Wall clock time and date at job start Wed Apr 1 2020 05:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00209 * 2 1 4 4 H 1.48497 * 109.47017 * 270.00020 * 3 2 1 5 5 H 1.48506 * 109.47154 * 29.99734 * 3 2 1 6 6 H 1.48496 * 109.47300 * 149.99557 * 3 2 1 7 7 C 1.37878 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99898 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00303 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47264 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00066 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00075 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00047 * 180.02562 * 11 10 9 14 14 O 1.45192 * 109.47099 * 180.02562 * 13 11 10 15 15 C 1.34730 * 116.99996 * 180.02562 * 14 13 11 16 16 O 1.21458 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.47775 * 119.99765 * 180.02562 * 15 14 13 18 18 C 1.38866 * 121.36800 * 354.34310 * 17 15 14 19 19 C 1.39916 * 119.43436 * 179.97438 * 18 17 15 20 20 O 1.35609 * 118.80118 * 180.02562 * 19 18 17 21 21 N 1.31238 * 122.40026 * 359.96435 * 19 18 17 22 22 C 1.33570 * 122.36616 * 0.08417 * 21 19 18 23 23 C 1.40664 * 121.07743 * 179.91439 * 22 21 19 24 24 C 1.36073 * 119.75832 * 179.97438 * 23 22 21 25 25 C 1.39536 * 121.05566 * 359.97438 * 24 23 22 26 26 F 1.35102 * 119.62507 * 180.02562 * 25 24 23 27 27 C 1.36554 * 120.74862 * 0.02562 * 25 24 23 28 28 C 1.39881 * 119.57000 * 359.97438 * 27 25 24 29 29 H 0.97001 * 119.99745 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.46849 * 59.99947 * 9 7 2 31 31 H 1.08997 * 109.47266 * 299.99855 * 9 7 2 32 32 H 0.97001 * 119.99590 * 0.02562 * 10 9 7 33 33 H 1.09003 * 109.47151 * 59.99707 * 13 11 10 34 34 H 1.09005 * 109.46884 * 300.00083 * 13 11 10 35 35 H 1.08000 * 120.28350 * 0.02562 * 18 17 15 36 36 H 0.96698 * 114.00124 * 90.00176 * 20 19 18 37 37 H 1.08002 * 120.12223 * 359.95683 * 23 22 21 38 38 H 1.07995 * 119.47404 * 180.02562 * 24 23 22 39 39 H 1.07993 * 120.21627 * 179.69976 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7329 -6.0289 0.0016 14 8 2.0069 -7.2863 0.0015 15 6 2.7406 -8.4162 0.0025 16 8 3.9536 -8.3527 0.0030 17 6 2.0697 -9.7329 0.0019 18 6 0.6900 -9.8411 0.1172 19 6 0.0969 -11.1083 0.1114 20 8 -1.2514 -11.1991 0.2242 21 7 0.7977 -12.2123 -0.0003 22 6 2.1285 -12.2059 -0.1150 23 6 2.8530 -13.4060 -0.2314 24 6 4.2082 -13.3682 -0.3474 25 6 4.8966 -12.1545 -0.3535 26 9 6.2425 -12.1506 -0.4707 27 6 4.2253 -10.9705 -0.2424 28 6 2.8317 -10.9759 -0.1217 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 3.1566 -3.4355 0.0009 33 1 3.3595 -5.9708 0.8916 34 1 3.3597 -5.9715 -0.8884 35 1 0.0800 -8.9547 0.2096 36 1 -1.7187 -11.1858 -0.6222 37 1 2.3355 -14.3540 -0.2285 38 1 4.7599 -14.2923 -0.4369 39 1 4.7671 -10.0364 -0.2433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116106495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:40 Heat of formation + Delta-G solvation = -139.091177 kcal Electronic energy + Delta-G solvation = -28480.029336 eV Core-core repulsion = 23882.305954 eV Total energy + Delta-G solvation = -4597.723382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.33274 -41.59772 -40.48701 -38.87943 -38.66913 -36.68682 -36.12094 -34.34193 -34.00329 -32.48013 -31.06407 -29.90355 -29.32355 -26.95150 -25.59164 -24.08663 -23.64711 -22.63799 -21.55565 -20.06956 -19.78321 -18.79019 -18.31518 -17.91111 -17.49262 -17.02405 -16.86912 -16.37821 -16.09667 -16.03193 -15.67718 -15.50830 -15.19500 -14.86199 -14.77159 -14.34519 -14.10178 -14.05698 -13.68781 -13.24843 -13.18256 -13.07163 -12.65468 -12.26366 -12.05989 -11.96897 -11.88775 -11.66393 -11.10272 -11.06022 -11.04588 -11.00266 -10.89910 -10.39398 -10.00968 -9.49937 -9.33205 -9.30347 -8.84072 -8.72247 -8.07602 -6.24567 -4.32272 -0.63451 0.09406 0.95525 1.92131 1.95938 2.34546 2.95221 3.05324 3.19849 3.26312 3.28428 3.38889 3.60141 3.68661 3.82227 4.03691 4.18183 4.27629 4.31033 4.52782 4.58903 4.83721 4.89186 4.93811 5.06099 5.07037 5.12201 5.21213 5.39818 5.45355 5.55879 5.56767 5.70381 6.03809 6.25614 6.95209 7.13821 7.19101 7.26625 7.29651 7.38780 7.54729 7.86118 8.40575 8.63365 8.86897 9.34285 10.85470 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.001977 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.352555 B =14157.335720 C =15723.941316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.704 5.704 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.049 3.951 14 O -0.318 6.318 15 C 0.515 3.485 16 O -0.491 6.491 17 C -0.054 4.054 18 C -0.098 4.098 19 C 0.341 3.659 20 O -0.475 6.475 21 N -0.468 5.468 22 C 0.133 3.867 23 C -0.058 4.058 24 C -0.131 4.131 25 C 0.111 3.889 26 F -0.132 7.132 27 C -0.139 4.139 28 C -0.047 4.047 29 H 0.267 0.733 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.394 0.606 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.172 0.828 36 H 0.409 0.591 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.492 -27.021 -1.892 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.282 3.718 12 O -0.411 6.411 13 C -0.028 4.028 14 O -0.232 6.232 15 C 0.359 3.641 16 O -0.381 6.381 17 C -0.063 4.063 18 C -0.120 4.120 19 C 0.146 3.854 20 O -0.283 6.283 21 N -0.188 5.188 22 C 0.012 3.988 23 C -0.077 4.077 24 C -0.151 4.151 25 C 0.092 3.908 26 F -0.110 7.110 27 C -0.158 4.158 28 C -0.049 4.049 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.227 0.773 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.189 0.811 36 H 0.268 0.732 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.574 -27.793 -1.308 28.376 hybrid contribution 1.434 1.900 -0.453 2.423 sum 7.007 -25.893 -1.761 26.882 Atomic orbital electron populations 1.69971 1.06118 1.27476 1.48550 1.24956 0.94951 0.99528 0.94561 0.86380 0.79602 0.82462 0.78272 1.20409 1.20956 1.19709 1.21195 0.93337 0.90260 1.53681 0.91743 1.19197 0.88127 0.81469 0.98089 1.46374 1.11627 1.05273 1.72188 1.19810 0.89043 0.83957 0.78944 1.90715 1.16225 1.84509 1.49651 1.23006 0.94549 0.80189 1.05089 1.86590 1.39767 1.13853 1.83031 1.20717 0.85420 0.84653 0.73333 1.90719 1.14496 1.87353 1.45485 1.20208 0.92941 0.89738 1.03396 1.22877 0.94349 0.99832 0.94896 1.19052 0.85385 0.86897 0.94090 1.84798 1.12640 1.95461 1.35381 1.66966 1.07717 1.32171 1.11984 1.18374 0.87831 0.92274 1.00291 1.20674 0.92483 0.97188 0.97315 1.20992 0.94746 0.97604 1.01746 1.17502 0.77548 0.94190 1.01608 1.91547 1.29011 1.97378 1.93058 1.21663 0.93459 1.00036 1.00655 1.19171 0.93565 0.91587 1.00574 0.92326 0.95198 0.95171 0.77342 0.87998 0.88014 0.81101 0.73215 0.83009 0.83490 0.80728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 13.29 55.43 0.74 -24.58 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.30 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.55 -14.25 9.28 -34.44 -0.32 -14.57 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.34 5.43 -5.19 -0.03 6.31 16 10 N -0.70 -13.77 5.55 -61.47 -0.34 -14.11 16 11 C 0.50 9.31 7.91 -10.99 -0.09 9.22 16 12 O -0.53 -12.20 16.50 -14.10 -0.23 -12.43 16 13 C 0.05 0.67 5.95 36.01 0.21 0.88 16 14 O -0.32 -4.48 9.14 -47.25 -0.43 -4.91 16 15 C 0.51 6.49 7.90 34.63 0.27 6.77 16 16 O -0.49 -6.57 13.50 -19.23 -0.26 -6.83 16 17 C -0.05 -0.60 6.08 -102.52 -0.62 -1.22 16 18 C -0.10 -0.98 9.62 -38.72 -0.37 -1.35 16 19 C 0.34 3.29 7.69 -17.18 -0.13 3.16 16 20 O -0.48 -3.81 13.53 -18.52 -0.25 -4.06 16 21 N -0.47 -4.85 10.28 -11.13 -0.11 -4.97 16 22 C 0.13 1.31 6.62 -84.88 -0.56 0.75 16 23 C -0.06 -0.42 9.99 -39.44 -0.39 -0.82 16 24 C -0.13 -0.89 9.92 -39.88 -0.40 -1.29 16 25 C 0.11 1.01 7.25 -39.71 -0.29 0.72 16 26 F -0.13 -1.28 17.25 2.25 0.04 -1.24 16 27 C -0.14 -1.45 9.27 -39.57 -0.37 -1.82 16 28 C -0.05 -0.50 5.90 -104.72 -0.62 -1.12 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.39 6.40 8.32 -40.82 -0.34 6.06 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.17 1.62 7.72 -52.49 -0.41 1.21 16 36 H 0.41 1.17 9.06 45.56 0.41 1.58 16 37 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.18 2.00 5.16 -52.49 -0.27 1.73 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -34.06 358.99 -6.93 -41.00 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -2.67 Total: 4.19 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -3.79 Total: 7.26 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.28 Total: -43.66 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -1.18 Total: -28.23 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.06 -6.93 -41.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116106495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.094 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds