Wall clock time and date at job start Wed Apr 1 2020 05:52:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86801 * 120.00281 * 2 1
4 4 H 1.48504 * 109.46638 * 269.99973 * 3 2 1
5 5 H 1.48503 * 109.47226 * 29.99535 * 3 2 1
6 6 H 1.48496 * 109.47033 * 149.99720 * 3 2 1
7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99912 * 180.02562 * 7 2 1
9 9 C 1.50704 * 120.00489 * 0.02562 * 7 2 1
10 10 N 1.46492 * 109.47322 * 179.97438 * 9 7 2
11 11 C 1.34778 * 120.00122 * 180.02562 * 10 9 7
12 12 O 1.21359 * 119.99904 * 359.97438 * 11 10 9
13 13 C 1.49351 * 120.00154 * 180.02562 * 11 10 9
14 14 O 1.21370 * 120.00407 * 0.02562 * 13 11 10
15 15 N 1.34783 * 119.99798 * 179.97438 * 13 11 10
16 16 C 1.39723 * 119.99512 * 175.65550 * 15 13 11
17 17 C 1.38937 * 120.07257 * 214.80848 * 16 15 13
18 18 C 1.38090 * 119.92307 * 179.72260 * 17 16 15
19 19 C 1.38295 * 120.07440 * 0.57436 * 18 17 16
20 20 C 1.50702 * 119.92487 * 179.69957 * 19 18 17
21 21 H 1.08994 * 109.47450 * 174.98099 * 20 19 18
22 22 F 1.39903 * 109.47117 * 54.97841 * 20 19 18
23 23 C 1.53005 * 109.47327 * 294.98138 * 20 19 18
24 24 F 1.39903 * 109.47112 * 59.99764 * 23 20 19
25 25 F 1.39897 * 109.47334 * 179.97438 * 23 20 19
26 26 F 1.39903 * 109.46780 * 299.99910 * 23 20 19
27 27 C 1.38289 * 120.15671 * 359.68327 * 19 18 17
28 28 C 1.38101 * 120.07518 * 0.03776 * 27 19 18
29 29 H 0.96999 * 119.99878 * 0.02562 * 1 2 3
30 30 H 1.08996 * 109.46686 * 59.99741 * 9 7 2
31 31 H 1.08996 * 109.46907 * 299.99769 * 9 7 2
32 32 H 0.96998 * 120.00481 * 0.02562 * 10 9 7
33 33 H 0.96996 * 120.00200 * 355.37477 * 15 13 11
34 34 H 1.07999 * 120.03564 * 359.97438 * 17 16 15
35 35 H 1.08004 * 119.96489 * 180.29771 * 18 17 16
36 36 H 1.07996 * 119.96905 * 180.02562 * 27 19 18
37 37 H 1.07993 * 120.04404 * 179.97438 * 28 27 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4002
5 1 1.4467 2.6527 0.6999
6 1 3.5467 1.4401 0.7001
7 6 2.0044 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2509 -2.4992 0.0005
10 7 2.2028 -3.6127 0.0005
11 6 1.7536 -4.8834 0.0000
12 8 0.5604 -5.1051 0.0000
13 6 2.7241 -6.0186 0.0006
14 8 3.9174 -5.7969 0.0020
15 7 2.2747 -7.2893 0.0006
16 6 3.1795 -8.3502 -0.0905
17 6 2.8325 -9.5035 -0.7832
18 6 3.7313 -10.5478 -0.8762
19 6 4.9709 -10.4513 -0.2708
20 6 5.9465 -11.5957 -0.3687
21 1 6.8931 -11.3063 0.0877
22 9 6.1563 -11.9159 -1.7143
23 6 5.3790 -12.8138 0.3628
24 9 4.1640 -13.1853 -0.2230
25 9 6.2844 -13.8763 0.2715
26 9 5.1692 -12.4936 1.7085
27 6 5.3176 -9.3069 0.4240
28 6 4.4259 -8.2564 0.5161
29 1 -0.4850 0.8400 -0.0004
30 1 0.6246 -2.5571 -0.8896
31 1 0.6240 -2.5567 0.8903
32 1 3.1565 -3.4355 0.0009
33 1 1.3236 -7.4674 0.0680
34 1 1.8626 -9.5816 -1.2517
35 1 3.4641 -11.4428 -1.4185
36 1 6.2866 -9.2346 0.8952
37 1 4.6969 -7.3632 1.0591
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000890233874.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:52:15
Heat of formation + Delta-G solvation = -240.840002 kcal
Electronic energy + Delta-G solvation = -29226.897195 eV
Core-core repulsion = 24082.904912 eV
Total energy + Delta-G solvation = -5143.992283 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 348.088 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-50.75427 -48.68887 -48.16651 -47.93526 -41.02955 -39.40384 -38.04126 -35.62959
-34.39737 -32.49468 -32.26352 -31.40676 -28.71154 -27.72515 -25.23276 -23.92669
-23.39797 -22.48932 -21.47587 -20.08121 -19.22437 -19.12167 -18.84709 -18.63091
-17.75412 -16.92057 -16.76205 -16.42631 -15.83427 -15.68820 -15.16868 -15.03169
-14.95617 -14.82759 -14.80297 -14.59405 -14.51455 -14.35149 -14.31352 -14.25558
-13.99224 -13.59072 -13.52725 -13.19679 -13.14014 -12.14472 -12.11741 -11.99911
-11.81365 -11.69716 -11.30933 -11.06282 -10.96552 -10.67079 -10.37964 -9.54735
-9.39987 -9.21412 -8.89713 -8.59767 -8.19731 -6.27350 -4.35113 0.55633
1.00962 1.63706 1.97160 2.45388 2.99840 3.17234 3.20044 3.20679
3.26573 3.29374 3.44975 3.55673 3.79431 3.92081 4.06915 4.26709
4.35712 4.56533 4.62638 4.92707 4.94339 5.09556 5.12189 5.21103
5.59283 5.70747 5.92707 5.98742 6.05764 6.55404 6.84674 6.99238
7.08137 7.28861 7.47027 7.68594 7.80495 8.27425 8.46436 8.75342
9.31470 10.82632
Molecular weight = 348.09amu
Principal moments of inertia in cm(-1)
A = 0.032409 B = 0.001772 C = 0.001731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 863.741243 B =15799.823359 C =16167.944063
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.065 3.935
3 Si 0.907 3.093
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.271 1.271
7 C -0.548 4.548
8 H 0.067 0.933
9 C 0.246 3.754
10 N -0.668 5.668
11 C 0.491 3.509
12 O -0.534 6.534
13 C 0.511 3.489
14 O -0.501 6.501
15 N -0.653 5.653
16 C 0.175 3.825
17 C -0.143 4.143
18 C -0.064 4.064
19 C -0.175 4.175
20 C 0.113 3.887
21 H 0.136 0.864
22 F -0.172 7.172
23 C 0.434 3.566
24 F -0.171 7.171
25 F -0.175 7.175
26 F -0.167 7.167
27 C -0.060 4.060
28 C -0.125 4.125
29 H 0.268 0.732
30 H 0.036 0.964
31 H 0.036 0.964
32 H 0.405 0.595
33 H 0.426 0.574
34 H 0.137 0.863
35 H 0.136 0.864
36 H 0.135 0.865
37 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.240 -25.868 0.693 28.213
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.521 5.521
2 C -0.139 4.139
3 Si 0.734 3.266
4 H -0.203 1.203
5 H -0.209 1.209
6 H -0.196 1.196
7 C -0.586 4.586
8 H 0.085 0.915
9 C 0.126 3.874
10 N -0.317 5.317
11 C 0.269 3.731
12 O -0.413 6.413
13 C 0.294 3.706
14 O -0.374 6.374
15 N -0.300 5.300
16 C 0.079 3.921
17 C -0.163 4.163
18 C -0.083 4.083
19 C -0.176 4.176
20 C 0.075 3.925
21 H 0.154 0.846
22 F -0.152 7.152
23 C 0.379 3.621
24 F -0.152 7.152
25 F -0.156 7.156
26 F -0.148 7.148
27 C -0.079 4.079
28 C -0.145 4.145
29 H 0.077 0.923
30 H 0.054 0.946
31 H 0.054 0.946
32 H 0.240 0.760
33 H 0.265 0.735
34 H 0.155 0.845
35 H 0.154 0.846
36 H 0.153 0.847
37 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges 11.019 -25.630 0.667 27.906
hybrid contribution 0.267 0.624 -0.011 0.679
sum 11.286 -25.006 0.656 27.443
Atomic orbital electron populations
1.69961 1.06118 1.27585 1.48483 1.24943 0.94970 0.99563 0.94415
0.86352 0.79638 0.82254 0.78344 1.20347 1.20931 1.19614 1.21188
0.93507 0.90049 1.53860 0.91524 1.19373 0.88117 0.81411 0.98477
1.46439 1.12792 1.04938 1.67570 1.19607 0.88028 0.84467 0.80950
1.90749 1.15664 1.84468 1.50416 1.20993 0.89395 0.84161 0.76046
1.90730 1.16412 1.84561 1.45698 1.43307 1.11443 1.04075 1.71165
1.17968 0.91063 0.87716 0.95306 1.20953 1.01413 0.93339 1.00636
1.20890 0.91884 0.98667 0.96855 1.19595 0.95892 0.95830 1.06296
1.21355 1.01347 0.90010 0.79763 0.84610 1.92979 1.96029 1.93384
1.32816 1.20983 0.76942 0.85403 0.78728 1.93206 1.45842 1.92470
1.83730 1.93236 1.67025 1.59401 1.95975 1.93241 1.94887 1.92566
1.34098 1.20838 0.99518 0.91225 0.96320 1.21348 0.93119 0.99969
1.00056 0.92271 0.94639 0.94603 0.76031 0.73528 0.84510 0.84580
0.84740 0.83274
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.05 13.29 55.43 0.74 -24.31 16
2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16
3 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16
4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
7 C -0.55 -14.36 9.28 -34.44 -0.32 -14.68 16
8 H 0.07 1.65 7.60 -52.48 -0.40 1.26 16
9 C 0.25 6.16 5.43 -5.20 -0.03 6.14 16
10 N -0.67 -13.71 5.54 -61.95 -0.34 -14.05 16
11 C 0.49 9.23 7.89 -11.63 -0.09 9.14 16
12 O -0.53 -11.18 16.48 5.49 0.09 -11.09 16
13 C 0.51 7.89 7.73 -11.63 -0.09 7.80 16
14 O -0.50 -8.22 13.91 5.48 0.08 -8.14 16
15 N -0.65 -8.02 5.32 -10.29 -0.05 -8.08 16
16 C 0.17 1.95 6.30 -83.75 -0.53 1.43 16
17 C -0.14 -1.32 9.97 -39.38 -0.39 -1.72 16
18 C -0.06 -0.56 8.69 -39.61 -0.34 -0.91 16
19 C -0.17 -1.46 4.78 -104.58 -0.50 -1.96 16
20 C 0.11 0.76 3.57 -27.88 -0.10 0.67 16
21 H 0.14 0.51 7.88 -51.93 -0.41 0.10 16
22 F -0.17 -1.45 16.89 2.25 0.04 -1.42 16
23 C 0.43 3.30 2.90 37.16 0.11 3.41 16
24 F -0.17 -1.46 15.03 2.25 0.03 -1.42 16
25 F -0.18 -1.40 17.30 2.25 0.04 -1.36 16
26 F -0.17 -1.34 17.03 2.25 0.04 -1.31 16
27 C -0.06 -0.51 9.66 -39.61 -0.38 -0.90 16
28 C -0.12 -1.37 8.69 -39.37 -0.34 -1.71 16
29 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16
30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16
31 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16
32 H 0.40 7.64 7.79 -40.82 -0.32 7.32 16
33 H 0.43 4.58 8.30 -40.82 -0.34 4.25 16
34 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16
35 H 0.14 1.03 6.79 -52.48 -0.36 0.68 16
36 H 0.13 0.77 7.95 -52.49 -0.42 0.35 16
37 H 0.15 1.79 6.23 -52.49 -0.33 1.47 16
LS Contribution 347.18 15.07 5.23 5.23
Total: -1.00 -30.41 347.18 -5.21 -35.62
By element:
Atomic # 1 Polarization: 9.61 SS G_CDS: -2.97 Total: 6.64 kcal
Atomic # 6 Polarization: 11.47 SS G_CDS: -3.11 Total: 8.36 kcal
Atomic # 7 Polarization: -46.78 SS G_CDS: 0.34 Total: -46.44 kcal
Atomic # 8 Polarization: -19.40 SS G_CDS: 0.17 Total: -19.23 kcal
Atomic # 9 Polarization: -5.66 SS G_CDS: 0.15 Total: -5.51 kcal
Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -30.41 -5.21 -35.62 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000890233874.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -205.217 kcal
(2) G-P(sol) polarization free energy of solvation -30.413 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.623 kcal
(6) G-S(sol) free energy of system = (1) + (5) -240.840 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds