Wall clock time and date at job start Wed Apr 1 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48492 * 109.47366 * 270.00180 * 3 2 1 5 5 H 1.48501 * 109.46672 * 30.00276 * 3 2 1 6 6 H 1.48498 * 109.46831 * 149.99911 * 3 2 1 7 7 C 1.38817 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00420 * 197.24614 * 7 2 1 9 9 N 1.36937 * 119.99384 * 16.96063 * 7 2 1 10 10 C 1.46918 * 120.63336 * 27.96728 * 9 7 2 11 11 C 1.53198 * 108.77782 * 126.36316 * 10 9 7 12 12 C 1.53045 * 109.30976 * 54.63690 * 11 10 9 13 13 F 1.39902 * 109.46172 * 58.65492 * 12 11 10 14 14 F 1.39900 * 109.46028 * 178.62943 * 12 11 10 15 15 C 1.53047 * 109.53832 * 298.63438 * 12 11 10 16 16 H 1.09004 * 109.49582 * 301.38710 * 15 12 11 17 17 C 1.52999 * 109.49735 * 181.31815 * 15 12 11 18 18 N 1.46500 * 109.46870 * 175.00017 * 17 15 12 19 19 C 1.34780 * 120.00006 * 179.97438 * 18 17 15 20 20 O 1.21715 * 119.99616 * 0.02562 * 19 18 17 21 21 C 1.46490 * 120.00016 * 179.97438 * 19 18 17 22 22 O 1.34988 * 126.00867 * 0.02740 * 21 19 18 23 23 C 1.33938 * 109.40390 * 180.02562 * 22 21 19 24 24 C 1.35078 * 108.82046 * 359.97438 * 23 22 21 25 25 C 1.36715 * 126.00793 * 179.71898 * 21 19 18 26 26 Cl 1.73596 * 126.66401 * 359.97438 * 25 21 19 27 27 C 1.46930 * 120.62860 * 207.68283 * 9 7 2 28 28 H 0.96990 * 119.99972 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.58724 * 246.15018 * 10 9 7 30 30 H 1.08998 * 109.58885 * 6.57967 * 10 9 7 31 31 H 1.08996 * 109.49945 * 174.58513 * 11 10 9 32 32 H 1.08994 * 109.49689 * 294.68744 * 11 10 9 33 33 H 1.08998 * 109.47055 * 295.00150 * 17 15 12 34 34 H 1.08999 * 109.46964 * 55.00411 * 17 15 12 35 35 H 0.97006 * 120.00135 * 359.97438 * 18 17 15 36 36 H 1.07998 * 125.59077 * 180.02562 * 23 22 21 37 37 H 1.08006 * 126.44024 * 180.02562 * 24 23 22 38 38 H 1.09003 * 109.58753 * 353.42210 * 27 9 7 39 39 H 1.08996 * 109.58961 * 113.84855 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0539 -1.2233 0.2767 9 7 1.3702 -2.3621 -0.3470 10 6 0.2242 -2.3389 -1.2660 11 6 0.4943 -3.3147 -2.4157 12 6 0.8119 -4.6975 -1.8419 13 9 -0.2641 -5.1376 -1.0636 14 9 1.0284 -5.5986 -2.8899 15 6 2.0692 -4.6147 -0.9732 16 1 2.9025 -4.2487 -1.5731 17 6 2.4047 -6.0038 -0.4266 18 7 3.6724 -5.9473 0.3055 19 6 4.1696 -7.0612 0.8788 20 8 3.5657 -8.1140 0.7878 21 6 5.4375 -7.0049 1.6105 22 8 6.2045 -5.9080 1.7858 23 6 7.2876 -6.2326 2.5038 24 6 7.2336 -7.5486 2.8033 25 6 6.0490 -8.0527 2.2407 26 17 5.4751 -9.6888 2.3260 27 6 1.8204 -3.6542 0.1884 28 1 -0.4849 0.8400 0.0004 29 1 -0.6773 -2.6421 -0.7336 30 1 0.0951 -1.3324 -1.6639 31 1 -0.3877 -3.3792 -3.0530 32 1 1.3422 -2.9606 -3.0019 33 1 1.6113 -6.3312 0.2453 34 1 2.4939 -6.7079 -1.2538 35 1 4.1539 -5.1083 0.3777 36 1 8.0746 -5.5533 2.7962 37 1 7.9619 -8.1075 3.3723 38 1 2.7443 -3.5151 0.7499 39 1 1.0518 -4.0668 0.8418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046969004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:51 Heat of formation + Delta-G solvation = -103.087365 kcal Electronic energy + Delta-G solvation = -28804.075054 eV Core-core repulsion = 24217.852854 eV Total energy + Delta-G solvation = -4586.222200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -48.55604 -46.50590 -43.08950 -39.59588 -37.43964 -36.86394 -35.13373 -33.25244 -32.74577 -31.23844 -30.35511 -29.90254 -26.01578 -25.21461 -23.47293 -22.43140 -22.18554 -21.41349 -20.63217 -19.63970 -18.86519 -17.21075 -16.85335 -16.79834 -16.70831 -16.33375 -15.54111 -15.38390 -15.33218 -14.79621 -14.49515 -14.08799 -14.06368 -13.71344 -13.56735 -13.37340 -13.28492 -13.14451 -12.89225 -12.81795 -12.54089 -12.24672 -11.73167 -11.66132 -11.59181 -11.27930 -11.22970 -10.87528 -10.66159 -10.54445 -10.29620 -10.09649 -10.02070 -9.95140 -9.70835 -9.27832 -8.92035 -8.64233 -6.93389 -5.96270 -3.41038 0.63445 1.71882 1.84949 2.43752 2.94426 2.99899 3.28238 3.35399 3.36978 4.14580 4.29527 4.33918 4.44120 4.57998 4.64082 4.80209 4.86324 5.13913 5.18723 5.24376 5.29462 5.37392 5.49184 5.59636 5.68649 5.85963 5.93847 6.11586 6.19862 6.24096 6.28325 6.35954 6.40210 6.65336 7.07909 7.31554 7.42613 7.62866 7.94035 8.23920 9.00291 9.62556 10.17666 11.12957 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011914 B = 0.003205 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.564244 B = 8733.653819 C =10643.801287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.263 4.263 8 H 0.070 0.930 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.179 4.179 12 C 0.301 3.699 13 F -0.198 7.198 14 F -0.213 7.213 15 C -0.156 4.156 16 H 0.103 0.897 17 C 0.125 3.875 18 N -0.708 5.708 19 C 0.597 3.403 20 O -0.504 6.504 21 C -0.057 4.057 22 O -0.148 6.148 23 C 0.010 3.990 24 C -0.216 4.216 25 C -0.053 4.053 26 Cl -0.006 7.006 27 C 0.152 3.848 28 H 0.257 0.743 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.409 0.591 36 H 0.219 0.781 37 H 0.166 0.834 38 H 0.066 0.934 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.711 -12.089 1.953 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.192 4.192 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.219 4.219 12 C 0.264 3.736 13 F -0.179 7.179 14 F -0.194 7.194 15 C -0.177 4.177 16 H 0.121 0.879 17 C 0.001 3.999 18 N -0.360 5.360 19 C 0.381 3.619 20 O -0.381 6.381 21 C -0.111 4.111 22 O -0.043 6.043 23 C -0.060 4.060 24 C -0.236 4.236 25 C -0.083 4.083 26 Cl 0.023 6.977 27 C 0.025 3.975 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.245 0.755 36 H 0.236 0.764 37 H 0.183 0.817 38 H 0.084 0.916 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.962 -12.555 1.779 17.432 hybrid contribution 0.710 0.841 0.126 1.108 sum 12.672 -11.714 1.905 17.362 Atomic orbital electron populations 1.70014 1.05327 1.25941 1.52915 1.25083 0.95312 0.98622 1.00211 0.86244 0.79099 0.83332 0.77785 1.21277 1.21649 1.20330 1.19173 0.92757 0.84427 1.42811 0.91244 1.44073 1.35473 1.01337 1.50274 1.20853 0.89343 0.98199 0.87229 1.23276 1.03389 0.92894 1.02316 1.21014 0.84822 0.87598 0.80146 1.92971 1.58251 1.91017 1.75707 1.92960 1.95181 1.71365 1.59886 1.22908 0.97275 0.96732 1.00817 0.87877 1.21426 0.85075 0.96848 0.96535 1.45828 1.24468 1.11515 1.54180 1.16386 0.81911 0.84637 0.78929 1.90946 1.58111 1.29247 1.59774 1.21935 0.96269 0.85000 1.07875 1.84214 1.29023 1.34075 1.56971 1.24392 0.89871 0.96480 0.95258 1.21673 0.99203 0.95265 1.07438 1.21278 0.96236 0.88693 1.02070 1.98392 1.88026 1.14369 1.96871 1.20839 0.98997 0.86375 0.91332 0.93295 0.94909 0.88086 0.90482 0.89554 0.90123 0.90485 0.75523 0.76421 0.81665 0.91603 0.94878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 11.18 55.49 0.62 -23.95 16 2 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 3 Si 0.91 20.31 29.59 -169.99 -5.03 15.28 16 4 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.26 -6.59 9.58 -15.06 -0.14 -6.74 16 8 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -13.48 3.00 -172.58 -0.52 -14.00 16 10 C 0.17 3.76 5.10 -3.71 -0.02 3.74 16 11 C -0.18 -3.21 5.62 -26.61 -0.15 -3.36 16 12 C 0.30 5.22 1.63 -26.68 -0.04 5.17 16 13 F -0.20 -3.74 15.73 2.25 0.04 -3.70 16 14 F -0.21 -3.60 16.40 2.25 0.04 -3.56 16 15 C -0.16 -2.49 2.02 -90.72 -0.18 -2.67 16 16 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 17 C 0.12 1.84 4.83 -4.04 -0.02 1.82 16 18 N -0.71 -9.49 5.33 -61.68 -0.33 -9.82 16 19 C 0.60 8.63 7.78 -12.94 -0.10 8.53 16 20 O -0.50 -8.61 15.54 5.18 0.08 -8.53 16 21 C -0.06 -0.72 7.13 -36.81 -0.26 -0.98 16 22 O -0.15 -1.54 10.40 4.76 0.05 -1.49 16 23 C 0.01 0.07 12.07 29.61 0.36 0.43 16 24 C -0.22 -1.78 10.88 -39.86 -0.43 -2.22 16 25 C -0.05 -0.61 6.76 -39.28 -0.27 -0.88 16 26 Cl -0.01 -0.07 27.84 -51.86 -1.44 -1.51 16 27 C 0.15 2.87 5.38 -3.93 -0.02 2.84 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 30 H 0.10 2.48 6.04 -51.93 -0.31 2.17 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.28 7.97 -51.93 -0.41 0.86 16 34 H 0.08 1.15 7.63 -51.93 -0.40 0.75 16 35 H 0.41 4.89 7.45 -40.82 -0.30 4.58 16 36 H 0.22 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.17 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.07 1.16 7.13 -51.93 -0.37 0.79 16 39 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -30.02 348.82 -6.89 -36.91 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.28 Total: 3.30 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.37 Total: 5.80 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.23 Total: -47.76 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.13 Total: -10.02 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.07 Total: -7.26 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.44 Total: -1.51 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.02 -6.89 -36.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046969004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.176 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds