Wall clock time and date at job start Wed Apr 1 2020 05:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99895 * 2 1 4 4 H 1.48498 * 109.47028 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47108 * 119.99536 * 3 2 1 6 6 H 1.48495 * 109.47028 * 239.99209 * 3 2 1 7 7 C 1.38815 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99738 * 155.34742 * 7 2 1 9 9 N 1.36940 * 120.00013 * 335.35859 * 7 2 1 10 10 C 1.46926 * 120.62842 * 332.04455 * 9 7 2 11 11 C 1.53189 * 108.77454 * 233.58851 * 10 9 7 12 12 C 1.53044 * 109.31349 * 305.36694 * 11 10 9 13 13 F 1.39904 * 109.46404 * 181.38513 * 12 11 10 14 14 F 1.39901 * 109.46098 * 301.36236 * 12 11 10 15 15 C 1.53039 * 109.53646 * 61.36374 * 12 11 10 16 16 H 1.09001 * 109.49742 * 58.62117 * 15 12 11 17 17 C 1.52998 * 109.49774 * 178.68154 * 15 12 11 18 18 N 1.46497 * 109.47533 * 185.00259 * 17 15 12 19 19 C 1.34777 * 120.00304 * 180.02562 * 18 17 15 20 20 O 1.21715 * 119.99948 * 359.97438 * 19 18 17 21 21 C 1.46524 * 120.00075 * 179.97438 * 19 18 17 22 22 C 1.36614 * 125.97810 * 179.97438 * 21 19 18 23 23 C 1.40259 * 106.73692 * 179.97438 * 22 21 19 24 24 C 1.35364 * 107.11670 * 0.02562 * 23 22 21 25 25 Cl 1.73598 * 125.63122 * 179.97438 * 24 23 22 26 26 O 1.33956 * 108.73707 * 359.75415 * 24 23 22 27 27 C 1.46923 * 120.63005 * 151.76983 * 9 7 2 28 28 H 0.97004 * 119.99413 * 174.24552 * 1 2 3 29 29 H 1.08997 * 109.58911 * 353.37239 * 10 9 7 30 30 H 1.09000 * 109.58510 * 113.80353 * 10 9 7 31 31 H 1.09004 * 109.49994 * 65.31617 * 11 10 9 32 32 H 1.08997 * 109.50030 * 185.41799 * 11 10 9 33 33 H 1.09000 * 109.47586 * 305.00625 * 17 15 12 34 34 H 1.08999 * 109.47014 * 65.00362 * 17 15 12 35 35 H 0.97002 * 120.00010 * 359.97438 * 18 17 15 36 36 H 1.08000 * 126.63173 * 0.02562 * 22 21 19 37 37 H 1.07995 * 126.43827 * 180.02562 * 23 22 21 38 38 H 1.09005 * 109.58626 * 246.20004 * 27 9 7 39 39 H 1.09008 * 109.58620 * 6.62095 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1040 1.6963 -1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0165 -1.2449 -0.3896 9 7 1.4191 -2.3339 0.4955 10 6 0.3869 -2.2448 1.5373 11 6 0.7913 -3.1434 2.7102 12 6 1.0452 -4.5626 2.1965 13 9 1.3841 -5.3932 3.2700 14 9 -0.1120 -5.0485 1.5783 15 6 2.1933 -4.5429 1.1848 16 1 3.0891 -4.1417 1.6588 17 6 2.4681 -5.9666 0.6965 18 7 3.6425 -5.9644 -0.1793 19 6 4.0739 -7.1159 -0.7310 20 8 3.4881 -8.1578 -0.5012 21 6 5.2481 -7.1136 -1.6074 22 6 5.7887 -8.2041 -2.2278 23 6 6.8925 -7.7454 -2.9617 24 6 6.9779 -6.4097 -2.7597 25 17 8.1766 -5.3578 -3.4457 26 8 5.9820 -6.0327 -1.9471 27 6 1.8008 -3.6598 -0.0094 28 1 -0.4849 -0.8359 -0.0842 29 1 0.3013 -1.2136 1.8797 30 1 -0.5691 -2.5787 1.1339 31 1 1.7002 -2.7549 3.1697 32 1 -0.0108 -3.1617 3.4479 33 1 2.6546 -6.6148 1.5527 34 1 1.6035 -6.3344 0.1440 35 1 4.1091 -5.1340 -0.3628 36 1 5.4342 -9.2224 -2.1659 37 1 7.5504 -8.3452 -3.5729 38 1 0.9577 -4.1067 -0.5364 39 1 2.6484 -3.5624 -0.6879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046916367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:00 Heat of formation + Delta-G solvation = -120.074408 kcal Electronic energy + Delta-G solvation = -28705.497878 eV Core-core repulsion = 24118.539064 eV Total energy + Delta-G solvation = -4586.958813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.09245 -48.04309 -43.94120 -40.83279 -39.17867 -38.15572 -36.72605 -34.68992 -34.32880 -32.69141 -31.95227 -30.78398 -27.33213 -26.94895 -24.72053 -23.94286 -23.17187 -22.83405 -21.68509 -21.19320 -19.99972 -19.45105 -18.40647 -18.06561 -17.85473 -17.78518 -17.31337 -16.79872 -16.75026 -16.01653 -15.78132 -15.54817 -15.41356 -14.99795 -14.92026 -14.60254 -14.52074 -14.35540 -14.32732 -14.20207 -13.75185 -13.65769 -13.40830 -13.29457 -13.15259 -12.72899 -12.53907 -12.52957 -12.31817 -12.19563 -11.88996 -11.77431 -11.39330 -11.36498 -11.27560 -10.53783 -10.44767 -9.73903 -9.06589 -8.29048 -5.46777 -0.31477 -0.06334 1.04650 1.60607 1.62360 1.67974 1.86863 1.89889 2.17140 2.59377 2.70935 3.02532 3.08898 3.18465 3.38637 3.45639 3.58516 3.67095 3.76266 3.92389 4.11047 4.21446 4.32827 4.34529 4.37651 4.51639 4.61635 4.69030 4.72202 4.73223 4.88964 4.97955 5.03078 5.07279 5.19231 5.42526 5.81288 6.16902 6.34791 6.76201 6.94383 7.68739 8.11142 8.97960 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.009126 B = 0.003496 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.525374 B = 8007.565706 C =10624.547268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.069 4.069 3 Si 1.113 2.887 4 H -0.296 1.296 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.358 4.358 8 H 0.062 0.938 9 N -0.613 5.613 10 C 0.156 3.844 11 C -0.164 4.164 12 C 0.303 3.697 13 F -0.202 7.202 14 F -0.207 7.207 15 C -0.141 4.141 16 H 0.117 0.883 17 C 0.134 3.866 18 N -0.705 5.705 19 C 0.606 3.394 20 O -0.546 6.546 21 C -0.083 4.083 22 C -0.102 4.102 23 C -0.173 4.173 24 C 0.041 3.959 25 Cl 0.047 6.953 26 O -0.168 6.168 27 C 0.156 3.844 28 H 0.255 0.745 29 H 0.066 0.934 30 H 0.013 0.987 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.415 0.585 36 H 0.186 0.814 37 H 0.202 0.798 38 H 0.020 0.980 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.932 -13.932 -2.458 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.266 4.266 3 Si 0.938 3.062 4 H -0.222 1.222 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.487 4.487 8 H 0.080 0.920 9 N -0.336 5.336 10 C 0.030 3.970 11 C -0.204 4.204 12 C 0.267 3.733 13 F -0.183 7.183 14 F -0.188 7.188 15 C -0.162 4.162 16 H 0.135 0.865 17 C 0.010 3.990 18 N -0.356 5.356 19 C 0.393 3.607 20 O -0.426 6.426 21 C -0.135 4.135 22 C -0.122 4.122 23 C -0.192 4.192 24 C -0.037 4.037 25 Cl 0.076 6.924 26 O -0.066 6.066 27 C 0.030 3.970 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.031 0.969 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.252 0.748 36 H 0.203 0.797 37 H 0.219 0.781 38 H 0.038 0.962 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.361 -12.618 -2.167 19.240 hybrid contribution -0.037 -1.176 -0.318 1.219 sum 14.324 -13.795 -2.485 20.041 Atomic orbital electron populations 1.70921 1.07698 1.29578 1.50036 1.27158 0.96473 1.04806 0.98144 0.82877 0.73847 0.72112 0.77406 1.22232 1.20218 1.20262 1.20227 0.97464 0.88986 1.42019 0.92046 1.44382 1.45865 1.01979 1.41394 1.20793 0.90279 0.98499 0.87431 1.22993 1.05321 0.91665 1.00400 1.20925 0.82382 0.88137 0.81880 1.92984 1.92505 1.74931 1.57919 1.92964 1.52546 1.89750 1.83557 1.22848 0.98669 0.96656 0.97994 0.86451 1.21248 0.88049 0.95388 0.94357 1.45798 1.30868 1.10462 1.48447 1.16574 0.81489 0.83856 0.78816 1.90891 1.57119 1.32283 1.62348 1.21915 0.98170 0.85918 1.07481 1.22275 0.94638 1.00277 0.95019 1.21932 1.01105 0.91434 1.04760 1.23283 0.90640 0.92033 0.97739 1.98471 1.47282 1.66851 1.79761 1.83979 1.34289 1.36030 1.52258 1.21044 0.98490 0.84856 0.92644 0.93480 0.91560 0.96889 0.88098 0.88321 0.89841 0.91100 0.74781 0.79707 0.78130 0.96192 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.69 12.41 21.65 0.27 -54.42 16 2 C -0.07 -3.67 4.69 84.86 0.40 -3.27 16 3 Si 1.11 47.84 29.99 68.60 2.06 49.89 16 4 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.36 -18.36 9.49 84.03 0.80 -17.57 16 8 H 0.06 3.09 7.94 -2.91 -0.02 3.06 16 9 N -0.61 -28.12 2.84 -698.26 -1.99 -30.11 16 10 C 0.16 6.85 4.48 86.36 0.39 7.24 16 11 C -0.16 -5.60 5.62 30.67 0.17 -5.43 16 12 C 0.30 9.92 1.63 30.62 0.05 9.96 16 13 F -0.20 -6.26 16.41 44.97 0.74 -5.52 16 14 F -0.21 -7.45 15.72 44.97 0.71 -6.75 16 15 C -0.14 -4.31 2.04 -10.57 -0.02 -4.33 16 16 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 17 C 0.13 3.75 4.83 86.38 0.42 4.17 16 18 N -0.70 -18.18 5.33 -467.23 -2.49 -20.67 16 19 C 0.61 16.44 7.78 86.40 0.67 17.11 16 20 O -0.55 -17.65 16.86 -4.40 -0.07 -17.72 16 21 C -0.08 -1.91 7.13 24.05 0.17 -1.74 16 22 C -0.10 -1.82 10.62 22.38 0.24 -1.58 16 23 C -0.17 -2.47 10.84 22.10 0.24 -2.23 16 24 C 0.04 0.75 7.93 67.16 0.53 1.28 16 25 Cl 0.05 0.73 29.30 -2.72 -0.08 0.65 16 26 O -0.17 -3.77 10.40 -6.03 -0.06 -3.84 16 27 C 0.16 5.87 5.42 86.51 0.47 6.33 16 28 H 0.26 15.18 6.69 -92.71 -0.62 14.56 16 29 H 0.07 3.28 6.31 -2.39 -0.02 3.26 16 30 H 0.01 0.61 7.64 -2.39 -0.02 0.59 16 31 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.08 2.31 7.63 -2.39 -0.02 2.29 16 34 H 0.07 2.16 7.97 -2.39 -0.02 2.14 16 35 H 0.42 9.83 7.47 -92.71 -0.69 9.13 16 36 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.02 0.81 7.92 -2.38 -0.02 0.79 16 39 H 0.07 2.68 7.16 -2.38 -0.02 2.66 16 Total: -1.00 -63.84 350.35 4.17 -59.67 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.57 Total: 18.86 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 4.52 Total: 9.94 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -4.21 Total: -105.19 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.14 Total: -21.56 kcal Atomic # 9 Polarization: -13.71 SS G_CDS: 1.44 Total: -12.27 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.06 Total: 49.89 kcal Atomic # 17 Polarization: 0.73 SS G_CDS: -0.08 Total: 0.65 kcal Total: -63.84 4.17 -59.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046916367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.404 kcal (2) G-P(sol) polarization free energy of solvation -63.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds