Wall clock time and date at job start Wed Apr 1 2020 05:52:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86801 * 120.00281 * 2 1
4 4 H 1.48504 * 109.46638 * 269.99973 * 3 2 1
5 5 H 1.48503 * 109.47226 * 29.99535 * 3 2 1
6 6 H 1.48496 * 109.47033 * 149.99720 * 3 2 1
7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99912 * 180.02562 * 7 2 1
9 9 C 1.50704 * 120.00489 * 0.02562 * 7 2 1
10 10 N 1.46492 * 109.47322 * 179.97438 * 9 7 2
11 11 C 1.34778 * 120.00122 * 180.02562 * 10 9 7
12 12 O 1.21359 * 119.99904 * 359.97438 * 11 10 9
13 13 C 1.49351 * 120.00154 * 180.02562 * 11 10 9
14 14 O 1.21370 * 120.00407 * 0.02562 * 13 11 10
15 15 N 1.34783 * 119.99798 * 179.97438 * 13 11 10
16 16 C 1.39723 * 119.99512 * 175.65550 * 15 13 11
17 17 C 1.38937 * 120.07257 * 214.80848 * 16 15 13
18 18 C 1.38090 * 119.92307 * 179.72260 * 17 16 15
19 19 C 1.38295 * 120.07440 * 0.57436 * 18 17 16
20 20 C 1.50702 * 119.92487 * 179.69957 * 19 18 17
21 21 H 1.08994 * 109.47450 * 174.98099 * 20 19 18
22 22 F 1.39903 * 109.47117 * 54.97841 * 20 19 18
23 23 C 1.53005 * 109.47327 * 294.98138 * 20 19 18
24 24 F 1.39903 * 109.47112 * 59.99764 * 23 20 19
25 25 F 1.39897 * 109.47334 * 179.97438 * 23 20 19
26 26 F 1.39903 * 109.46780 * 299.99910 * 23 20 19
27 27 C 1.38289 * 120.15671 * 359.68327 * 19 18 17
28 28 C 1.38101 * 120.07518 * 0.03776 * 27 19 18
29 29 H 0.96999 * 119.99878 * 0.02562 * 1 2 3
30 30 H 1.08996 * 109.46686 * 59.99741 * 9 7 2
31 31 H 1.08996 * 109.46907 * 299.99769 * 9 7 2
32 32 H 0.96998 * 120.00481 * 0.02562 * 10 9 7
33 33 H 0.96996 * 120.00200 * 355.37477 * 15 13 11
34 34 H 1.07999 * 120.03564 * 359.97438 * 17 16 15
35 35 H 1.08004 * 119.96489 * 180.29771 * 18 17 16
36 36 H 1.07996 * 119.96905 * 180.02562 * 27 19 18
37 37 H 1.07993 * 120.04404 * 179.97438 * 28 27 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4002
5 1 1.4467 2.6527 0.6999
6 1 3.5467 1.4401 0.7001
7 6 2.0044 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2509 -2.4992 0.0005
10 7 2.2028 -3.6127 0.0005
11 6 1.7536 -4.8834 0.0000
12 8 0.5604 -5.1051 0.0000
13 6 2.7241 -6.0186 0.0006
14 8 3.9174 -5.7969 0.0020
15 7 2.2747 -7.2893 0.0006
16 6 3.1795 -8.3502 -0.0905
17 6 2.8325 -9.5035 -0.7832
18 6 3.7313 -10.5478 -0.8762
19 6 4.9709 -10.4513 -0.2708
20 6 5.9465 -11.5957 -0.3687
21 1 6.8931 -11.3063 0.0877
22 9 6.1563 -11.9159 -1.7143
23 6 5.3790 -12.8138 0.3628
24 9 4.1640 -13.1853 -0.2230
25 9 6.2844 -13.8763 0.2715
26 9 5.1692 -12.4936 1.7085
27 6 5.3176 -9.3069 0.4240
28 6 4.4259 -8.2564 0.5161
29 1 -0.4850 0.8400 -0.0004
30 1 0.6246 -2.5571 -0.8896
31 1 0.6240 -2.5567 0.8903
32 1 3.1565 -3.4355 0.0009
33 1 1.3236 -7.4674 0.0680
34 1 1.8626 -9.5816 -1.2517
35 1 3.4641 -11.4428 -1.4185
36 1 6.2866 -9.2346 0.8952
37 1 4.6969 -7.3632 1.0591
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000890233874.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:52:14
Heat of formation + Delta-G solvation = -260.796928 kcal
Electronic energy + Delta-G solvation = -29227.762592 eV
Core-core repulsion = 24082.904912 eV
Total energy + Delta-G solvation = -5144.857680 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 348.088 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-51.35722 -49.28813 -48.77819 -48.54242 -42.18763 -40.52930 -39.33915 -36.83139
-36.02173 -34.39428 -33.06158 -32.12446 -29.92827 -29.18767 -26.52447 -25.03289
-24.13233 -23.89212 -22.46183 -21.45740 -20.28421 -19.75602 -19.72218 -19.26628
-18.79067 -18.30998 -17.66842 -17.38724 -17.28587 -16.99641 -16.79649 -16.02878
-15.78647 -15.70303 -15.56985 -15.44198 -15.29247 -15.19936 -15.11815 -14.93335
-14.91934 -14.86794 -14.36269 -14.21776 -14.08256 -14.07599 -13.82989 -13.06501
-12.91290 -12.73684 -12.60189 -12.38441 -12.33544 -12.20504 -11.56867 -11.53332
-10.85226 -10.74894 -10.07854 -10.04747 -9.45436 -8.31965 -6.48026 -0.30279
0.29223 0.38761 1.20158 1.38266 1.44961 1.45605 1.57450 2.02281
2.35210 2.41787 2.53349 2.59567 2.66416 2.87816 3.03626 3.25162
3.39150 3.57304 3.73910 3.89717 3.99588 4.24431 4.36334 4.44115
4.89075 4.95866 4.96662 5.12906 5.16475 5.21506 5.24895 5.27621
5.50056 5.75833 5.77550 5.89709 6.41456 6.56414 6.68595 6.97317
7.24995 8.79534
Molecular weight = 348.09amu
Principal moments of inertia in cm(-1)
A = 0.032409 B = 0.001772 C = 0.001731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 863.741243 B =15799.823359 C =16167.944063
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.010 3.990
3 Si 0.982 3.018
4 H -0.271 1.271
5 H -0.282 1.282
6 H -0.259 1.259
7 C -0.561 4.561
8 H 0.081 0.919
9 C 0.262 3.738
10 N -0.671 5.671
11 C 0.493 3.507
12 O -0.557 6.557
13 C 0.523 3.477
14 O -0.511 6.511
15 N -0.637 5.637
16 C 0.148 3.852
17 C -0.139 4.139
18 C -0.071 4.071
19 C -0.171 4.171
20 C 0.116 3.884
21 H 0.173 0.827
22 F -0.180 7.180
23 C 0.435 3.565
24 F -0.179 7.179
25 F -0.177 7.177
26 F -0.169 7.169
27 C -0.055 4.055
28 C -0.140 4.140
29 H 0.270 0.730
30 H 0.005 0.995
31 H 0.006 0.994
32 H 0.414 0.586
33 H 0.432 0.568
34 H 0.154 0.846
35 H 0.148 0.852
36 H 0.165 0.835
37 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.428 -26.875 0.637 30.049
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.563 5.563
2 C -0.191 4.191
3 Si 0.805 3.195
4 H -0.196 1.196
5 H -0.207 1.207
6 H -0.183 1.183
7 C -0.599 4.599
8 H 0.099 0.901
9 C 0.141 3.859
10 N -0.321 5.321
11 C 0.273 3.727
12 O -0.437 6.437
13 C 0.305 3.695
14 O -0.385 6.385
15 N -0.283 5.283
16 C 0.054 3.946
17 C -0.158 4.158
18 C -0.089 4.089
19 C -0.172 4.172
20 C 0.078 3.922
21 H 0.190 0.810
22 F -0.160 7.160
23 C 0.380 3.620
24 F -0.160 7.160
25 F -0.159 7.159
26 F -0.151 7.151
27 C -0.074 4.074
28 C -0.160 4.160
29 H 0.079 0.921
30 H 0.023 0.977
31 H 0.024 0.976
32 H 0.250 0.750
33 H 0.272 0.728
34 H 0.172 0.828
35 H 0.165 0.835
36 H 0.183 0.817
37 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 13.226 -26.705 0.611 29.807
hybrid contribution -0.428 0.740 0.008 0.855
sum 12.798 -25.965 0.619 28.954
Atomic orbital electron populations
1.70096 1.07960 1.28722 1.49504 1.25962 0.95814 1.03578 0.93728
0.85191 0.78484 0.77180 0.78607 1.19640 1.20745 1.18286 1.21565
0.94303 0.90528 1.53526 0.90144 1.18842 0.88328 0.83093 0.95654
1.46149 1.12493 1.04847 1.68647 1.20166 0.88383 0.84842 0.79279
1.90729 1.17111 1.84973 1.50883 1.20078 0.88232 0.84221 0.76953
1.90735 1.16214 1.84722 1.46826 1.43104 1.12127 1.03225 1.69893
1.18156 0.91262 0.87896 0.97254 1.21126 1.02283 0.92541 0.99893
1.21137 0.92074 0.98838 0.96880 1.19823 0.95981 0.96177 1.05208
1.21537 1.02466 0.88797 0.79356 0.80996 1.92965 1.96069 1.93387
1.33628 1.21100 0.76644 0.85625 0.78631 1.93193 1.46393 1.92599
1.83828 1.93234 1.67043 1.59601 1.95976 1.93239 1.94896 1.92568
1.34366 1.21113 1.00249 0.90263 0.95753 1.21382 0.93607 1.00438
1.00525 0.92060 0.97681 0.97570 0.74955 0.72786 0.82848 0.83455
0.81711 0.84631
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.52 13.29 21.45 0.28 -53.24 16
2 C 0.01 0.52 5.46 84.65 0.46 0.98 16
3 Si 0.98 41.47 29.54 68.60 2.03 43.50 16
4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16
5 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16
6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16
7 C -0.56 -29.77 9.28 25.60 0.24 -29.53 16
8 H 0.08 3.95 7.60 -2.91 -0.02 3.92 16
9 C 0.26 13.68 5.43 85.64 0.46 14.15 16
10 N -0.67 -28.21 5.54 -468.26 -2.59 -30.80 16
11 C 0.49 18.92 7.89 87.24 0.69 19.61 16
12 O -0.56 -24.00 16.48 -3.27 -0.05 -24.05 16
13 C 0.52 16.09 7.73 87.24 0.67 16.76 16
14 O -0.51 -16.53 13.91 -3.31 -0.05 -16.57 16
15 N -0.64 -15.29 5.32 -304.83 -1.62 -16.91 16
16 C 0.15 3.14 6.30 38.22 0.24 3.38 16
17 C -0.14 -2.32 9.97 22.40 0.22 -2.10 16
18 C -0.07 -1.08 8.69 22.25 0.19 -0.89 16
19 C -0.17 -2.38 4.78 -19.84 -0.09 -2.48 16
20 C 0.12 1.22 3.57 29.85 0.11 1.32 16
21 H 0.17 0.57 7.88 -2.39 -0.02 0.55 16
22 F -0.18 -2.58 16.89 44.97 0.76 -1.82 16
23 C 0.43 5.59 2.90 71.98 0.21 5.80 16
24 F -0.18 -2.72 15.03 44.97 0.68 -2.04 16
25 F -0.18 -2.46 17.30 44.97 0.78 -1.69 16
26 F -0.17 -2.35 17.03 44.97 0.77 -1.59 16
27 C -0.06 -0.80 9.66 22.25 0.21 -0.58 16
28 C -0.14 -2.86 8.69 22.40 0.19 -2.66 16
29 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16
30 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16
31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16
32 H 0.41 15.75 7.79 -92.71 -0.72 15.03 16
33 H 0.43 9.12 8.30 -92.71 -0.77 8.35 16
34 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16
35 H 0.15 1.91 6.79 -2.91 -0.02 1.89 16
36 H 0.17 1.28 7.95 -2.91 -0.02 1.26 16
37 H 0.14 3.16 6.23 -2.91 -0.02 3.14 16
Total: -1.00 -66.43 347.18 4.48 -61.94
By element:
Atomic # 1 Polarization: 19.82 SS G_CDS: -0.31 Total: 19.51 kcal
Atomic # 6 Polarization: 19.94 SS G_CDS: 3.81 Total: 23.76 kcal
Atomic # 7 Polarization: -97.02 SS G_CDS: -3.93 Total: -100.95 kcal
Atomic # 8 Polarization: -40.52 SS G_CDS: -0.10 Total: -40.62 kcal
Atomic # 9 Polarization: -10.11 SS G_CDS: 2.98 Total: -7.14 kcal
Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal
Total: -66.43 4.48 -61.94 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000890233874.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -198.853 kcal
(2) G-P(sol) polarization free energy of solvation -66.426 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.279 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.944 kcal
(6) G-S(sol) free energy of system = (1) + (5) -260.797 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds