Wall clock time and date at job start Wed Apr 1 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00209 * 2 1 4 4 H 1.48497 * 109.47017 * 270.00020 * 3 2 1 5 5 H 1.48506 * 109.47154 * 29.99734 * 3 2 1 6 6 H 1.48496 * 109.47300 * 149.99557 * 3 2 1 7 7 C 1.37878 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99898 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00303 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47264 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00066 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00075 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00047 * 180.02562 * 11 10 9 14 14 O 1.45192 * 109.47099 * 180.02562 * 13 11 10 15 15 C 1.34730 * 116.99996 * 180.02562 * 14 13 11 16 16 O 1.21458 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.47775 * 119.99765 * 180.02562 * 15 14 13 18 18 C 1.38866 * 121.36800 * 354.34310 * 17 15 14 19 19 C 1.39916 * 119.43436 * 179.97438 * 18 17 15 20 20 O 1.35609 * 118.80118 * 180.02562 * 19 18 17 21 21 N 1.31238 * 122.40026 * 359.96435 * 19 18 17 22 22 C 1.33570 * 122.36616 * 0.08417 * 21 19 18 23 23 C 1.40664 * 121.07743 * 179.91439 * 22 21 19 24 24 C 1.36073 * 119.75832 * 179.97438 * 23 22 21 25 25 C 1.39536 * 121.05566 * 359.97438 * 24 23 22 26 26 F 1.35102 * 119.62507 * 180.02562 * 25 24 23 27 27 C 1.36554 * 120.74862 * 0.02562 * 25 24 23 28 28 C 1.39881 * 119.57000 * 359.97438 * 27 25 24 29 29 H 0.97001 * 119.99745 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.46849 * 59.99947 * 9 7 2 31 31 H 1.08997 * 109.47266 * 299.99855 * 9 7 2 32 32 H 0.97001 * 119.99590 * 0.02562 * 10 9 7 33 33 H 1.09003 * 109.47151 * 59.99707 * 13 11 10 34 34 H 1.09005 * 109.46884 * 300.00083 * 13 11 10 35 35 H 1.08000 * 120.28350 * 0.02562 * 18 17 15 36 36 H 0.96698 * 114.00124 * 90.00176 * 20 19 18 37 37 H 1.08002 * 120.12223 * 359.95683 * 23 22 21 38 38 H 1.07995 * 119.47404 * 180.02562 * 24 23 22 39 39 H 1.07993 * 120.21627 * 179.69976 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7329 -6.0289 0.0016 14 8 2.0069 -7.2863 0.0015 15 6 2.7406 -8.4162 0.0025 16 8 3.9536 -8.3527 0.0030 17 6 2.0697 -9.7329 0.0019 18 6 0.6900 -9.8411 0.1172 19 6 0.0969 -11.1083 0.1114 20 8 -1.2514 -11.1991 0.2242 21 7 0.7977 -12.2123 -0.0003 22 6 2.1285 -12.2059 -0.1150 23 6 2.8530 -13.4060 -0.2314 24 6 4.2082 -13.3682 -0.3474 25 6 4.8966 -12.1545 -0.3535 26 9 6.2425 -12.1506 -0.4707 27 6 4.2253 -10.9705 -0.2424 28 6 2.8317 -10.9759 -0.1217 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 3.1566 -3.4355 0.0009 33 1 3.3595 -5.9708 0.8916 34 1 3.3597 -5.9715 -0.8884 35 1 0.0800 -8.9547 0.2096 36 1 -1.7187 -11.1858 -0.6222 37 1 2.3355 -14.3540 -0.2285 38 1 4.7599 -14.2923 -0.4369 39 1 4.7671 -10.0364 -0.2433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116106495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:39 Heat of formation + Delta-G solvation = -165.202991 kcal Electronic energy + Delta-G solvation = -28481.161629 eV Core-core repulsion = 23882.305954 eV Total energy + Delta-G solvation = -4598.855675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.06684 -42.41962 -41.47285 -40.36945 -39.37443 -37.77543 -36.79155 -36.19368 -34.78234 -34.42028 -31.79742 -30.84525 -30.51261 -28.64190 -26.53015 -24.92298 -24.58660 -24.20797 -22.45690 -21.68103 -20.55984 -19.54357 -19.35565 -18.87902 -18.71884 -18.03659 -17.88875 -17.58211 -17.13625 -16.92862 -16.81410 -16.69844 -16.38528 -16.20873 -16.01374 -15.50230 -14.92568 -14.80623 -14.62380 -14.48465 -14.33693 -14.15150 -13.95040 -13.73713 -13.68502 -12.94600 -12.91925 -12.72516 -12.66170 -12.34021 -12.23624 -12.05203 -11.98292 -11.83637 -11.50214 -10.96962 -10.82045 -10.76085 -10.00749 -9.93811 -9.43482 -8.29989 -6.46236 -1.40271 -0.60604 0.21700 0.91395 1.12914 1.44580 1.45915 1.52683 1.56709 1.57316 2.25054 2.32117 2.47968 2.67268 2.88451 3.05474 3.10725 3.25535 3.33774 3.58324 3.66565 3.82955 3.94608 4.01542 4.01895 4.12528 4.20745 4.29821 4.72447 4.81956 4.86554 4.93309 4.96439 5.08018 5.20059 5.22107 5.40977 5.56849 5.61975 5.81994 6.27108 6.38191 6.62625 6.65389 6.76032 7.19872 7.34531 8.81923 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.001977 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.352555 B =14157.335720 C =15723.941316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.698 5.698 11 C 0.500 3.500 12 O -0.581 6.581 13 C 0.060 3.940 14 O -0.334 6.334 15 C 0.520 3.480 16 O -0.500 6.500 17 C -0.069 4.069 18 C -0.093 4.093 19 C 0.341 3.659 20 O -0.482 6.482 21 N -0.474 5.474 22 C 0.121 3.879 23 C -0.050 4.050 24 C -0.118 4.118 25 C 0.112 3.888 26 F -0.136 7.136 27 C -0.159 4.159 28 C -0.055 4.055 29 H 0.269 0.731 30 H -0.006 1.006 31 H -0.007 1.007 32 H 0.413 0.587 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.171 0.829 36 H 0.429 0.571 37 H 0.180 0.820 38 H 0.182 0.818 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 -28.555 -2.034 29.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.461 6.461 13 C -0.016 4.016 14 O -0.249 6.249 15 C 0.364 3.636 16 O -0.390 6.390 17 C -0.078 4.078 18 C -0.114 4.114 19 C 0.146 3.854 20 O -0.293 6.293 21 N -0.194 5.194 22 C 0.000 4.000 23 C -0.068 4.068 24 C -0.138 4.138 25 C 0.093 3.907 26 F -0.115 7.115 27 C -0.178 4.178 28 C -0.058 4.058 29 H 0.078 0.922 30 H 0.012 0.988 31 H 0.011 0.989 32 H 0.249 0.751 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.189 0.811 36 H 0.292 0.708 37 H 0.197 0.803 38 H 0.199 0.801 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.669 -29.355 -1.464 30.375 hybrid contribution 0.754 2.246 -0.421 2.406 sum 8.422 -27.109 -1.885 28.449 Atomic orbital electron populations 1.70128 1.08183 1.28595 1.49850 1.26037 0.95779 1.03827 0.93913 0.85168 0.78493 0.77081 0.78551 1.19667 1.21114 1.17960 1.21611 0.94432 0.90415 1.52970 0.89598 1.18630 0.88546 0.83712 0.94678 1.46034 1.11783 1.04696 1.72445 1.20607 0.89262 0.84646 0.76911 1.90693 1.18780 1.85254 1.51419 1.22882 0.92659 0.78263 1.07812 1.86574 1.40548 1.14296 1.83467 1.20891 0.85299 0.84547 0.72816 1.90718 1.14786 1.87415 1.46060 1.20192 0.93436 0.89236 1.04915 1.22895 0.93969 1.00171 0.94390 1.19059 0.85946 0.86621 0.93824 1.84757 1.11930 1.95335 1.37239 1.67035 1.07989 1.32251 1.12167 1.18735 0.87857 0.92887 1.00517 1.21006 0.92600 0.97262 0.95936 1.21290 0.94598 0.97859 1.00072 1.17707 0.77337 0.94720 1.00952 1.91537 1.29455 1.97432 1.93030 1.21540 0.93497 1.00197 1.02542 1.19231 0.93681 0.91714 1.01154 0.92226 0.98849 0.98877 0.75062 0.85220 0.85123 0.81121 0.70773 0.80314 0.80063 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.66 13.29 21.45 0.28 -54.38 16 2 C 0.00 0.23 5.46 84.65 0.46 0.70 16 3 Si 0.98 41.26 29.54 68.60 2.03 43.29 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.56 -29.10 9.28 25.60 0.24 -28.86 16 8 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16 9 C 0.27 13.98 5.43 85.63 0.46 14.44 16 10 N -0.70 -27.43 5.55 -466.78 -2.59 -30.02 16 11 C 0.50 18.79 7.91 87.66 0.69 19.49 16 12 O -0.58 -27.60 16.50 15.77 0.26 -27.34 16 13 C 0.06 1.57 5.95 71.24 0.42 1.99 16 14 O -0.33 -9.32 9.14 -50.01 -0.46 -9.78 16 15 C 0.52 13.01 7.90 70.34 0.56 13.57 16 16 O -0.50 -13.14 13.50 19.97 0.27 -12.87 16 17 C -0.07 -1.54 6.08 -18.50 -0.11 -1.65 16 18 C -0.09 -1.85 9.62 22.83 0.22 -1.63 16 19 C 0.34 6.35 7.69 85.19 0.65 7.01 16 20 O -0.48 -7.27 13.53 -89.20 -1.21 -8.48 16 21 N -0.47 -9.21 10.28 -302.54 -3.11 -12.32 16 22 C 0.12 2.21 6.62 40.32 0.27 2.48 16 23 C -0.05 -0.59 9.99 22.36 0.22 -0.37 16 24 C -0.12 -1.26 9.92 22.08 0.22 -1.04 16 25 C 0.11 1.86 7.25 22.19 0.16 2.03 16 26 F -0.14 -2.46 17.25 44.97 0.78 -1.69 16 27 C -0.16 -3.25 9.27 22.27 0.21 -3.04 16 28 C -0.06 -1.16 5.90 -19.93 -0.12 -1.28 16 29 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 30 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 31 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.41 12.90 8.32 -92.71 -0.77 12.13 16 33 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.13 2.70 8.14 -2.38 -0.02 2.68 16 35 H 0.17 3.33 7.72 -2.91 -0.02 3.31 16 36 H 0.43 2.00 9.06 -74.06 -0.67 1.33 16 37 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 39 H 0.16 3.72 5.16 -2.91 -0.02 3.70 16 Total: -1.00 -76.30 358.99 0.53 -75.76 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -0.28 Total: 14.00 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 4.56 Total: 23.83 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -5.41 Total: -96.72 kcal Atomic # 8 Polarization: -57.34 SS G_CDS: -1.13 Total: -58.47 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -76.30 0.53 -75.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116106495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.439 kcal (2) G-P(sol) polarization free energy of solvation -76.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds