Wall clock time and date at job start Wed Apr 1 2020 05:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99761 * 2 1 4 4 H 1.48494 * 109.47360 * 239.99976 * 3 2 1 5 5 H 1.48492 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46606 * 120.00131 * 3 2 1 7 7 C 1.38805 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00311 * 197.35408 * 7 2 1 9 9 N 1.36936 * 120.00039 * 17.35403 * 7 2 1 10 10 C 1.46925 * 120.62981 * 27.66686 * 9 7 2 11 11 C 1.53196 * 108.77584 * 126.43584 * 10 9 7 12 12 C 1.53048 * 109.30866 * 54.63658 * 11 10 9 13 13 F 1.39906 * 109.45600 * 178.61605 * 12 11 10 14 14 F 1.39901 * 109.45213 * 58.64862 * 12 11 10 15 15 C 1.53039 * 109.53900 * 298.63313 * 12 11 10 16 16 H 1.09004 * 109.49658 * 301.38501 * 15 12 11 17 17 C 1.53000 * 109.49978 * 181.31958 * 15 12 11 18 18 N 1.46499 * 109.47281 * 175.06606 * 17 15 12 19 19 C 1.34775 * 120.00373 * 180.02562 * 18 17 15 20 20 O 1.21724 * 119.99182 * 0.02562 * 19 18 17 21 21 C 1.46515 * 120.00512 * 179.72094 * 19 18 17 22 22 C 1.36613 * 125.98227 * 180.27283 * 21 19 18 23 23 C 1.40246 * 106.74161 * 179.97438 * 22 21 19 24 24 C 1.35371 * 107.11742 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 125.63389 * 179.97438 * 24 23 22 26 26 O 1.33957 * 108.73531 * 359.77043 * 24 23 22 27 27 C 1.46937 * 120.60737 * 207.69430 * 9 7 2 28 28 H 0.97002 * 119.99779 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58742 * 6.65249 * 10 9 7 30 30 H 1.09007 * 109.58785 * 246.22296 * 10 9 7 31 31 H 1.08998 * 109.49972 * 294.68471 * 11 10 9 32 32 H 1.08999 * 109.52516 * 174.60156 * 11 10 9 33 33 H 1.09001 * 109.46849 * 55.06373 * 17 15 12 34 34 H 1.08993 * 109.47047 * 295.06763 * 17 15 12 35 35 H 0.97006 * 119.99558 * 359.97438 * 18 17 15 36 36 H 1.08007 * 126.62594 * 359.97438 * 22 21 19 37 37 H 1.07999 * 126.44227 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.56302 * 113.75539 * 27 9 7 39 39 H 1.09001 * 109.61056 * 353.33243 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2784 9 7 1.3724 -2.3608 -0.3548 10 6 0.2277 -2.3339 -1.2754 11 6 0.5001 -3.3039 -2.4295 12 6 0.8177 -4.6892 -1.8618 13 9 1.0360 -5.5851 -2.9140 14 9 -0.2593 -5.1335 -1.0873 15 6 2.0736 -4.6099 -0.9909 16 1 2.9075 -4.2406 -1.5878 17 6 2.4091 -6.0014 -0.4506 18 7 3.6749 -5.9475 0.2851 19 6 4.1723 -7.0639 0.8531 20 8 3.5701 -8.1171 0.7543 21 6 5.4413 -7.0113 1.5836 22 6 6.0573 -8.0640 2.1990 23 6 7.2375 -7.5644 2.7688 24 6 7.2907 -6.2428 2.4807 25 17 8.5554 -5.1537 2.9582 26 8 6.2085 -5.9151 1.7624 27 6 1.8198 -3.6545 0.1794 28 1 -0.4850 0.8401 0.0004 29 1 0.0986 -1.3255 -1.6685 30 1 -0.6745 -2.6402 -0.7459 31 1 1.3487 -2.9463 -3.0127 32 1 -0.3805 -3.3658 -3.0688 33 1 2.5011 -6.7012 -1.2812 34 1 1.6144 -6.3331 0.2176 35 1 4.1553 -5.1084 0.3628 36 1 5.7038 -9.0837 2.2390 37 1 7.9664 -8.1280 3.3323 38 1 1.0477 -4.0682 0.8281 39 1 2.7410 -3.5176 0.7457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046916366.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:57 Heat of formation + Delta-G solvation = -117.026374 kcal Electronic energy + Delta-G solvation = -28658.004391 eV Core-core repulsion = 24071.177750 eV Total energy + Delta-G solvation = -4586.826641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.99754 -47.94997 -43.91070 -40.78079 -38.97712 -38.13297 -36.55989 -34.55640 -34.27300 -32.60165 -32.03417 -30.76539 -27.41013 -26.94015 -24.60337 -23.89969 -23.14711 -22.81429 -21.63764 -21.12933 -19.90882 -18.89992 -18.31616 -18.00159 -17.81852 -17.66866 -17.04861 -16.93167 -16.67484 -16.36821 -15.60133 -15.57678 -15.30696 -14.82181 -14.65873 -14.57691 -14.33562 -14.29354 -14.26514 -14.17372 -13.81337 -13.29744 -13.25816 -13.21280 -13.07131 -13.04013 -12.57168 -12.50779 -12.32865 -12.20955 -11.92224 -11.71028 -11.67322 -11.24838 -11.24542 -10.57544 -10.41783 -9.70804 -8.81915 -7.92001 -5.38442 -0.28202 -0.03911 1.07490 1.50401 1.52409 1.58733 1.65313 1.93808 2.21265 2.48795 2.77988 3.14301 3.20753 3.24717 3.49685 3.55338 3.63689 3.70878 3.89126 4.04695 4.21638 4.24689 4.36206 4.46666 4.55147 4.61254 4.72937 4.76124 4.81262 4.87006 4.99452 5.09111 5.12608 5.29252 5.45575 5.58400 5.65035 6.22168 6.32839 6.81274 7.07712 7.75098 8.27284 9.15866 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.009061 B = 0.003502 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.544401 B = 7992.846050 C =10661.378820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.043 4.043 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.276 1.276 7 C -0.267 4.267 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.169 4.169 12 C 0.302 3.698 13 F -0.205 7.205 14 F -0.208 7.208 15 C -0.141 4.141 16 H 0.119 0.881 17 C 0.134 3.866 18 N -0.704 5.704 19 C 0.605 3.395 20 O -0.547 6.547 21 C -0.081 4.081 22 C -0.103 4.103 23 C -0.173 4.173 24 C 0.041 3.959 25 Cl 0.047 6.953 26 O -0.167 6.167 27 C 0.154 3.846 28 H 0.252 0.748 29 H 0.074 0.926 30 H 0.005 0.995 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.416 0.584 36 H 0.185 0.815 37 H 0.201 0.799 38 H 0.019 0.981 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.945 -13.351 1.958 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.202 1.202 7 C -0.397 4.397 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.051 3.949 11 C -0.208 4.208 12 C 0.265 3.735 13 F -0.186 7.186 14 F -0.189 7.189 15 C -0.162 4.162 16 H 0.137 0.863 17 C 0.010 3.990 18 N -0.355 5.355 19 C 0.392 3.608 20 O -0.427 6.427 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.193 4.193 24 C -0.037 4.037 25 Cl 0.076 6.924 26 O -0.065 6.065 27 C 0.027 3.973 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.024 0.976 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.253 0.747 36 H 0.202 0.798 37 H 0.218 0.782 38 H 0.037 0.963 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.402 -13.558 1.807 19.862 hybrid contribution 0.135 1.444 0.161 1.459 sum 14.537 -12.114 1.968 19.025 Atomic orbital electron populations 1.70164 1.06736 1.26205 1.54725 1.25780 0.95914 1.01518 1.00714 0.85364 0.77564 0.79190 0.78433 1.20083 1.22411 1.20212 1.19491 0.93284 0.85393 1.41494 0.90545 1.44311 1.35654 1.02111 1.50698 1.20579 0.88370 0.97869 0.88080 1.23101 1.04775 0.92147 1.00820 1.20990 0.84908 0.87313 0.80275 1.92976 1.95083 1.71303 1.59238 1.92959 1.58801 1.90967 1.76203 1.22786 0.97197 0.96662 0.99538 0.86331 1.21249 0.85463 0.95819 0.96510 1.45793 1.24120 1.11836 1.53704 1.16571 0.82150 0.83920 0.78140 1.90893 1.59648 1.30523 1.61672 1.21921 0.95590 0.85922 1.09900 1.22265 0.93734 1.00560 0.95768 1.21922 1.00589 0.91272 1.05481 1.23270 0.87945 0.92410 1.00094 1.98470 1.41526 1.64217 1.88219 1.83979 1.28691 1.36323 1.57458 1.20969 0.98815 0.85244 0.92242 0.93903 0.90724 0.97649 0.88280 0.88816 0.89961 0.91146 0.74699 0.79761 0.78202 0.96339 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.40 11.19 21.65 0.24 -52.16 16 2 C -0.04 -2.26 4.91 84.86 0.42 -1.84 16 3 Si 0.97 42.15 29.59 68.60 2.03 44.18 16 4 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.27 -13.44 9.58 84.03 0.81 -12.63 16 8 H 0.08 3.66 7.89 -2.91 -0.02 3.63 16 9 N -0.61 -27.81 3.00 -699.07 -2.09 -29.90 16 10 C 0.18 7.97 5.11 86.36 0.44 8.41 16 11 C -0.17 -5.89 5.62 30.68 0.17 -5.72 16 12 C 0.30 10.04 1.63 30.62 0.05 10.09 16 13 F -0.21 -6.45 16.41 44.97 0.74 -5.71 16 14 F -0.21 -7.70 15.73 44.97 0.71 -6.99 16 15 C -0.14 -4.31 2.03 -10.72 -0.02 -4.33 16 16 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 17 C 0.13 3.75 4.83 86.38 0.42 4.17 16 18 N -0.70 -17.96 5.33 -467.23 -2.49 -20.45 16 19 C 0.61 16.35 7.78 86.40 0.67 17.02 16 20 O -0.55 -17.68 16.86 -4.42 -0.07 -17.76 16 21 C -0.08 -1.86 7.13 24.05 0.17 -1.69 16 22 C -0.10 -1.84 10.62 22.38 0.24 -1.60 16 23 C -0.17 -2.47 10.84 22.10 0.24 -2.23 16 24 C 0.04 0.74 7.93 67.16 0.53 1.27 16 25 Cl 0.05 0.71 29.30 -2.72 -0.08 0.63 16 26 O -0.17 -3.70 10.40 -6.08 -0.06 -3.76 16 27 C 0.15 5.75 5.40 86.36 0.47 6.21 16 28 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.07 3.77 6.04 -2.39 -0.01 3.75 16 30 H 0.01 0.27 7.92 -2.38 -0.02 0.25 16 31 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.08 2.28 7.63 -2.39 -0.02 2.27 16 34 H 0.07 2.16 7.97 -2.39 -0.02 2.14 16 35 H 0.42 9.60 7.45 -92.70 -0.69 8.90 16 36 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.02 0.76 7.92 -2.39 -0.02 0.74 16 39 H 0.08 2.69 7.14 -2.39 -0.02 2.67 16 Total: -1.00 -62.20 351.34 3.94 -58.26 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.42 Total: 16.51 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 4.60 Total: 17.14 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.34 Total: -102.50 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.14 Total: -21.52 kcal Atomic # 9 Polarization: -14.14 SS G_CDS: 1.45 Total: -12.70 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 17 Polarization: 0.71 SS G_CDS: -0.08 Total: 0.63 kcal Total: -62.20 3.94 -58.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046916366.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.767 kcal (2) G-P(sol) polarization free energy of solvation -62.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds