Wall clock time and date at job start Wed Apr 1 2020 04:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38337 * 119.32759 * 2 1 4 4 S 1.70832 * 130.48544 * 0.31739 * 3 2 1 5 5 C 1.75459 * 92.11335 * 180.02562 * 4 3 2 6 6 C 1.46353 * 124.92234 * 179.91070 * 5 4 3 7 7 O 1.21766 * 119.99939 * 187.12998 * 6 5 4 8 8 N 1.34778 * 120.00022 * 7.12268 * 6 5 4 9 9 C 1.36895 * 119.99728 * 178.16413 * 8 6 5 10 10 H 1.07995 * 119.99817 * 336.81251 * 9 8 6 11 11 C 1.38992 * 119.99252 * 156.53646 * 9 8 6 12 12 N 1.31400 * 120.00583 * 356.52432 * 11 9 8 13 13 Si 1.86807 * 119.99466 * 176.52966 * 11 9 8 14 14 H 1.48491 * 109.47438 * 89.99770 * 13 11 9 15 15 H 1.48501 * 109.46775 * 209.99657 * 13 11 9 16 16 H 1.48506 * 109.46938 * 329.99397 * 13 11 9 17 17 C 1.46497 * 120.00215 * 358.16743 * 8 6 5 18 18 C 1.47201 * 109.47269 * 278.37447 * 17 8 6 19 19 N 5.49094 * 76.09842 * 336.82383 * 2 1 3 20 20 C 1.34469 * 110.15243 * 359.63762 * 5 4 3 21 21 C 1.39007 * 119.08566 * 179.97438 * 3 2 1 22 22 C 1.48035 * 117.51116 * 0.02562 * 21 3 2 23 23 O 1.21682 * 120.51394 * 179.97438 * 22 21 3 24 24 N 1.34593 * 118.96434 * 359.97438 * 22 21 3 25 25 C 1.46499 * 119.51891 * 179.97438 * 24 22 21 26 26 C 1.34063 * 119.33189 * 180.02562 * 2 1 3 27 27 O 1.21580 * 118.92863 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47183 * 89.99927 * 1 2 3 29 29 H 1.09003 * 109.46911 * 209.99625 * 1 2 3 30 30 H 1.08998 * 109.47559 * 329.99558 * 1 2 3 31 31 H 0.97009 * 120.00257 * 180.02562 * 12 11 9 32 32 H 1.09003 * 109.46958 * 38.37643 * 17 8 6 33 33 H 1.08997 * 109.47137 * 158.37221 * 17 8 6 34 34 H 1.07998 * 122.85493 * 180.24398 * 20 5 4 35 35 H 1.09000 * 109.47568 * 270.04665 * 25 24 22 36 36 H 1.09004 * 109.46880 * 30.04967 * 25 24 22 37 37 H 1.09000 * 109.47075 * 150.04388 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1426 1.2061 0.0000 4 16 1.5531 2.8094 0.0072 5 6 3.1764 3.4752 0.0004 6 6 3.4962 4.9034 0.0005 7 8 4.6497 5.2690 -0.1354 8 7 2.5139 5.8139 0.1508 9 6 2.8175 7.1483 0.1886 10 1 3.8091 7.4686 0.4723 11 6 1.8511 8.0904 -0.1437 12 7 0.6677 7.6992 -0.5596 13 14 2.2349 9.9129 0.0010 14 1 2.7985 10.4035 -1.2822 15 1 0.9884 10.6580 0.3112 16 1 3.2227 10.1258 1.0892 17 6 1.1215 5.3757 0.2738 18 6 0.5714 5.1074 -1.0649 19 7 0.1458 4.9000 -2.0977 20 6 4.0841 2.4831 0.0011 21 6 3.5326 1.2002 0.0005 22 6 4.2109 -0.1156 0.0005 23 8 5.4258 -0.1845 0.0005 24 7 3.4628 -1.2345 0.0005 25 6 4.1214 -2.5431 -0.0001 26 6 2.1217 -1.1688 -0.0005 27 8 1.4821 -2.2027 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 -0.0067 8.3567 -0.7919 32 1 1.0784 4.4664 0.8733 33 1 0.5359 6.1577 0.7572 34 1 5.1489 2.6632 0.0013 35 1 4.2851 -2.8671 -1.0279 36 1 5.0795 -2.4679 0.5142 37 1 3.4896 -3.2681 0.5131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136559867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:41 Heat of formation + Delta-G solvation = -9.199952 kcal Electronic energy + Delta-G solvation = -28113.002860 eV Core-core repulsion = 23983.584817 eV Total energy + Delta-G solvation = -4129.418043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.40696 -40.91902 -40.32406 -39.15961 -37.78642 -36.70095 -36.52261 -36.25247 -33.89414 -31.24321 -29.83471 -29.13920 -28.12237 -27.20408 -25.75631 -24.89588 -23.12374 -21.95216 -20.18089 -19.81953 -19.36295 -18.81114 -18.50763 -18.34308 -18.05428 -17.24338 -16.78354 -16.59501 -16.25382 -16.08191 -15.82793 -15.71897 -15.37707 -15.10755 -15.01485 -14.81132 -14.05320 -13.96686 -13.81258 -13.77987 -13.53069 -13.41338 -13.33714 -13.21522 -12.97769 -12.63526 -12.51823 -12.42241 -12.05655 -11.92847 -11.74103 -11.50948 -11.21073 -11.04592 -10.81448 -10.10617 -9.80142 -9.32542 -8.44291 -6.09690 -0.84660 -0.29570 0.17519 0.39009 0.85889 0.88854 1.47047 1.50443 1.58504 1.61564 1.74624 1.95654 2.13360 2.30667 2.31268 2.81843 2.96303 3.08886 3.24168 3.46155 3.73825 3.86129 4.18441 4.20640 4.26027 4.32867 4.35022 4.37098 4.55774 4.65386 4.70725 4.75529 4.86208 4.89245 5.09716 5.41918 5.86840 5.93265 6.15069 6.28338 6.60416 6.79981 6.97083 7.14121 7.69183 8.56474 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.003450 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.538020 B = 8114.602391 C = 9185.660793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.502 5.502 3 C 0.044 3.956 4 S 0.353 5.647 5 C -0.279 4.279 6 C 0.517 3.483 7 O -0.598 6.598 8 N -0.441 5.441 9 C -0.328 4.328 10 H 0.092 0.908 11 C 0.010 3.990 12 N -0.894 5.894 13 Si 0.994 3.006 14 H -0.287 1.287 15 H -0.267 1.267 16 H -0.264 1.264 17 C 0.213 3.787 18 C 0.241 3.759 19 N -0.468 5.468 20 C 0.011 3.989 21 C -0.256 4.256 22 C 0.580 3.420 23 O -0.525 6.525 24 N -0.556 5.556 25 C 0.076 3.924 26 C 0.704 3.296 27 O -0.549 6.549 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.282 0.718 32 H 0.114 0.886 33 H 0.168 0.832 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 -13.469 5.721 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.224 5.224 3 C -0.178 4.178 4 S 0.619 5.381 5 C -0.399 4.399 6 C 0.307 3.693 7 O -0.485 6.485 8 N -0.160 5.160 9 C -0.455 4.455 10 H 0.110 0.890 11 C -0.192 4.192 12 N -0.533 5.533 13 Si 0.818 3.182 14 H -0.214 1.214 15 H -0.191 1.191 16 H -0.188 1.188 17 C 0.083 3.917 18 C -0.078 4.078 19 N -0.149 5.149 20 C -0.020 4.020 21 C -0.274 4.274 22 C 0.373 3.627 23 O -0.400 6.400 24 N -0.299 5.299 25 C -0.063 4.063 26 C 0.406 3.594 27 O -0.424 6.424 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.185 0.815 34 H 0.168 0.832 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.562 -13.651 4.098 16.135 hybrid contribution 2.073 0.501 0.064 2.133 sum -5.489 -13.151 4.162 14.846 Atomic orbital electron populations 1.22551 0.72234 1.06954 1.05887 1.44091 1.09958 1.00786 1.67608 1.24768 0.95794 0.96915 1.00331 1.83823 1.02699 0.84645 1.66948 1.23675 0.97767 0.97370 1.21127 1.17134 0.85853 0.83809 0.82481 1.90687 1.21040 1.80652 1.56079 1.43575 1.04043 1.06317 1.62039 1.19786 1.00232 0.79970 1.45553 0.88983 1.25995 0.94913 1.04226 0.94084 1.69698 1.04967 1.36586 1.42010 0.84888 0.78310 0.76625 0.78380 1.21389 1.19134 1.18838 1.19359 0.84362 1.01388 0.86591 1.29267 0.93064 0.89908 0.95572 1.80964 1.09544 1.13108 1.11259 1.19565 1.01254 0.87902 0.93231 1.19395 0.91115 0.93935 1.22917 1.17960 0.86472 0.83415 0.74893 1.90822 1.13530 1.87079 1.48574 1.45994 1.06039 1.10769 1.67106 1.22160 0.99179 0.79881 1.05103 1.15507 0.81645 0.83823 0.78422 1.90994 1.65139 1.30877 1.55384 0.88930 0.86949 0.87312 0.90718 0.87026 0.81516 0.83242 0.89638 0.88440 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 10.17 127.77 1.30 2.20 16 2 N -0.50 -11.14 3.04 -678.23 -2.06 -13.20 16 3 C 0.04 1.12 6.95 83.85 0.58 1.71 16 4 S 0.35 9.12 15.03 -56.49 -0.85 8.28 16 5 C -0.28 -9.97 6.12 23.52 0.14 -9.83 16 6 C 0.52 23.21 7.49 86.35 0.65 23.85 16 7 O -0.60 -31.60 16.49 -4.56 -0.08 -31.67 16 8 N -0.44 -19.30 2.61 -650.29 -1.70 -21.00 16 9 C -0.33 -15.73 9.29 84.08 0.78 -14.95 16 10 H 0.09 4.72 7.41 -2.91 -0.02 4.70 16 11 C 0.01 0.45 5.24 84.94 0.44 0.90 16 12 N -0.89 -39.21 8.95 21.67 0.19 -39.01 16 13 Si 0.99 36.99 29.56 68.60 2.03 39.01 16 14 H -0.29 -11.26 7.11 99.48 0.71 -10.56 16 15 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 16 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 17 C 0.21 7.38 4.72 84.57 0.40 7.78 16 18 C 0.24 9.08 11.10 89.44 0.99 10.07 16 19 N -0.47 -18.92 18.54 20.01 0.37 -18.55 16 20 C 0.01 0.40 9.82 21.75 0.21 0.61 16 21 C -0.26 -7.88 6.06 -20.16 -0.12 -8.00 16 22 C 0.58 17.76 7.66 86.87 0.67 18.42 16 23 O -0.52 -18.42 16.64 -4.29 -0.07 -18.49 16 24 N -0.56 -14.19 2.94 -800.52 -2.36 -16.54 16 25 C 0.08 1.44 10.08 127.77 1.29 2.73 16 26 C 0.70 17.50 8.09 179.44 1.45 18.95 16 27 O -0.55 -14.36 15.13 -3.97 -0.06 -14.42 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.11 1.42 7.31 -2.39 -0.02 1.40 16 30 H 0.11 1.08 7.37 -2.39 -0.02 1.06 16 31 H 0.28 11.88 8.31 -92.70 -0.77 11.11 16 32 H 0.11 2.98 4.50 -21.49 -0.10 2.88 16 33 H 0.17 5.83 6.12 -2.39 -0.01 5.82 16 34 H 0.15 5.54 8.01 -2.91 -0.02 5.52 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.78 7.40 -2.38 -0.02 1.76 16 37 H 0.11 1.72 7.33 -2.39 -0.02 1.70 16 Total: -1.00 -66.13 333.09 5.30 -60.84 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.09 Total: 10.32 kcal Atomic # 6 Polarization: 45.66 SS G_CDS: 8.79 Total: 54.45 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -5.55 Total: -108.31 kcal Atomic # 8 Polarization: -64.37 SS G_CDS: -0.21 Total: -64.58 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.01 kcal Atomic # 16 Polarization: 9.12 SS G_CDS: -0.85 Total: 8.28 kcal Total: -66.13 5.30 -60.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.636 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds