Wall clock time and date at job start Wed Apr 1 2020 04:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00467 * 2 1 4 4 H 1.48500 * 109.47167 * 240.00264 * 3 2 1 5 5 H 1.48504 * 109.46768 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47102 * 119.99807 * 3 2 1 7 7 C 1.37875 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00234 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00190 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.46983 * 299.99606 * 9 7 2 11 11 N 1.46507 * 109.47122 * 179.97438 * 9 7 2 12 12 C 1.34775 * 119.99876 * 155.00086 * 11 9 7 13 13 O 1.21583 * 120.00144 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99585 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99665 * 179.72218 * 14 12 11 16 16 C 1.50703 * 109.47138 * 180.28062 * 15 14 12 17 17 C 1.34329 * 125.80872 * 94.71605 * 16 15 14 18 18 N 1.38933 * 107.12687 * 179.85004 * 17 16 15 19 19 C 1.37480 * 139.53922 * 180.02562 * 18 17 16 20 20 C 1.30914 * 116.31993 * 180.37208 * 19 18 17 21 21 S 1.75786 * 109.81941 * 359.97438 * 20 19 18 22 22 C 1.35154 * 106.52003 * 0.40624 * 18 17 16 23 23 N 1.32351 * 108.82795 * 359.74859 * 22 18 17 24 24 C 1.52997 * 109.47247 * 59.99565 * 9 7 2 25 25 F 1.39903 * 109.47126 * 179.97438 * 24 9 7 26 26 F 1.39894 * 109.47202 * 300.00327 * 24 9 7 27 27 F 1.39903 * 109.47248 * 60.00297 * 24 9 7 28 28 H 0.97001 * 119.99342 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99601 * 334.99426 * 11 9 7 30 30 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 31 31 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 32 32 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 33 33 H 1.08001 * 126.44103 * 359.96636 * 17 16 15 34 34 H 1.08000 * 121.83968 * 0.34789 * 19 18 17 35 35 H 1.07998 * 125.08913 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 2.2029 -3.6128 0.0005 12 6 1.8367 -4.8124 0.4938 13 8 0.7164 -4.9702 0.9392 14 7 2.7123 -5.8369 0.4933 15 6 2.3163 -7.1392 1.0350 16 6 3.4704 -8.1018 0.9232 17 6 4.3703 -8.3651 1.8851 18 7 5.2544 -9.3059 1.3718 19 6 6.3703 -10.0113 1.7556 20 6 6.8798 -10.8221 0.8629 21 16 5.9323 -10.7517 -0.6160 22 6 4.8501 -9.5641 0.1083 23 7 3.7764 -8.8358 -0.1538 24 6 0.3717 -2.5804 -1.2489 25 9 -0.3274 -3.7923 -1.2492 26 9 -0.5373 -1.5171 -1.2495 27 9 1.1764 -2.5067 -2.3910 28 1 -0.4849 0.8401 -0.0004 29 1 3.0967 -3.4867 -0.3546 30 1 3.6062 -5.7109 0.1383 31 1 2.0369 -7.0272 2.0827 32 1 1.4663 -7.5239 0.4715 33 1 4.3999 -7.9289 2.8727 34 1 6.8029 -9.9023 2.7391 35 1 7.7513 -11.4421 1.0130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932925310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:16 Heat of formation + Delta-G solvation = -56.300150 kcal Electronic energy + Delta-G solvation = -27847.489410 eV Core-core repulsion = 23174.172209 eV Total energy + Delta-G solvation = -4673.317202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.061 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.23867 -45.88658 -45.51658 -42.97834 -39.26071 -37.16337 -34.88145 -34.02399 -32.50516 -31.11686 -30.24880 -28.20879 -25.87348 -24.46957 -24.43419 -21.68670 -21.15767 -20.69263 -20.13089 -18.72924 -18.30059 -16.84088 -16.73537 -16.52659 -16.41763 -16.26815 -16.02155 -15.32324 -15.02585 -14.84339 -14.67107 -14.35385 -13.93706 -13.56791 -13.27828 -12.81069 -12.66344 -12.57150 -12.37061 -12.28598 -12.18955 -12.15369 -11.88412 -11.72692 -11.68449 -11.12351 -10.85889 -10.83313 -10.73551 -10.42193 -10.35543 -9.64389 -9.58492 -9.14758 -8.74835 -8.65942 -8.09290 -8.07284 -6.18726 -4.42408 0.50138 0.50580 1.22122 1.82691 2.15280 2.36936 3.22449 3.27111 3.28665 3.48090 3.85270 4.01886 4.21293 4.23880 4.57501 4.66787 4.72010 4.93380 4.95700 4.98845 5.04488 5.59462 5.68589 5.80386 5.93498 5.97569 6.14323 6.31086 6.46237 6.80594 6.91366 7.28043 7.41804 7.43619 7.67416 7.75140 8.54241 8.72417 9.20072 9.31471 10.72864 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.002338 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.402321 B =11974.290597 C =12448.698476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.263 3.737 10 H 0.086 0.914 11 N -0.726 5.726 12 C 0.701 3.299 13 O -0.584 6.584 14 N -0.748 5.748 15 C 0.227 3.773 16 C 0.035 3.965 17 C -0.028 4.028 18 N -0.410 5.410 19 C 0.052 3.948 20 C -0.225 4.225 21 S 0.188 5.812 22 C 0.134 3.866 23 N -0.439 5.439 24 C 0.415 3.585 25 F -0.216 7.216 26 F -0.138 7.138 27 F -0.210 7.210 28 H 0.268 0.732 29 H 0.394 0.606 30 H 0.394 0.606 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.189 0.811 34 H 0.183 0.817 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.357 -19.483 3.996 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.157 3.843 10 H 0.103 0.897 11 N -0.379 5.379 12 C 0.401 3.599 13 O -0.461 6.461 14 N -0.406 5.406 15 C 0.101 3.899 16 C -0.096 4.096 17 C -0.162 4.162 18 N -0.090 5.090 19 C -0.077 4.077 20 C -0.363 4.363 21 S 0.437 5.563 22 C -0.232 4.232 23 N -0.162 5.162 24 C 0.359 3.641 25 F -0.198 7.198 26 F -0.119 7.119 27 F -0.192 7.192 28 H 0.079 0.921 29 H 0.227 0.773 30 H 0.227 0.773 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.206 0.794 34 H 0.200 0.800 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 13.736 -20.113 2.481 24.482 hybrid contribution 1.578 1.511 1.440 2.616 sum 15.314 -18.602 3.921 24.412 Atomic orbital electron populations 1.70404 1.05820 1.27398 1.43645 1.25074 0.95150 1.00034 0.94142 0.86277 0.79320 0.81404 0.78838 1.19871 1.20898 1.19852 1.20846 0.93737 0.88169 1.56168 0.90593 1.19586 0.88239 0.84876 0.91596 0.89680 1.45251 1.17390 1.09685 1.65538 1.16000 0.84230 0.80410 0.79271 1.90919 1.19492 1.82912 1.52772 1.45030 1.16503 1.10173 1.68854 1.19199 0.91689 0.78990 1.00004 1.20809 0.98797 1.00285 0.89692 1.22711 0.93264 0.97735 1.02451 1.43938 1.21122 1.31014 1.12912 1.20401 0.88969 0.95974 1.02367 1.25127 1.07277 1.06730 0.97126 1.84907 1.19965 1.39433 1.12020 1.26310 1.01618 1.07299 0.88019 1.70569 1.10247 1.08429 1.26994 1.23169 0.80913 0.72814 0.87216 1.93077 1.81449 1.48277 1.96964 1.93395 1.68455 1.53860 1.96215 1.92984 1.74435 1.96195 1.55620 0.92098 0.77269 0.77327 0.89837 0.89871 0.79435 0.80039 0.78647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.30 9.50 55.43 0.53 -22.77 16 2 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 3 Si 0.92 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.55 -14.26 8.46 -34.44 -0.29 -14.55 16 8 H 0.08 1.84 7.74 -52.48 -0.41 1.44 16 9 C 0.26 6.69 2.21 -69.08 -0.15 6.54 16 10 H 0.09 2.41 7.58 -51.93 -0.39 2.02 16 11 N -0.73 -15.33 4.99 -59.81 -0.30 -15.63 16 12 C 0.70 14.43 8.10 -86.92 -0.70 13.73 16 13 O -0.58 -14.25 14.92 5.29 0.08 -14.17 16 14 N -0.75 -11.76 5.55 -66.41 -0.37 -12.13 16 15 C 0.23 3.18 6.20 -5.19 -0.03 3.15 16 16 C 0.04 0.44 6.43 -83.08 -0.53 -0.09 16 17 C -0.03 -0.28 11.93 -15.71 -0.19 -0.47 16 18 N -0.41 -3.92 3.19 -63.77 -0.20 -4.12 16 19 C 0.05 0.30 11.26 -16.71 -0.19 0.11 16 20 C -0.23 -1.04 11.11 29.04 0.32 -0.72 16 21 S 0.19 1.44 23.37 -107.50 -2.51 -1.07 16 22 C 0.13 1.57 8.92 -88.71 -0.79 0.77 16 23 N -0.44 -6.29 11.32 -9.77 -0.11 -6.40 16 24 C 0.42 11.01 2.81 37.16 0.10 11.11 16 25 F -0.22 -5.74 15.67 2.25 0.04 -5.71 16 26 F -0.14 -3.91 12.91 2.25 0.03 -3.88 16 27 F -0.21 -5.39 16.94 2.25 0.04 -5.35 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 7.21 8.55 -40.82 -0.35 6.86 16 30 H 0.39 5.38 8.48 -40.82 -0.35 5.03 16 31 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.20 0.18 8.06 -52.49 -0.42 -0.24 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -34.43 332.98 -8.08 -42.51 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -2.74 Total: 7.28 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: -2.55 Total: 21.20 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.45 Total: -61.05 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.08 Total: -14.17 kcal Atomic # 9 Polarization: -15.05 SS G_CDS: 0.10 Total: -14.94 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.51 Total: -1.07 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.43 -8.08 -42.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932925310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.788 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds