Wall clock time and date at job start Wed Apr 1 2020 05:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00281 * 2 1 4 4 H 1.48504 * 109.46638 * 269.99973 * 3 2 1 5 5 H 1.48503 * 109.47226 * 29.99535 * 3 2 1 6 6 H 1.48496 * 109.47033 * 149.99720 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00489 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47322 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00122 * 180.02562 * 10 9 7 12 12 O 1.21359 * 119.99904 * 359.97438 * 11 10 9 13 13 C 1.49351 * 120.00154 * 180.02562 * 11 10 9 14 14 O 1.21370 * 120.00407 * 0.02562 * 13 11 10 15 15 N 1.34783 * 119.99798 * 179.97438 * 13 11 10 16 16 C 1.39723 * 119.99512 * 175.65550 * 15 13 11 17 17 C 1.38937 * 120.07257 * 214.80848 * 16 15 13 18 18 C 1.38090 * 119.92307 * 179.72260 * 17 16 15 19 19 C 1.38295 * 120.07440 * 0.57436 * 18 17 16 20 20 C 1.50702 * 119.92487 * 179.69957 * 19 18 17 21 21 H 1.08994 * 109.47450 * 174.98099 * 20 19 18 22 22 F 1.39903 * 109.47117 * 54.97841 * 20 19 18 23 23 C 1.53005 * 109.47327 * 294.98138 * 20 19 18 24 24 F 1.39903 * 109.47112 * 59.99764 * 23 20 19 25 25 F 1.39897 * 109.47334 * 179.97438 * 23 20 19 26 26 F 1.39903 * 109.46780 * 299.99910 * 23 20 19 27 27 C 1.38289 * 120.15671 * 359.68327 * 19 18 17 28 28 C 1.38101 * 120.07518 * 0.03776 * 27 19 18 29 29 H 0.96999 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46686 * 59.99741 * 9 7 2 31 31 H 1.08996 * 109.46907 * 299.99769 * 9 7 2 32 32 H 0.96998 * 120.00481 * 0.02562 * 10 9 7 33 33 H 0.96996 * 120.00200 * 355.37477 * 15 13 11 34 34 H 1.07999 * 120.03564 * 359.97438 * 17 16 15 35 35 H 1.08004 * 119.96489 * 180.29771 * 18 17 16 36 36 H 1.07996 * 119.96905 * 180.02562 * 27 19 18 37 37 H 1.07993 * 120.04404 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5604 -5.1051 0.0000 13 6 2.7241 -6.0186 0.0006 14 8 3.9174 -5.7969 0.0020 15 7 2.2747 -7.2893 0.0006 16 6 3.1795 -8.3502 -0.0905 17 6 2.8325 -9.5035 -0.7832 18 6 3.7313 -10.5478 -0.8762 19 6 4.9709 -10.4513 -0.2708 20 6 5.9465 -11.5957 -0.3687 21 1 6.8931 -11.3063 0.0877 22 9 6.1563 -11.9159 -1.7143 23 6 5.3790 -12.8138 0.3628 24 9 4.1640 -13.1853 -0.2230 25 9 6.2844 -13.8763 0.2715 26 9 5.1692 -12.4936 1.7085 27 6 5.3176 -9.3069 0.4240 28 6 4.4259 -8.2564 0.5161 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 3.1565 -3.4355 0.0009 33 1 1.3236 -7.4674 0.0680 34 1 1.8626 -9.5816 -1.2517 35 1 3.4641 -11.4428 -1.4185 36 1 6.2866 -9.2346 0.8952 37 1 4.6969 -7.3632 1.0591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890233874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:14 Heat of formation + Delta-G solvation = -260.796928 kcal Electronic energy + Delta-G solvation = -29227.762592 eV Core-core repulsion = 24082.904912 eV Total energy + Delta-G solvation = -5144.857680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.35722 -49.28813 -48.77819 -48.54242 -42.18763 -40.52930 -39.33915 -36.83139 -36.02173 -34.39428 -33.06158 -32.12446 -29.92827 -29.18767 -26.52447 -25.03289 -24.13233 -23.89212 -22.46183 -21.45740 -20.28421 -19.75602 -19.72218 -19.26628 -18.79067 -18.30998 -17.66842 -17.38724 -17.28587 -16.99641 -16.79649 -16.02878 -15.78647 -15.70303 -15.56985 -15.44198 -15.29247 -15.19936 -15.11815 -14.93335 -14.91934 -14.86794 -14.36269 -14.21776 -14.08256 -14.07599 -13.82989 -13.06501 -12.91290 -12.73684 -12.60189 -12.38441 -12.33544 -12.20504 -11.56867 -11.53332 -10.85226 -10.74894 -10.07854 -10.04747 -9.45436 -8.31965 -6.48026 -0.30279 0.29223 0.38761 1.20158 1.38266 1.44961 1.45605 1.57450 2.02281 2.35210 2.41787 2.53349 2.59567 2.66416 2.87816 3.03626 3.25162 3.39150 3.57304 3.73910 3.89717 3.99588 4.24431 4.36334 4.44115 4.89075 4.95866 4.96662 5.12906 5.16475 5.21506 5.24895 5.27621 5.50056 5.75833 5.77550 5.89709 6.41456 6.56414 6.68595 6.97317 7.24995 8.79534 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.001772 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.741243 B =15799.823359 C =16167.944063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.982 3.018 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.262 3.738 10 N -0.671 5.671 11 C 0.493 3.507 12 O -0.557 6.557 13 C 0.523 3.477 14 O -0.511 6.511 15 N -0.637 5.637 16 C 0.148 3.852 17 C -0.139 4.139 18 C -0.071 4.071 19 C -0.171 4.171 20 C 0.116 3.884 21 H 0.173 0.827 22 F -0.180 7.180 23 C 0.435 3.565 24 F -0.179 7.179 25 F -0.177 7.177 26 F -0.169 7.169 27 C -0.055 4.055 28 C -0.140 4.140 29 H 0.270 0.730 30 H 0.005 0.995 31 H 0.006 0.994 32 H 0.414 0.586 33 H 0.432 0.568 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.165 0.835 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.428 -26.875 0.637 30.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.599 4.599 8 H 0.099 0.901 9 C 0.141 3.859 10 N -0.321 5.321 11 C 0.273 3.727 12 O -0.437 6.437 13 C 0.305 3.695 14 O -0.385 6.385 15 N -0.283 5.283 16 C 0.054 3.946 17 C -0.158 4.158 18 C -0.089 4.089 19 C -0.172 4.172 20 C 0.078 3.922 21 H 0.190 0.810 22 F -0.160 7.160 23 C 0.380 3.620 24 F -0.160 7.160 25 F -0.159 7.159 26 F -0.151 7.151 27 C -0.074 4.074 28 C -0.160 4.160 29 H 0.079 0.921 30 H 0.023 0.977 31 H 0.024 0.976 32 H 0.250 0.750 33 H 0.272 0.728 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.183 0.817 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.226 -26.705 0.611 29.807 hybrid contribution -0.428 0.740 0.008 0.855 sum 12.798 -25.965 0.619 28.954 Atomic orbital electron populations 1.70096 1.07960 1.28722 1.49504 1.25962 0.95814 1.03578 0.93728 0.85191 0.78484 0.77180 0.78607 1.19640 1.20745 1.18286 1.21565 0.94303 0.90528 1.53526 0.90144 1.18842 0.88328 0.83093 0.95654 1.46149 1.12493 1.04847 1.68647 1.20166 0.88383 0.84842 0.79279 1.90729 1.17111 1.84973 1.50883 1.20078 0.88232 0.84221 0.76953 1.90735 1.16214 1.84722 1.46826 1.43104 1.12127 1.03225 1.69893 1.18156 0.91262 0.87896 0.97254 1.21126 1.02283 0.92541 0.99893 1.21137 0.92074 0.98838 0.96880 1.19823 0.95981 0.96177 1.05208 1.21537 1.02466 0.88797 0.79356 0.80996 1.92965 1.96069 1.93387 1.33628 1.21100 0.76644 0.85625 0.78631 1.93193 1.46393 1.92599 1.83828 1.93234 1.67043 1.59601 1.95976 1.93239 1.94896 1.92568 1.34366 1.21113 1.00249 0.90263 0.95753 1.21382 0.93607 1.00438 1.00525 0.92060 0.97681 0.97570 0.74955 0.72786 0.82848 0.83455 0.81711 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.52 13.29 21.45 0.28 -53.24 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.98 41.47 29.54 68.60 2.03 43.50 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.56 -29.77 9.28 25.60 0.24 -29.53 16 8 H 0.08 3.95 7.60 -2.91 -0.02 3.92 16 9 C 0.26 13.68 5.43 85.64 0.46 14.15 16 10 N -0.67 -28.21 5.54 -468.26 -2.59 -30.80 16 11 C 0.49 18.92 7.89 87.24 0.69 19.61 16 12 O -0.56 -24.00 16.48 -3.27 -0.05 -24.05 16 13 C 0.52 16.09 7.73 87.24 0.67 16.76 16 14 O -0.51 -16.53 13.91 -3.31 -0.05 -16.57 16 15 N -0.64 -15.29 5.32 -304.83 -1.62 -16.91 16 16 C 0.15 3.14 6.30 38.22 0.24 3.38 16 17 C -0.14 -2.32 9.97 22.40 0.22 -2.10 16 18 C -0.07 -1.08 8.69 22.25 0.19 -0.89 16 19 C -0.17 -2.38 4.78 -19.84 -0.09 -2.48 16 20 C 0.12 1.22 3.57 29.85 0.11 1.32 16 21 H 0.17 0.57 7.88 -2.39 -0.02 0.55 16 22 F -0.18 -2.58 16.89 44.97 0.76 -1.82 16 23 C 0.43 5.59 2.90 71.98 0.21 5.80 16 24 F -0.18 -2.72 15.03 44.97 0.68 -2.04 16 25 F -0.18 -2.46 17.30 44.97 0.78 -1.69 16 26 F -0.17 -2.35 17.03 44.97 0.77 -1.59 16 27 C -0.06 -0.80 9.66 22.25 0.21 -0.58 16 28 C -0.14 -2.86 8.69 22.40 0.19 -2.66 16 29 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.41 15.75 7.79 -92.71 -0.72 15.03 16 33 H 0.43 9.12 8.30 -92.71 -0.77 8.35 16 34 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.15 1.91 6.79 -2.91 -0.02 1.89 16 36 H 0.17 1.28 7.95 -2.91 -0.02 1.26 16 37 H 0.14 3.16 6.23 -2.91 -0.02 3.14 16 Total: -1.00 -66.43 347.18 4.48 -61.94 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.31 Total: 19.51 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 3.81 Total: 23.76 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -3.93 Total: -100.95 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -0.10 Total: -40.62 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 2.98 Total: -7.14 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -66.43 4.48 -61.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890233874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.853 kcal (2) G-P(sol) polarization free energy of solvation -66.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds