 2.94 7.79 -2.39 -0.02 2.92 16 37 H 0.15 3.91 8.03 -2.91 -0.02 3.88 16 38 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.13 5.14 5.64 -2.91 -0.02 5.12 16 40 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -73.75 358.11 -3.31 -77.06 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.61 Total: 24.36 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: 4.20 Total: -37.95 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -3.76 Total: -84.82 kcal Atomic # 8 Polarization: -65.83 SS G_CDS: -4.75 Total: -70.58 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 52.35 SS G_CDS: -0.34 Total: 52.01 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.08 Total: -2.12 kcal Total: -73.75 -3.31 -77.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880082016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.133 kcal (2) G-P(sol) polarization free energy of solvation -73.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds