Wall clock time and date at job start Wed Apr 1 2020 04:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38337 * 119.32759 * 2 1 4 4 S 1.70832 * 130.48544 * 0.31739 * 3 2 1 5 5 C 1.75459 * 92.11335 * 180.02562 * 4 3 2 6 6 C 1.46353 * 124.92234 * 179.91070 * 5 4 3 7 7 O 1.21766 * 119.99939 * 187.12998 * 6 5 4 8 8 N 1.34778 * 120.00022 * 7.12268 * 6 5 4 9 9 C 1.36895 * 119.99728 * 178.16413 * 8 6 5 10 10 H 1.07995 * 119.99817 * 336.81251 * 9 8 6 11 11 C 1.38992 * 119.99252 * 156.53646 * 9 8 6 12 12 N 1.31400 * 120.00583 * 356.52432 * 11 9 8 13 13 Si 1.86807 * 119.99466 * 176.52966 * 11 9 8 14 14 H 1.48491 * 109.47438 * 89.99770 * 13 11 9 15 15 H 1.48501 * 109.46775 * 209.99657 * 13 11 9 16 16 H 1.48506 * 109.46938 * 329.99397 * 13 11 9 17 17 C 1.46497 * 120.00215 * 358.16743 * 8 6 5 18 18 C 1.47201 * 109.47269 * 278.37447 * 17 8 6 19 19 N 5.49094 * 76.09842 * 336.82383 * 2 1 3 20 20 C 1.34469 * 110.15243 * 359.63762 * 5 4 3 21 21 C 1.39007 * 119.08566 * 179.97438 * 3 2 1 22 22 C 1.48035 * 117.51116 * 0.02562 * 21 3 2 23 23 O 1.21682 * 120.51394 * 179.97438 * 22 21 3 24 24 N 1.34593 * 118.96434 * 359.97438 * 22 21 3 25 25 C 1.46499 * 119.51891 * 179.97438 * 24 22 21 26 26 C 1.34063 * 119.33189 * 180.02562 * 2 1 3 27 27 O 1.21580 * 118.92863 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47183 * 89.99927 * 1 2 3 29 29 H 1.09003 * 109.46911 * 209.99625 * 1 2 3 30 30 H 1.08998 * 109.47559 * 329.99558 * 1 2 3 31 31 H 0.97009 * 120.00257 * 180.02562 * 12 11 9 32 32 H 1.09003 * 109.46958 * 38.37643 * 17 8 6 33 33 H 1.08997 * 109.47137 * 158.37221 * 17 8 6 34 34 H 1.07998 * 122.85493 * 180.24398 * 20 5 4 35 35 H 1.09000 * 109.47568 * 270.04665 * 25 24 22 36 36 H 1.09004 * 109.46880 * 30.04967 * 25 24 22 37 37 H 1.09000 * 109.47075 * 150.04388 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1426 1.2061 0.0000 4 16 1.5531 2.8094 0.0072 5 6 3.1764 3.4752 0.0004 6 6 3.4962 4.9034 0.0005 7 8 4.6497 5.2690 -0.1354 8 7 2.5139 5.8139 0.1508 9 6 2.8175 7.1483 0.1886 10 1 3.8091 7.4686 0.4723 11 6 1.8511 8.0904 -0.1437 12 7 0.6677 7.6992 -0.5596 13 14 2.2349 9.9129 0.0010 14 1 2.7985 10.4035 -1.2822 15 1 0.9884 10.6580 0.3112 16 1 3.2227 10.1258 1.0892 17 6 1.1215 5.3757 0.2738 18 6 0.5714 5.1074 -1.0649 19 7 0.1458 4.9000 -2.0977 20 6 4.0841 2.4831 0.0011 21 6 3.5326 1.2002 0.0005 22 6 4.2109 -0.1156 0.0005 23 8 5.4258 -0.1845 0.0005 24 7 3.4628 -1.2345 0.0005 25 6 4.1214 -2.5431 -0.0001 26 6 2.1217 -1.1688 -0.0005 27 8 1.4821 -2.2027 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 -0.0067 8.3567 -0.7919 32 1 1.0784 4.4664 0.8733 33 1 0.5359 6.1577 0.7572 34 1 5.1489 2.6632 0.0013 35 1 4.2851 -2.8671 -1.0279 36 1 5.0795 -2.4679 0.5142 37 1 3.4896 -3.2681 0.5131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136559867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:41 Heat of formation + Delta-G solvation = 9.586382 kcal Electronic energy + Delta-G solvation = -28112.188224 eV Core-core repulsion = 23983.584817 eV Total energy + Delta-G solvation = -4128.603407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.27506 -39.36716 -39.05069 -37.93252 -36.22257 -35.42559 -35.32090 -34.60833 -32.19413 -30.07502 -28.54202 -27.77184 -27.12749 -25.70373 -24.50657 -23.65023 -21.79769 -20.68479 -18.71812 -18.21815 -18.16168 -17.46440 -17.35928 -16.93269 -16.76354 -16.00023 -15.55237 -15.15774 -15.06024 -14.83951 -14.38468 -14.21749 -13.94206 -13.75126 -13.62759 -13.28720 -13.12967 -12.88711 -12.72225 -12.57417 -12.26238 -12.18001 -11.90155 -11.59447 -11.43255 -11.29833 -11.06659 -10.83237 -10.70467 -10.54838 -10.49670 -10.20849 -9.96389 -9.52243 -9.06440 -8.62768 -8.33905 -8.06557 -6.74551 -4.31766 0.41608 0.95649 1.46538 1.70357 1.89875 2.12972 2.71767 3.01280 3.08814 3.12570 3.26754 3.33913 3.59060 3.88407 3.90161 4.14952 4.46398 4.61005 4.70791 4.72818 4.76699 4.99686 5.05386 5.14562 5.22570 5.26927 5.33102 5.46066 5.47645 5.63321 5.76065 5.99991 6.21374 6.28797 6.33641 6.99683 7.19270 7.31098 7.60884 7.74023 7.98766 8.37402 8.68664 8.84337 9.38324 10.28475 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.003450 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.538020 B = 8114.602391 C = 9185.660793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.506 5.506 3 C 0.016 3.984 4 S 0.288 5.712 5 C -0.243 4.243 6 C 0.522 3.478 7 O -0.551 6.551 8 N -0.431 5.431 9 C -0.297 4.297 10 H 0.115 0.885 11 C 0.032 3.968 12 N -0.885 5.885 13 Si 0.942 3.058 14 H -0.275 1.275 15 H -0.280 1.280 16 H -0.265 1.265 17 C 0.210 3.790 18 C 0.232 3.768 19 N -0.446 5.446 20 C 0.000 4.000 21 C -0.231 4.231 22 C 0.579 3.421 23 O -0.499 6.499 24 N -0.557 5.557 25 C 0.082 3.918 26 C 0.706 3.294 27 O -0.546 6.546 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.280 0.720 32 H 0.077 0.923 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 -12.122 5.302 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.229 5.229 3 C -0.203 4.203 4 S 0.554 5.446 5 C -0.363 4.363 6 C 0.310 3.690 7 O -0.434 6.434 8 N -0.150 5.150 9 C -0.424 4.424 10 H 0.132 0.868 11 C -0.171 4.171 12 N -0.525 5.525 13 Si 0.767 3.233 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.190 1.190 17 C 0.080 3.920 18 C -0.087 4.087 19 N -0.126 5.126 20 C -0.031 4.031 21 C -0.249 4.249 22 C 0.371 3.629 23 O -0.372 6.372 24 N -0.301 5.301 25 C -0.059 4.059 26 C 0.408 3.592 27 O -0.420 6.420 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.183 0.817 34 H 0.182 0.818 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.289 -12.263 3.669 13.850 hybrid contribution 1.436 0.272 0.215 1.477 sum -3.853 -11.992 3.884 13.181 Atomic orbital electron populations 1.22145 0.74679 1.05203 1.04434 1.43789 1.08534 1.01741 1.68843 1.24758 0.96321 0.96177 1.03086 1.84295 1.06543 0.85821 1.67938 1.24115 0.94773 0.99204 1.18247 1.16664 0.86403 0.82297 0.83615 1.90739 1.19158 1.79262 1.54253 1.43479 1.02722 1.06759 1.62086 1.19874 1.00491 0.78589 1.43465 0.86770 1.25473 0.95178 1.01668 0.94826 1.69638 1.04835 1.35775 1.42228 0.85657 0.78164 0.80226 0.79238 1.20047 1.20518 1.18952 1.19174 0.86369 0.99563 0.86908 1.29013 0.93665 0.90572 0.95478 1.80957 1.08726 1.12176 1.10779 1.19612 1.01729 0.87168 0.94542 1.19477 0.90205 0.94281 1.20974 1.17997 0.86730 0.83003 0.75212 1.90835 1.12527 1.86713 1.47140 1.45894 1.05921 1.10307 1.67934 1.21912 0.98879 0.81117 1.03973 1.15416 0.81719 0.83611 0.78498 1.90987 1.65123 1.30745 1.55195 0.90231 0.88099 0.89493 0.90939 0.90662 0.81703 0.81835 0.90855 0.88824 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.17 59.85 0.61 1.31 16 2 N -0.51 -6.43 3.04 -128.22 -0.39 -6.82 16 3 C 0.02 0.23 6.95 -14.33 -0.10 0.13 16 4 S 0.29 4.06 15.03 -107.50 -1.62 2.45 16 5 C -0.24 -4.35 6.12 -37.65 -0.23 -4.58 16 6 C 0.52 11.41 7.49 -13.00 -0.10 11.31 16 7 O -0.55 -13.86 16.49 5.13 0.08 -13.78 16 8 N -0.43 -9.33 2.61 -119.54 -0.31 -9.64 16 9 C -0.30 -6.95 9.29 -15.01 -0.14 -7.09 16 10 H 0.11 2.78 7.41 -52.49 -0.39 2.39 16 11 C 0.03 0.71 5.24 -17.46 -0.09 0.62 16 12 N -0.89 -19.77 8.95 55.50 0.50 -19.28 16 13 Si 0.94 18.10 29.56 -169.99 -5.02 13.07 16 14 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 15 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 16 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 17 C 0.21 3.77 4.72 -6.83 -0.03 3.74 16 18 C 0.23 4.54 11.10 -20.75 -0.23 4.31 16 19 N -0.45 -9.36 18.54 42.16 0.78 -8.57 16 20 C 0.00 -0.01 9.82 -40.39 -0.40 -0.40 16 21 C -0.23 -3.67 6.06 -105.07 -0.64 -4.31 16 22 C 0.58 9.13 7.66 -12.32 -0.09 9.04 16 23 O -0.50 -8.79 16.64 5.20 0.09 -8.70 16 24 N -0.56 -7.64 2.94 -129.51 -0.38 -8.02 16 25 C 0.08 0.86 10.08 59.85 0.60 1.46 16 26 C 0.71 9.75 8.09 -88.01 -0.71 9.04 16 27 O -0.55 -8.00 15.13 5.29 0.08 -7.92 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 0.84 7.31 -51.93 -0.38 0.46 16 30 H 0.09 0.63 7.37 -51.93 -0.38 0.25 16 31 H 0.28 6.06 8.31 -40.82 -0.34 5.72 16 32 H 0.08 1.10 4.50 -21.89 -0.10 1.00 16 33 H 0.17 2.99 6.12 -51.93 -0.32 2.67 16 34 H 0.16 2.88 8.01 -52.49 -0.42 2.46 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.92 7.40 -51.93 -0.38 0.53 16 37 H 0.09 0.86 7.33 -51.93 -0.38 0.48 16 LS Contribution 333.09 15.07 5.02 5.02 Total: -1.00 -30.31 333.09 -5.45 -35.76 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -2.73 Total: 1.86 kcal Atomic # 6 Polarization: 26.11 SS G_CDS: -1.55 Total: 24.56 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.20 Total: -52.33 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: 0.25 Total: -30.40 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.07 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.62 Total: 2.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.31 -5.45 -35.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.351 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds