Wall clock time and date at job start Wed Apr 1 2020 05:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99761 * 2 1 4 4 H 1.48494 * 109.47360 * 239.99976 * 3 2 1 5 5 H 1.48492 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46606 * 120.00131 * 3 2 1 7 7 C 1.38805 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00311 * 197.35408 * 7 2 1 9 9 N 1.36936 * 120.00039 * 17.35403 * 7 2 1 10 10 C 1.46925 * 120.62981 * 27.66686 * 9 7 2 11 11 C 1.53196 * 108.77584 * 126.43584 * 10 9 7 12 12 C 1.53048 * 109.30866 * 54.63658 * 11 10 9 13 13 F 1.39906 * 109.45600 * 178.61605 * 12 11 10 14 14 F 1.39901 * 109.45213 * 58.64862 * 12 11 10 15 15 C 1.53039 * 109.53900 * 298.63313 * 12 11 10 16 16 H 1.09004 * 109.49658 * 301.38501 * 15 12 11 17 17 C 1.53000 * 109.49978 * 181.31958 * 15 12 11 18 18 N 1.46499 * 109.47281 * 175.06606 * 17 15 12 19 19 C 1.34775 * 120.00373 * 180.02562 * 18 17 15 20 20 O 1.21724 * 119.99182 * 0.02562 * 19 18 17 21 21 C 1.46515 * 120.00512 * 179.72094 * 19 18 17 22 22 C 1.36613 * 125.98227 * 180.27283 * 21 19 18 23 23 C 1.40246 * 106.74161 * 179.97438 * 22 21 19 24 24 C 1.35371 * 107.11742 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 125.63389 * 179.97438 * 24 23 22 26 26 O 1.33957 * 108.73531 * 359.77043 * 24 23 22 27 27 C 1.46937 * 120.60737 * 207.69430 * 9 7 2 28 28 H 0.97002 * 119.99779 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58742 * 6.65249 * 10 9 7 30 30 H 1.09007 * 109.58785 * 246.22296 * 10 9 7 31 31 H 1.08998 * 109.49972 * 294.68471 * 11 10 9 32 32 H 1.08999 * 109.52516 * 174.60156 * 11 10 9 33 33 H 1.09001 * 109.46849 * 55.06373 * 17 15 12 34 34 H 1.08993 * 109.47047 * 295.06763 * 17 15 12 35 35 H 0.97006 * 119.99558 * 359.97438 * 18 17 15 36 36 H 1.08007 * 126.62594 * 359.97438 * 22 21 19 37 37 H 1.07999 * 126.44227 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.56302 * 113.75539 * 27 9 7 39 39 H 1.09001 * 109.61056 * 353.33243 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2784 9 7 1.3724 -2.3608 -0.3548 10 6 0.2277 -2.3339 -1.2754 11 6 0.5001 -3.3039 -2.4295 12 6 0.8177 -4.6892 -1.8618 13 9 1.0360 -5.5851 -2.9140 14 9 -0.2593 -5.1335 -1.0873 15 6 2.0736 -4.6099 -0.9909 16 1 2.9075 -4.2406 -1.5878 17 6 2.4091 -6.0014 -0.4506 18 7 3.6749 -5.9475 0.2851 19 6 4.1723 -7.0639 0.8531 20 8 3.5701 -8.1171 0.7543 21 6 5.4413 -7.0113 1.5836 22 6 6.0573 -8.0640 2.1990 23 6 7.2375 -7.5644 2.7688 24 6 7.2907 -6.2428 2.4807 25 17 8.5554 -5.1537 2.9582 26 8 6.2085 -5.9151 1.7624 27 6 1.8198 -3.6545 0.1794 28 1 -0.4850 0.8401 0.0004 29 1 0.0986 -1.3255 -1.6685 30 1 -0.6745 -2.6402 -0.7459 31 1 1.3487 -2.9463 -3.0127 32 1 -0.3805 -3.3658 -3.0688 33 1 2.5011 -6.7012 -1.2812 34 1 1.6144 -6.3331 0.2176 35 1 4.1553 -5.1084 0.3628 36 1 5.7038 -9.0837 2.2390 37 1 7.9664 -8.1280 3.3323 38 1 1.0477 -4.0682 0.8281 39 1 2.7410 -3.5176 0.7457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046916366.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:58 Heat of formation + Delta-G solvation = -100.187777 kcal Electronic energy + Delta-G solvation = -28657.274215 eV Core-core repulsion = 24071.177750 eV Total energy + Delta-G solvation = -4586.096464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.56972 -46.51999 -43.10470 -39.66134 -37.45941 -37.39773 -35.21632 -33.59971 -32.77492 -31.21564 -30.33355 -29.76614 -26.01372 -25.21581 -23.44669 -22.40958 -22.29880 -21.43978 -20.61981 -19.65085 -18.92732 -17.34434 -16.96434 -16.90513 -16.83735 -16.42506 -15.55893 -15.42567 -15.39029 -14.83717 -14.42262 -14.13512 -13.86702 -13.62723 -13.47006 -13.44236 -13.29502 -13.16040 -12.93883 -12.83163 -12.52883 -12.25781 -11.80788 -11.73658 -11.67156 -11.60493 -11.26385 -10.84589 -10.68152 -10.60567 -10.50050 -10.49411 -10.09183 -9.96938 -9.72389 -9.30385 -8.88522 -8.63338 -6.93397 -5.96157 -3.40722 0.58932 0.70245 1.82823 2.62776 2.93152 3.14287 3.29472 3.36410 3.36494 4.15150 4.34036 4.37791 4.49299 4.57936 4.63860 4.84648 5.01180 5.13927 5.16583 5.23793 5.35146 5.36933 5.47913 5.57040 5.79532 5.83803 5.90815 6.08828 6.15016 6.23283 6.26064 6.30973 6.39196 6.64138 7.07328 7.26236 7.42076 7.63043 7.86740 8.24039 9.00366 9.62690 10.17613 11.12989 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.009061 B = 0.003502 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.544401 B = 7992.846050 C =10661.378820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.008 3.992 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.264 4.264 8 H 0.069 0.931 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.179 4.179 12 C 0.301 3.699 13 F -0.213 7.213 14 F -0.198 7.198 15 C -0.157 4.157 16 H 0.103 0.897 17 C 0.123 3.877 18 N -0.708 5.708 19 C 0.603 3.397 20 O -0.516 6.516 21 C -0.054 4.054 22 C -0.114 4.114 23 C -0.186 4.186 24 C 0.050 3.950 25 Cl 0.036 6.964 26 O -0.153 6.153 27 C 0.152 3.848 28 H 0.258 0.742 29 H 0.101 0.899 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.410 0.590 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.034 0.966 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.593 -12.463 1.946 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.191 4.191 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.393 4.393 8 H 0.087 0.913 9 N -0.311 5.311 10 C 0.044 3.956 11 C -0.219 4.219 12 C 0.264 3.736 13 F -0.194 7.194 14 F -0.179 7.179 15 C -0.178 4.178 16 H 0.122 0.878 17 C 0.000 4.000 18 N -0.359 5.359 19 C 0.388 3.612 20 O -0.394 6.394 21 C -0.107 4.107 22 C -0.135 4.135 23 C -0.206 4.206 24 C -0.028 4.028 25 Cl 0.064 6.936 26 O -0.050 6.050 27 C 0.024 3.976 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.246 0.754 36 H 0.189 0.811 37 H 0.186 0.814 38 H 0.052 0.948 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.018 -12.657 1.797 17.546 hybrid contribution 0.811 1.213 0.100 1.463 sum 12.829 -11.444 1.897 17.296 Atomic orbital electron populations 1.70010 1.05328 1.26066 1.52800 1.25068 0.95295 0.98607 1.00163 0.86336 0.78951 0.83028 0.78250 1.20851 1.21504 1.20735 1.19114 0.92816 0.84506 1.42826 0.91326 1.44085 1.35712 1.01287 1.50046 1.20853 0.89326 0.98296 0.87144 1.23276 1.03406 0.92828 1.02354 1.21009 0.84771 0.87686 0.80089 1.92961 1.95152 1.71680 1.59607 1.92970 1.58179 1.90901 1.75898 1.22994 0.97315 0.96657 1.00847 0.87837 1.21451 0.85092 0.96958 0.96518 1.45880 1.24612 1.11482 1.53888 1.16405 0.81760 0.84471 0.78573 1.90917 1.58485 1.29598 1.60385 1.22218 0.95450 0.84974 1.08025 1.21936 0.93836 1.00390 0.97333 1.21541 1.00825 0.91835 1.06364 1.22883 0.88128 0.91470 1.00345 1.98464 1.42263 1.64399 1.88433 1.84022 1.28050 1.36187 1.56718 1.20927 0.98992 0.86420 0.91211 0.93241 0.88072 0.94913 0.89547 0.90467 0.90427 0.90058 0.75409 0.81146 0.81426 0.94832 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.64 11.19 55.49 0.62 -24.02 16 2 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 3 Si 0.91 20.47 29.59 -169.99 -5.03 15.44 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.26 -6.67 9.58 -15.06 -0.14 -6.81 16 8 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 9 N -0.59 -13.53 3.00 -172.31 -0.52 -14.05 16 10 C 0.17 3.76 5.11 -3.71 -0.02 3.74 16 11 C -0.18 -3.20 5.62 -26.61 -0.15 -3.35 16 12 C 0.30 5.19 1.63 -26.69 -0.04 5.15 16 13 F -0.21 -3.57 16.41 2.25 0.04 -3.53 16 14 F -0.20 -3.71 15.73 2.25 0.04 -3.67 16 15 C -0.16 -2.50 2.03 -90.50 -0.18 -2.68 16 16 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 17 C 0.12 1.80 4.83 -4.04 -0.02 1.78 16 18 N -0.71 -9.39 5.33 -61.67 -0.33 -9.71 16 19 C 0.60 8.37 7.78 -12.93 -0.10 8.27 16 20 O -0.52 -8.47 16.86 5.17 0.09 -8.39 16 21 C -0.05 -0.65 7.13 -36.84 -0.26 -0.91 16 22 C -0.11 -1.15 10.62 -39.41 -0.42 -1.56 16 23 C -0.19 -1.59 10.84 -39.85 -0.43 -2.02 16 24 C 0.05 0.51 7.93 29.71 0.24 0.74 16 25 Cl 0.04 0.31 29.30 -51.86 -1.52 -1.21 16 26 O -0.15 -1.80 10.40 4.71 0.05 -1.75 16 27 C 0.15 2.88 5.40 -3.71 -0.02 2.86 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.10 2.49 6.04 -51.93 -0.31 2.17 16 30 H 0.03 0.78 7.92 -51.92 -0.41 0.37 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.14 7.63 -51.93 -0.40 0.74 16 34 H 0.08 1.26 7.97 -51.93 -0.41 0.85 16 35 H 0.41 4.98 7.45 -40.82 -0.30 4.68 16 36 H 0.17 1.45 8.06 -52.48 -0.42 1.03 16 37 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 39 H 0.07 1.17 7.14 -51.93 -0.37 0.80 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -28.88 351.34 -7.20 -36.08 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.28 Total: 4.21 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.64 Total: 5.32 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.22 Total: -47.78 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.14 Total: -10.14 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.07 Total: -7.20 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.52 Total: -1.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.88 -7.20 -36.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046916366.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.112 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds