Wall clock time and date at job start Wed Apr 1 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48492 * 109.47366 * 270.00180 * 3 2 1 5 5 H 1.48501 * 109.46672 * 30.00276 * 3 2 1 6 6 H 1.48498 * 109.46831 * 149.99911 * 3 2 1 7 7 C 1.38817 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00420 * 197.24614 * 7 2 1 9 9 N 1.36937 * 119.99384 * 16.96063 * 7 2 1 10 10 C 1.46918 * 120.63336 * 27.96728 * 9 7 2 11 11 C 1.53198 * 108.77782 * 126.36316 * 10 9 7 12 12 C 1.53045 * 109.30976 * 54.63690 * 11 10 9 13 13 F 1.39902 * 109.46172 * 58.65492 * 12 11 10 14 14 F 1.39900 * 109.46028 * 178.62943 * 12 11 10 15 15 C 1.53047 * 109.53832 * 298.63438 * 12 11 10 16 16 H 1.09004 * 109.49582 * 301.38710 * 15 12 11 17 17 C 1.52999 * 109.49735 * 181.31815 * 15 12 11 18 18 N 1.46500 * 109.46870 * 175.00017 * 17 15 12 19 19 C 1.34780 * 120.00006 * 179.97438 * 18 17 15 20 20 O 1.21715 * 119.99616 * 0.02562 * 19 18 17 21 21 C 1.46490 * 120.00016 * 179.97438 * 19 18 17 22 22 O 1.34988 * 126.00867 * 0.02740 * 21 19 18 23 23 C 1.33938 * 109.40390 * 180.02562 * 22 21 19 24 24 C 1.35078 * 108.82046 * 359.97438 * 23 22 21 25 25 C 1.36715 * 126.00793 * 179.71898 * 21 19 18 26 26 Cl 1.73596 * 126.66401 * 359.97438 * 25 21 19 27 27 C 1.46930 * 120.62860 * 207.68283 * 9 7 2 28 28 H 0.96990 * 119.99972 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.58724 * 246.15018 * 10 9 7 30 30 H 1.08998 * 109.58885 * 6.57967 * 10 9 7 31 31 H 1.08996 * 109.49945 * 174.58513 * 11 10 9 32 32 H 1.08994 * 109.49689 * 294.68744 * 11 10 9 33 33 H 1.08998 * 109.47055 * 295.00150 * 17 15 12 34 34 H 1.08999 * 109.46964 * 55.00411 * 17 15 12 35 35 H 0.97006 * 120.00135 * 359.97438 * 18 17 15 36 36 H 1.07998 * 125.59077 * 180.02562 * 23 22 21 37 37 H 1.08006 * 126.44024 * 180.02562 * 24 23 22 38 38 H 1.09003 * 109.58753 * 353.42210 * 27 9 7 39 39 H 1.08996 * 109.58961 * 113.84855 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0539 -1.2233 0.2767 9 7 1.3702 -2.3621 -0.3470 10 6 0.2242 -2.3389 -1.2660 11 6 0.4943 -3.3147 -2.4157 12 6 0.8119 -4.6975 -1.8419 13 9 -0.2641 -5.1376 -1.0636 14 9 1.0284 -5.5986 -2.8899 15 6 2.0692 -4.6147 -0.9732 16 1 2.9025 -4.2487 -1.5731 17 6 2.4047 -6.0038 -0.4266 18 7 3.6724 -5.9473 0.3055 19 6 4.1696 -7.0612 0.8788 20 8 3.5657 -8.1140 0.7878 21 6 5.4375 -7.0049 1.6105 22 8 6.2045 -5.9080 1.7858 23 6 7.2876 -6.2326 2.5038 24 6 7.2336 -7.5486 2.8033 25 6 6.0490 -8.0527 2.2407 26 17 5.4751 -9.6888 2.3260 27 6 1.8204 -3.6542 0.1884 28 1 -0.4849 0.8400 0.0004 29 1 -0.6773 -2.6421 -0.7336 30 1 0.0951 -1.3324 -1.6639 31 1 -0.3877 -3.3792 -3.0530 32 1 1.3422 -2.9606 -3.0019 33 1 1.6113 -6.3312 0.2453 34 1 2.4939 -6.7079 -1.2538 35 1 4.1539 -5.1083 0.3777 36 1 8.0746 -5.5533 2.7962 37 1 7.9619 -8.1075 3.3723 38 1 2.7443 -3.5151 0.7499 39 1 1.0518 -4.0668 0.8418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046969004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:51 Heat of formation + Delta-G solvation = -121.520508 kcal Electronic energy + Delta-G solvation = -28804.874375 eV Core-core repulsion = 24217.852854 eV Total energy + Delta-G solvation = -4587.021521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.99433 -47.94802 -43.83613 -40.72773 -38.97596 -37.76719 -36.49142 -34.46794 -33.92784 -32.60260 -32.02409 -30.90121 -27.40682 -26.93308 -24.59315 -23.90184 -23.06642 -22.72610 -21.64563 -21.12278 -19.84859 -18.85937 -18.30376 -17.81736 -17.64060 -17.43226 -17.01735 -16.90594 -16.61775 -16.29868 -15.55659 -15.52216 -15.30841 -14.90492 -14.79589 -14.65966 -14.49080 -14.30114 -14.25648 -13.98675 -13.80682 -13.44694 -13.27865 -13.20353 -13.06317 -13.02522 -12.61111 -12.26893 -12.19000 -12.17216 -11.90400 -11.65483 -11.46990 -11.18950 -10.75345 -10.57227 -10.38714 -9.75425 -8.80843 -7.90306 -5.37145 -0.22348 0.86765 1.20335 1.51781 1.53695 1.58056 1.61679 1.91026 2.05308 2.50101 2.78603 3.14929 3.22102 3.26299 3.51030 3.53352 3.61306 3.67726 3.90437 4.05172 4.17396 4.23555 4.38107 4.47773 4.56084 4.63725 4.74427 4.76560 4.82783 4.88057 5.02955 5.12000 5.16176 5.30127 5.59315 5.60904 5.66877 6.27971 6.34344 6.88098 7.08981 7.76394 8.28944 9.17901 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011914 B = 0.003205 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.564244 B = 8733.653819 C =10643.801287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.968 3.032 4 H -0.285 1.285 5 H -0.301 1.301 6 H -0.264 1.264 7 C -0.265 4.265 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.169 4.169 12 C 0.300 3.700 13 F -0.209 7.209 14 F -0.206 7.206 15 C -0.139 4.139 16 H 0.120 0.880 17 C 0.136 3.864 18 N -0.702 5.702 19 C 0.596 3.404 20 O -0.540 6.540 21 C -0.091 4.091 22 O -0.154 6.154 23 C 0.038 3.962 24 C -0.225 4.225 25 C -0.058 4.058 26 Cl -0.019 7.019 27 C 0.154 3.846 28 H 0.251 0.749 29 H 0.004 0.996 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.417 0.583 36 H 0.269 0.731 37 H 0.193 0.807 38 H 0.080 0.920 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.755 -11.943 2.076 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.797 3.203 4 H -0.211 1.211 5 H -0.228 1.228 6 H -0.189 1.189 7 C -0.394 4.394 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.051 3.949 11 C -0.208 4.208 12 C 0.264 3.736 13 F -0.190 7.190 14 F -0.187 7.187 15 C -0.160 4.160 16 H 0.138 0.862 17 C 0.011 3.989 18 N -0.353 5.353 19 C 0.382 3.618 20 O -0.419 6.419 21 C -0.144 4.144 22 O -0.049 6.049 23 C -0.032 4.032 24 C -0.244 4.244 25 C -0.089 4.089 26 Cl 0.010 6.990 27 C 0.028 3.972 28 H 0.060 0.940 29 H 0.022 0.978 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.254 0.746 36 H 0.285 0.715 37 H 0.210 0.790 38 H 0.099 0.901 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 15.037 -12.422 1.898 19.596 hybrid contribution -0.162 0.765 0.162 0.799 sum 14.875 -11.656 2.060 19.010 Atomic orbital electron populations 1.70171 1.06819 1.26102 1.54931 1.25821 0.95934 1.01630 1.00793 0.85252 0.78175 0.79346 0.77553 1.21137 1.22823 1.18883 1.19573 0.93298 0.85202 1.41343 0.90206 1.44303 1.35374 1.02198 1.50885 1.20573 0.88406 0.97773 0.88146 1.23102 1.04767 0.92131 1.00814 1.21032 0.85001 0.87257 0.80338 1.92958 1.58932 1.91099 1.76042 1.92973 1.95116 1.71026 1.59557 1.22703 0.97152 0.96586 0.99582 0.86165 1.21201 0.85457 0.95819 0.96389 1.45703 1.23897 1.11840 1.53889 1.16627 0.82447 0.84132 0.78563 1.90916 1.59448 1.30359 1.61209 1.21480 0.96662 0.86179 1.10086 1.84212 1.29761 1.33330 1.57576 1.25452 0.88848 0.96859 0.92014 1.22046 0.98561 0.95947 1.07833 1.21675 0.97308 0.87941 1.01942 1.98384 1.88379 1.15395 1.96881 1.20881 0.98905 0.85182 0.92265 0.93971 0.97763 0.90716 0.88922 0.88172 0.91485 0.90275 0.74558 0.71547 0.79005 0.90148 0.96576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.30 11.18 21.65 0.24 -52.06 16 2 C -0.05 -2.38 4.92 84.86 0.42 -1.96 16 3 Si 0.97 41.58 29.59 68.60 2.03 43.61 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.26 -13.11 9.58 84.03 0.81 -12.30 16 8 H 0.08 3.72 7.89 -2.91 -0.02 3.70 16 9 N -0.61 -27.55 3.00 -699.92 -2.10 -29.65 16 10 C 0.18 7.96 5.10 86.37 0.44 8.40 16 11 C -0.17 -5.89 5.62 30.68 0.17 -5.72 16 12 C 0.30 10.09 1.63 30.63 0.05 10.14 16 13 F -0.21 -7.86 15.73 44.97 0.71 -7.16 16 14 F -0.21 -6.57 16.40 44.97 0.74 -5.84 16 15 C -0.14 -4.26 2.02 -10.86 -0.02 -4.28 16 16 H 0.12 3.34 8.14 -2.38 -0.02 3.32 16 17 C 0.14 3.89 4.83 86.38 0.42 4.31 16 18 N -0.70 -18.12 5.33 -467.26 -2.49 -20.60 16 19 C 0.60 17.03 7.78 86.39 0.67 17.70 16 20 O -0.54 -18.67 15.54 -4.40 -0.07 -18.74 16 21 C -0.09 -2.17 7.13 24.06 0.17 -1.99 16 22 O -0.15 -2.78 10.40 -5.87 -0.06 -2.84 16 23 C 0.04 0.38 12.07 67.09 0.81 1.19 16 24 C -0.22 -3.00 10.88 22.09 0.24 -2.76 16 25 C -0.06 -1.28 6.76 22.46 0.15 -1.13 16 26 Cl -0.02 -0.47 27.84 -2.72 -0.08 -0.54 16 27 C 0.15 5.71 5.38 86.22 0.46 6.17 16 28 H 0.25 13.71 8.31 -92.72 -0.77 12.94 16 29 H 0.00 0.21 7.92 -2.38 -0.02 0.19 16 30 H 0.07 3.77 6.04 -2.39 -0.01 3.75 16 31 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.07 2.13 7.97 -2.39 -0.02 2.11 16 34 H 0.08 2.28 7.63 -2.39 -0.02 2.27 16 35 H 0.42 9.28 7.45 -92.70 -0.69 8.59 16 36 H 0.27 -0.22 8.06 -2.91 -0.02 -0.24 16 37 H 0.19 1.42 8.06 -2.91 -0.02 1.39 16 38 H 0.08 2.72 7.13 -2.39 -0.02 2.70 16 39 H 0.02 0.66 7.92 -2.39 -0.02 0.64 16 Total: -1.00 -66.60 348.82 4.14 -62.46 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.42 Total: 13.59 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 4.79 Total: 17.77 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -4.35 Total: -102.31 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.13 Total: -21.58 kcal Atomic # 9 Polarization: -14.44 SS G_CDS: 1.45 Total: -12.99 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.54 kcal Total: -66.60 4.14 -62.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046969004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.058 kcal (2) G-P(sol) polarization free energy of solvation -66.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds