Wall clock time and date at job start Wed Apr 1 2020 05:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99895 * 2 1 4 4 H 1.48498 * 109.47028 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47108 * 119.99536 * 3 2 1 6 6 H 1.48495 * 109.47028 * 239.99209 * 3 2 1 7 7 C 1.38815 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99738 * 155.34742 * 7 2 1 9 9 N 1.36940 * 120.00013 * 335.35859 * 7 2 1 10 10 C 1.46926 * 120.62842 * 332.04455 * 9 7 2 11 11 C 1.53189 * 108.77454 * 233.58851 * 10 9 7 12 12 C 1.53044 * 109.31349 * 305.36694 * 11 10 9 13 13 F 1.39904 * 109.46404 * 181.38513 * 12 11 10 14 14 F 1.39901 * 109.46098 * 301.36236 * 12 11 10 15 15 C 1.53039 * 109.53646 * 61.36374 * 12 11 10 16 16 H 1.09001 * 109.49742 * 58.62117 * 15 12 11 17 17 C 1.52998 * 109.49774 * 178.68154 * 15 12 11 18 18 N 1.46497 * 109.47533 * 185.00259 * 17 15 12 19 19 C 1.34777 * 120.00304 * 180.02562 * 18 17 15 20 20 O 1.21715 * 119.99948 * 359.97438 * 19 18 17 21 21 C 1.46524 * 120.00075 * 179.97438 * 19 18 17 22 22 C 1.36614 * 125.97810 * 179.97438 * 21 19 18 23 23 C 1.40259 * 106.73692 * 179.97438 * 22 21 19 24 24 C 1.35364 * 107.11670 * 0.02562 * 23 22 21 25 25 Cl 1.73598 * 125.63122 * 179.97438 * 24 23 22 26 26 O 1.33956 * 108.73707 * 359.75415 * 24 23 22 27 27 C 1.46923 * 120.63005 * 151.76983 * 9 7 2 28 28 H 0.97004 * 119.99413 * 174.24552 * 1 2 3 29 29 H 1.08997 * 109.58911 * 353.37239 * 10 9 7 30 30 H 1.09000 * 109.58510 * 113.80353 * 10 9 7 31 31 H 1.09004 * 109.49994 * 65.31617 * 11 10 9 32 32 H 1.08997 * 109.50030 * 185.41799 * 11 10 9 33 33 H 1.09000 * 109.47586 * 305.00625 * 17 15 12 34 34 H 1.08999 * 109.47014 * 65.00362 * 17 15 12 35 35 H 0.97002 * 120.00010 * 359.97438 * 18 17 15 36 36 H 1.08000 * 126.63173 * 0.02562 * 22 21 19 37 37 H 1.07995 * 126.43827 * 180.02562 * 23 22 21 38 38 H 1.09005 * 109.58626 * 246.20004 * 27 9 7 39 39 H 1.09008 * 109.58620 * 6.62095 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1040 1.6963 -1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0165 -1.2449 -0.3896 9 7 1.4191 -2.3339 0.4955 10 6 0.3869 -2.2448 1.5373 11 6 0.7913 -3.1434 2.7102 12 6 1.0452 -4.5626 2.1965 13 9 1.3841 -5.3932 3.2700 14 9 -0.1120 -5.0485 1.5783 15 6 2.1933 -4.5429 1.1848 16 1 3.0891 -4.1417 1.6588 17 6 2.4681 -5.9666 0.6965 18 7 3.6425 -5.9644 -0.1793 19 6 4.0739 -7.1159 -0.7310 20 8 3.4881 -8.1578 -0.5012 21 6 5.2481 -7.1136 -1.6074 22 6 5.7887 -8.2041 -2.2278 23 6 6.8925 -7.7454 -2.9617 24 6 6.9779 -6.4097 -2.7597 25 17 8.1766 -5.3578 -3.4457 26 8 5.9820 -6.0327 -1.9471 27 6 1.8008 -3.6598 -0.0094 28 1 -0.4849 -0.8359 -0.0842 29 1 0.3013 -1.2136 1.8797 30 1 -0.5691 -2.5787 1.1339 31 1 1.7002 -2.7549 3.1697 32 1 -0.0108 -3.1617 3.4479 33 1 2.6546 -6.6148 1.5527 34 1 1.6035 -6.3344 0.1440 35 1 4.1091 -5.1340 -0.3628 36 1 5.4342 -9.2224 -2.1659 37 1 7.5504 -8.3452 -3.5729 38 1 0.9577 -4.1067 -0.5364 39 1 2.6484 -3.5624 -0.6879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046916367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:00 Heat of formation + Delta-G solvation = -102.694349 kcal Electronic energy + Delta-G solvation = -28704.744222 eV Core-core repulsion = 24118.539064 eV Total energy + Delta-G solvation = -4586.205157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.68429 -46.63479 -43.13031 -39.70807 -37.61234 -37.44017 -35.37202 -33.63771 -32.93772 -31.30029 -30.30411 -29.73372 -26.02651 -25.10207 -23.54059 -22.49221 -22.32992 -21.43982 -20.65985 -19.70643 -18.97923 -17.71107 -17.11150 -16.99117 -16.93905 -16.53301 -15.85615 -15.50417 -15.44943 -14.60905 -14.46568 -13.92387 -13.88462 -13.73287 -13.55902 -13.49157 -13.40579 -13.38520 -13.17103 -12.96143 -12.55768 -12.25252 -12.11237 -11.82287 -11.80925 -11.74397 -10.97837 -10.84424 -10.82060 -10.62831 -10.51876 -10.51342 -10.11881 -9.91236 -9.51460 -9.34954 -8.91522 -8.54786 -7.14714 -6.23959 -3.43734 0.56166 0.68191 1.80346 2.59008 2.89479 3.10370 3.41340 3.44009 3.62403 4.04970 4.35074 4.36909 4.42421 4.52327 4.55304 4.73959 4.98613 5.00625 5.12661 5.15607 5.28662 5.34508 5.37119 5.47376 5.71162 5.77003 5.80992 5.95222 6.06598 6.07836 6.15229 6.23182 6.27396 6.48767 6.72475 6.92096 7.21573 7.80322 7.82338 8.38622 8.88544 9.64074 10.04586 11.05171 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.009126 B = 0.003496 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.525374 B = 8007.565706 C =10624.547268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.018 4.018 3 Si 1.065 2.935 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.359 4.359 8 H 0.060 0.940 9 N -0.597 5.597 10 C 0.149 3.851 11 C -0.173 4.173 12 C 0.302 3.698 13 F -0.210 7.210 14 F -0.199 7.199 15 C -0.157 4.157 16 H 0.105 0.895 17 C 0.124 3.876 18 N -0.709 5.709 19 C 0.603 3.397 20 O -0.516 6.516 21 C -0.055 4.055 22 C -0.114 4.114 23 C -0.186 4.186 24 C 0.051 3.949 25 Cl 0.036 6.964 26 O -0.153 6.153 27 C 0.154 3.846 28 H 0.270 0.730 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.410 0.590 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.033 0.967 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.638 -13.021 -2.391 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.221 4.221 3 Si 0.894 3.106 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.488 4.488 8 H 0.078 0.922 9 N -0.319 5.319 10 C 0.023 3.977 11 C -0.213 4.213 12 C 0.265 3.735 13 F -0.191 7.191 14 F -0.180 7.180 15 C -0.178 4.178 16 H 0.123 0.877 17 C 0.000 4.000 18 N -0.359 5.359 19 C 0.388 3.612 20 O -0.394 6.394 21 C -0.108 4.108 22 C -0.134 4.134 23 C -0.206 4.206 24 C -0.028 4.028 25 Cl 0.065 6.935 26 O -0.050 6.050 27 C 0.027 3.973 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.246 0.754 36 H 0.189 0.811 37 H 0.186 0.814 38 H 0.051 0.949 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.037 -11.682 -2.103 16.905 hybrid contribution 0.624 -1.398 -0.269 1.554 sum 12.661 -13.080 -2.372 18.358 Atomic orbital electron populations 1.70803 1.06640 1.30522 1.46971 1.25921 0.96472 1.01607 0.98128 0.83524 0.74832 0.75910 0.76315 1.20970 1.21886 1.21842 1.19952 0.97508 0.88027 1.43278 0.92206 1.44174 1.45827 1.01253 1.40684 1.21012 0.91071 0.99238 0.86366 1.23140 1.04170 0.92172 1.01857 1.20965 0.82414 0.88502 0.81595 1.92969 1.92611 1.75266 1.58303 1.92972 1.51948 1.89686 1.83362 1.23062 0.98709 0.96465 0.99575 0.87721 1.21438 0.87831 0.96605 0.94125 1.45874 1.31273 1.10132 1.48656 1.16406 0.81278 0.84401 0.79073 1.90915 1.55902 1.31432 1.61103 1.22200 0.97637 0.84996 1.05933 1.21941 0.94992 1.00135 0.96351 1.21545 1.01606 0.91912 1.05504 1.22890 0.90803 0.91085 0.97998 1.98465 1.47943 1.67002 1.80078 1.84022 1.33647 1.35831 1.51499 1.21010 0.98807 0.86166 0.91327 0.91842 0.88812 0.95073 0.89158 0.90226 0.90362 0.90093 0.75400 0.81133 0.81391 0.94950 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.81 12.41 55.49 0.69 -25.12 16 2 C -0.02 -0.49 4.69 -17.43 -0.08 -0.57 16 3 Si 1.07 23.76 29.99 -169.99 -5.10 18.66 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.36 -9.23 9.49 -15.06 -0.14 -9.37 16 8 H 0.06 1.53 7.94 -52.48 -0.42 1.11 16 9 N -0.60 -13.64 2.84 -172.05 -0.49 -14.13 16 10 C 0.15 3.23 4.48 -3.71 -0.02 3.21 16 11 C -0.17 -3.05 5.62 -26.61 -0.15 -3.20 16 12 C 0.30 5.13 1.63 -26.69 -0.04 5.09 16 13 F -0.21 -3.48 16.41 2.25 0.04 -3.44 16 14 F -0.20 -3.63 15.72 2.25 0.04 -3.59 16 15 C -0.16 -2.50 2.04 -90.28 -0.18 -2.68 16 16 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 17 C 0.12 1.80 4.83 -4.04 -0.02 1.78 16 18 N -0.71 -9.43 5.33 -61.67 -0.33 -9.76 16 19 C 0.60 8.39 7.78 -12.92 -0.10 8.29 16 20 O -0.52 -8.46 16.86 5.18 0.09 -8.37 16 21 C -0.06 -0.67 7.13 -36.83 -0.26 -0.93 16 22 C -0.11 -1.14 10.62 -39.41 -0.42 -1.56 16 23 C -0.19 -1.59 10.84 -39.85 -0.43 -2.02 16 24 C 0.05 0.51 7.93 29.71 0.24 0.75 16 25 Cl 0.04 0.31 29.30 -51.86 -1.52 -1.21 16 26 O -0.15 -1.82 10.40 4.72 0.05 -1.77 16 27 C 0.15 2.92 5.42 -3.49 -0.02 2.90 16 28 H 0.27 7.74 6.69 -40.82 -0.27 7.47 16 29 H 0.09 2.26 6.31 -51.93 -0.33 1.93 16 30 H 0.03 0.70 7.64 -51.93 -0.40 0.31 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.14 7.63 -51.93 -0.40 0.74 16 34 H 0.08 1.25 7.97 -51.93 -0.41 0.83 16 35 H 0.41 5.05 7.47 -40.82 -0.30 4.75 16 36 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 39 H 0.07 1.24 7.16 -51.92 -0.37 0.87 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -29.54 350.35 -7.11 -36.65 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -4.22 Total: 5.11 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.64 Total: 1.69 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.13 Total: -49.01 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.14 Total: -10.14 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.07 Total: -7.04 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.10 Total: 18.66 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.52 Total: -1.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.54 -7.11 -36.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046916367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.043 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds