Wall clock time and date at job start Wed Apr 1 2020 05:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00281 * 2 1 4 4 H 1.48504 * 109.46638 * 269.99973 * 3 2 1 5 5 H 1.48503 * 109.47226 * 29.99535 * 3 2 1 6 6 H 1.48496 * 109.47033 * 149.99720 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00489 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47322 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00122 * 180.02562 * 10 9 7 12 12 O 1.21359 * 119.99904 * 359.97438 * 11 10 9 13 13 C 1.49351 * 120.00154 * 180.02562 * 11 10 9 14 14 O 1.21370 * 120.00407 * 0.02562 * 13 11 10 15 15 N 1.34783 * 119.99798 * 179.97438 * 13 11 10 16 16 C 1.39723 * 119.99512 * 175.65550 * 15 13 11 17 17 C 1.38937 * 120.07257 * 214.80848 * 16 15 13 18 18 C 1.38090 * 119.92307 * 179.72260 * 17 16 15 19 19 C 1.38295 * 120.07440 * 0.57436 * 18 17 16 20 20 C 1.50702 * 119.92487 * 179.69957 * 19 18 17 21 21 H 1.08994 * 109.47450 * 174.98099 * 20 19 18 22 22 F 1.39903 * 109.47117 * 54.97841 * 20 19 18 23 23 C 1.53005 * 109.47327 * 294.98138 * 20 19 18 24 24 F 1.39903 * 109.47112 * 59.99764 * 23 20 19 25 25 F 1.39897 * 109.47334 * 179.97438 * 23 20 19 26 26 F 1.39903 * 109.46780 * 299.99910 * 23 20 19 27 27 C 1.38289 * 120.15671 * 359.68327 * 19 18 17 28 28 C 1.38101 * 120.07518 * 0.03776 * 27 19 18 29 29 H 0.96999 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46686 * 59.99741 * 9 7 2 31 31 H 1.08996 * 109.46907 * 299.99769 * 9 7 2 32 32 H 0.96998 * 120.00481 * 0.02562 * 10 9 7 33 33 H 0.96996 * 120.00200 * 355.37477 * 15 13 11 34 34 H 1.07999 * 120.03564 * 359.97438 * 17 16 15 35 35 H 1.08004 * 119.96489 * 180.29771 * 18 17 16 36 36 H 1.07996 * 119.96905 * 180.02562 * 27 19 18 37 37 H 1.07993 * 120.04404 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5604 -5.1051 0.0000 13 6 2.7241 -6.0186 0.0006 14 8 3.9174 -5.7969 0.0020 15 7 2.2747 -7.2893 0.0006 16 6 3.1795 -8.3502 -0.0905 17 6 2.8325 -9.5035 -0.7832 18 6 3.7313 -10.5478 -0.8762 19 6 4.9709 -10.4513 -0.2708 20 6 5.9465 -11.5957 -0.3687 21 1 6.8931 -11.3063 0.0877 22 9 6.1563 -11.9159 -1.7143 23 6 5.3790 -12.8138 0.3628 24 9 4.1640 -13.1853 -0.2230 25 9 6.2844 -13.8763 0.2715 26 9 5.1692 -12.4936 1.7085 27 6 5.3176 -9.3069 0.4240 28 6 4.4259 -8.2564 0.5161 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 3.1565 -3.4355 0.0009 33 1 1.3236 -7.4674 0.0680 34 1 1.8626 -9.5816 -1.2517 35 1 3.4641 -11.4428 -1.4185 36 1 6.2866 -9.2346 0.8952 37 1 4.6969 -7.3632 1.0591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890233874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:15 Heat of formation + Delta-G solvation = -240.840002 kcal Electronic energy + Delta-G solvation = -29226.897195 eV Core-core repulsion = 24082.904912 eV Total energy + Delta-G solvation = -5143.992283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.75427 -48.68887 -48.16651 -47.93526 -41.02955 -39.40384 -38.04126 -35.62959 -34.39737 -32.49468 -32.26352 -31.40676 -28.71154 -27.72515 -25.23276 -23.92669 -23.39797 -22.48932 -21.47587 -20.08121 -19.22437 -19.12167 -18.84709 -18.63091 -17.75412 -16.92057 -16.76205 -16.42631 -15.83427 -15.68820 -15.16868 -15.03169 -14.95617 -14.82759 -14.80297 -14.59405 -14.51455 -14.35149 -14.31352 -14.25558 -13.99224 -13.59072 -13.52725 -13.19679 -13.14014 -12.14472 -12.11741 -11.99911 -11.81365 -11.69716 -11.30933 -11.06282 -10.96552 -10.67079 -10.37964 -9.54735 -9.39987 -9.21412 -8.89713 -8.59767 -8.19731 -6.27350 -4.35113 0.55633 1.00962 1.63706 1.97160 2.45388 2.99840 3.17234 3.20044 3.20679 3.26573 3.29374 3.44975 3.55673 3.79431 3.92081 4.06915 4.26709 4.35712 4.56533 4.62638 4.92707 4.94339 5.09556 5.12189 5.21103 5.59283 5.70747 5.92707 5.98742 6.05764 6.55404 6.84674 6.99238 7.08137 7.28861 7.47027 7.68594 7.80495 8.27425 8.46436 8.75342 9.31470 10.82632 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.001772 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.741243 B =15799.823359 C =16167.944063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.246 3.754 10 N -0.668 5.668 11 C 0.491 3.509 12 O -0.534 6.534 13 C 0.511 3.489 14 O -0.501 6.501 15 N -0.653 5.653 16 C 0.175 3.825 17 C -0.143 4.143 18 C -0.064 4.064 19 C -0.175 4.175 20 C 0.113 3.887 21 H 0.136 0.864 22 F -0.172 7.172 23 C 0.434 3.566 24 F -0.171 7.171 25 F -0.175 7.175 26 F -0.167 7.167 27 C -0.060 4.060 28 C -0.125 4.125 29 H 0.268 0.732 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.405 0.595 33 H 0.426 0.574 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.240 -25.868 0.693 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.085 0.915 9 C 0.126 3.874 10 N -0.317 5.317 11 C 0.269 3.731 12 O -0.413 6.413 13 C 0.294 3.706 14 O -0.374 6.374 15 N -0.300 5.300 16 C 0.079 3.921 17 C -0.163 4.163 18 C -0.083 4.083 19 C -0.176 4.176 20 C 0.075 3.925 21 H 0.154 0.846 22 F -0.152 7.152 23 C 0.379 3.621 24 F -0.152 7.152 25 F -0.156 7.156 26 F -0.148 7.148 27 C -0.079 4.079 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.240 0.760 33 H 0.265 0.735 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.019 -25.630 0.667 27.906 hybrid contribution 0.267 0.624 -0.011 0.679 sum 11.286 -25.006 0.656 27.443 Atomic orbital electron populations 1.69961 1.06118 1.27585 1.48483 1.24943 0.94970 0.99563 0.94415 0.86352 0.79638 0.82254 0.78344 1.20347 1.20931 1.19614 1.21188 0.93507 0.90049 1.53860 0.91524 1.19373 0.88117 0.81411 0.98477 1.46439 1.12792 1.04938 1.67570 1.19607 0.88028 0.84467 0.80950 1.90749 1.15664 1.84468 1.50416 1.20993 0.89395 0.84161 0.76046 1.90730 1.16412 1.84561 1.45698 1.43307 1.11443 1.04075 1.71165 1.17968 0.91063 0.87716 0.95306 1.20953 1.01413 0.93339 1.00636 1.20890 0.91884 0.98667 0.96855 1.19595 0.95892 0.95830 1.06296 1.21355 1.01347 0.90010 0.79763 0.84610 1.92979 1.96029 1.93384 1.32816 1.20983 0.76942 0.85403 0.78728 1.93206 1.45842 1.92470 1.83730 1.93236 1.67025 1.59401 1.95975 1.93241 1.94887 1.92566 1.34098 1.20838 0.99518 0.91225 0.96320 1.21348 0.93119 0.99969 1.00056 0.92271 0.94639 0.94603 0.76031 0.73528 0.84510 0.84580 0.84740 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.05 13.29 55.43 0.74 -24.31 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.55 -14.36 9.28 -34.44 -0.32 -14.68 16 8 H 0.07 1.65 7.60 -52.48 -0.40 1.26 16 9 C 0.25 6.16 5.43 -5.20 -0.03 6.14 16 10 N -0.67 -13.71 5.54 -61.95 -0.34 -14.05 16 11 C 0.49 9.23 7.89 -11.63 -0.09 9.14 16 12 O -0.53 -11.18 16.48 5.49 0.09 -11.09 16 13 C 0.51 7.89 7.73 -11.63 -0.09 7.80 16 14 O -0.50 -8.22 13.91 5.48 0.08 -8.14 16 15 N -0.65 -8.02 5.32 -10.29 -0.05 -8.08 16 16 C 0.17 1.95 6.30 -83.75 -0.53 1.43 16 17 C -0.14 -1.32 9.97 -39.38 -0.39 -1.72 16 18 C -0.06 -0.56 8.69 -39.61 -0.34 -0.91 16 19 C -0.17 -1.46 4.78 -104.58 -0.50 -1.96 16 20 C 0.11 0.76 3.57 -27.88 -0.10 0.67 16 21 H 0.14 0.51 7.88 -51.93 -0.41 0.10 16 22 F -0.17 -1.45 16.89 2.25 0.04 -1.42 16 23 C 0.43 3.30 2.90 37.16 0.11 3.41 16 24 F -0.17 -1.46 15.03 2.25 0.03 -1.42 16 25 F -0.18 -1.40 17.30 2.25 0.04 -1.36 16 26 F -0.17 -1.34 17.03 2.25 0.04 -1.31 16 27 C -0.06 -0.51 9.66 -39.61 -0.38 -0.90 16 28 C -0.12 -1.37 8.69 -39.37 -0.34 -1.71 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.40 7.64 7.79 -40.82 -0.32 7.32 16 33 H 0.43 4.58 8.30 -40.82 -0.34 4.25 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.14 1.03 6.79 -52.48 -0.36 0.68 16 36 H 0.13 0.77 7.95 -52.49 -0.42 0.35 16 37 H 0.15 1.79 6.23 -52.49 -0.33 1.47 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -30.41 347.18 -5.21 -35.62 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -2.97 Total: 6.64 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -3.11 Total: 8.36 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.34 Total: -46.44 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.17 Total: -19.23 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.15 Total: -5.51 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.41 -5.21 -35.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890233874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.217 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds