Wall clock time and date at job start Wed Apr 1 2020 05:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47002 * 29.91726 * 3 2 1 5 5 C 1.36909 * 119.99899 * 264.32219 * 4 3 2 6 6 H 1.08001 * 120.00285 * 143.09339 * 5 4 3 7 7 C 1.39017 * 119.99606 * 323.08598 * 5 4 3 8 8 N 1.31397 * 119.99332 * 159.87294 * 7 5 4 9 9 Si 1.86796 * 120.00379 * 339.87520 * 7 5 4 10 10 H 1.48498 * 109.47081 * 89.94729 * 9 7 5 11 11 H 1.48499 * 109.46960 * 209.94171 * 9 7 5 12 12 H 1.48499 * 109.47181 * 329.94277 * 9 7 5 13 13 C 1.34769 * 119.99627 * 84.31833 * 4 3 2 14 14 O 1.21643 * 120.00075 * 185.26369 * 13 4 3 15 15 C 1.47353 * 120.00669 * 5.26444 * 13 4 3 16 16 N 1.32084 * 126.45121 * 354.65580 * 15 13 4 17 17 N 1.28451 * 110.20070 * 180.02562 * 16 15 13 18 18 C 1.40169 * 124.92305 * 180.02562 * 17 16 15 19 19 C 1.38827 * 120.05431 * 359.97233 * 18 17 16 20 20 C 1.38097 * 119.97695 * 179.97438 * 19 18 17 21 21 C 1.38518 * 120.09064 * 359.97438 * 20 19 18 22 22 F 1.35108 * 119.94547 * 179.97438 * 21 20 19 23 23 C 1.38450 * 120.11104 * 359.97438 * 21 20 19 24 24 C 1.38304 * 120.01927 * 359.74520 * 23 21 20 25 25 F 1.35106 * 120.04723 * 180.27628 * 24 23 21 26 26 C 1.36101 * 110.14930 * 0.02562 * 17 16 15 27 27 C 1.35751 * 107.08174 * 0.23859 * 26 17 16 28 28 O 1.36078 * 127.26500 * 179.75941 * 27 26 17 29 29 H 1.08997 * 109.47106 * 269.92124 * 3 2 1 30 30 H 1.09002 * 109.47061 * 149.91566 * 3 2 1 31 31 H 0.97002 * 119.99530 * 180.02562 * 8 7 5 32 32 H 1.07996 * 120.01311 * 359.95497 * 19 18 17 33 33 H 1.08001 * 119.95321 * 180.02562 * 20 19 18 34 34 H 1.08010 * 119.99132 * 180.02562 * 23 21 20 35 35 H 1.08001 * 126.45834 * 179.97438 * 26 17 16 36 36 H 0.96697 * 114.00228 * 90.02428 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1963 -0.6889 5 6 3.4361 -2.3101 0.0313 6 1 3.2243 -3.2932 -0.3625 7 6 4.0535 -2.1756 1.2696 8 7 4.0263 -3.1696 2.1286 9 14 4.9215 -0.5820 1.7124 10 1 3.9597 0.3398 2.3685 11 1 6.0428 -0.8709 2.6421 12 1 5.4521 0.0520 0.4788 13 6 3.2125 -1.2010 -2.0316 14 8 3.5263 -2.2232 -2.6115 15 6 2.9589 0.0321 -2.7974 16 7 2.5185 1.1796 -2.3138 17 7 2.4091 2.0454 -3.2563 18 6 1.9689 3.3653 -3.0864 19 6 1.6113 3.8220 -1.8251 20 6 1.1783 5.1229 -1.6594 21 6 1.1007 5.9732 -2.7501 22 9 0.6762 7.2452 -2.5847 23 6 1.4574 5.5219 -4.0094 24 6 1.8972 4.2218 -4.1797 25 9 2.2507 3.7825 -5.4074 26 6 2.7826 1.4954 -4.4439 27 6 3.1353 0.2085 -4.1939 28 8 3.5696 -0.7163 -5.0927 29 1 2.9714 0.0022 1.0276 30 1 2.9710 0.8901 -0.5152 31 1 4.4568 -3.0757 2.9928 32 1 1.6714 3.1602 -0.9738 33 1 0.9006 5.4779 -0.6780 34 1 1.3965 6.1868 -4.8585 35 1 2.7921 1.9883 -5.4048 36 1 4.5290 -0.7281 -5.2125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136559881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:10 Heat of formation + Delta-G solvation = 24.498318 kcal Electronic energy + Delta-G solvation = -30139.885283 eV Core-core repulsion = 25458.088119 eV Total energy + Delta-G solvation = -4681.797163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.77438 -49.49107 -42.89848 -39.45878 -38.75085 -37.14776 -36.12581 -34.69557 -33.50249 -32.25837 -31.61848 -30.20281 -29.14810 -27.75980 -25.95202 -24.06258 -23.77548 -22.01725 -21.70951 -19.60527 -18.85821 -18.69915 -18.44048 -17.72681 -17.15588 -16.82550 -16.76068 -16.43692 -16.31082 -16.01773 -15.76675 -15.50784 -15.20073 -14.82794 -14.30316 -14.12810 -14.01078 -13.83980 -13.67140 -13.59759 -12.88404 -12.82932 -12.59150 -12.52328 -12.32176 -12.15401 -11.90596 -11.79943 -11.28996 -10.98424 -10.46358 -10.22856 -10.18546 -9.97547 -9.68853 -9.38992 -9.13880 -8.96819 -8.36731 -8.11788 -6.58923 -4.18194 0.02246 0.35251 1.71922 1.95365 2.05310 2.83261 2.85229 3.05902 3.10404 3.11420 3.17444 3.36075 3.58395 3.80168 3.90509 3.94603 4.04940 4.19407 4.39123 4.46556 4.56710 4.63724 4.83637 4.95445 5.04394 5.16363 5.24876 5.27902 5.42842 5.48402 5.62394 5.65187 5.76791 6.02121 6.21491 6.65842 7.28441 7.70933 7.79035 8.01030 8.08799 8.26240 8.69352 9.03721 9.44567 10.51734 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.003984 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.151681 B = 7026.241262 C = 8405.655685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.219 3.781 3 C 0.166 3.834 4 N -0.441 5.441 5 C -0.321 4.321 6 H 0.116 0.884 7 C 0.064 3.936 8 N -0.846 5.846 9 Si 0.863 3.137 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.255 1.255 13 C 0.544 3.456 14 O -0.527 6.527 15 C 0.016 3.984 16 N -0.272 5.272 17 N -0.242 5.242 18 C 0.115 3.885 19 C -0.058 4.058 20 C -0.134 4.134 21 C 0.124 3.876 22 F -0.126 7.126 23 C -0.165 4.165 24 C 0.119 3.881 25 F -0.118 7.118 26 C -0.050 4.050 27 C 0.055 3.945 28 O -0.449 6.449 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.279 0.721 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.201 0.799 36 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 21.384 -9.309 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.100 4.100 3 C 0.038 3.962 4 N -0.163 5.163 5 C -0.448 4.448 6 H 0.134 0.866 7 C -0.144 4.144 8 N -0.481 5.481 9 Si 0.690 3.310 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.178 1.178 13 C 0.330 3.670 14 O -0.403 6.403 15 C -0.147 4.147 16 N -0.105 5.105 17 N -0.023 5.023 18 C 0.022 3.978 19 C -0.078 4.078 20 C -0.153 4.153 21 C 0.103 3.897 22 F -0.104 7.104 23 C -0.185 4.185 24 C 0.096 3.904 25 F -0.096 7.096 26 C -0.189 4.189 27 C 0.000 4.000 28 O -0.254 6.254 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.090 0.910 32 H 0.180 0.820 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.218 0.782 36 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.630 21.130 -8.580 22.957 hybrid contribution 1.575 0.616 -0.490 1.761 sum -1.054 21.746 -9.071 23.586 Atomic orbital electron populations 1.81023 1.13077 1.08885 1.09558 1.29733 0.95511 0.92473 0.92309 1.19931 0.81687 0.92994 1.01540 1.43444 1.55718 1.12731 1.04409 1.19164 1.38885 0.86363 1.00392 0.86639 1.25389 0.95892 0.97768 0.95364 1.69709 1.39315 1.32598 1.06483 0.87210 0.80517 0.83514 0.79798 1.19308 1.20429 1.17847 1.16777 0.82710 0.85511 0.81970 1.90741 1.49988 1.31344 1.68235 1.23351 1.03702 0.93563 0.94070 1.73788 1.21211 0.98847 1.16622 1.42069 1.47059 1.07658 1.05550 1.17599 1.04169 0.81360 0.94701 1.20790 0.95740 0.95677 0.95594 1.21175 1.01750 0.92749 0.99632 1.17307 0.98988 0.80065 0.93292 1.91566 1.87123 1.35627 1.96110 1.20857 1.04235 0.94851 0.98536 1.16757 1.02457 0.92097 0.79040 1.91445 1.89302 1.88898 1.39999 1.23587 1.07835 0.95011 0.92434 1.18129 1.05752 0.88269 0.87900 1.84902 1.27697 1.54554 1.58266 0.87022 0.85159 0.91003 0.82015 0.82576 0.82174 0.78229 0.75628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.52 18.54 42.16 0.78 -8.74 16 2 C 0.22 4.45 14.97 -20.76 -0.31 4.14 16 3 C 0.17 3.26 4.09 -6.83 -0.03 3.24 16 4 N -0.44 -10.38 2.17 -119.18 -0.26 -10.64 16 5 C -0.32 -8.59 9.42 -15.00 -0.14 -8.73 16 6 H 0.12 3.49 7.85 -52.49 -0.41 3.08 16 7 C 0.06 1.64 5.32 -17.45 -0.09 1.55 16 8 N -0.85 -22.91 13.96 55.50 0.77 -22.13 16 9 Si 0.86 18.07 25.07 -169.99 -4.26 13.80 16 10 H -0.27 -4.99 6.45 56.52 0.36 -4.62 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.25 -5.17 7.11 56.52 0.40 -4.76 16 13 C 0.54 12.74 7.55 -12.56 -0.09 12.64 16 14 O -0.53 -13.91 16.38 3.25 0.05 -13.85 16 15 C 0.02 0.31 6.83 -82.67 -0.56 -0.25 16 16 N -0.27 -4.56 7.06 33.45 0.24 -4.32 16 17 N -0.24 -3.41 3.52 -10.35 -0.04 -3.45 16 18 C 0.12 1.28 6.67 -83.52 -0.56 0.72 16 19 C -0.06 -0.56 9.59 -39.41 -0.38 -0.94 16 20 C -0.13 -0.99 10.02 -39.53 -0.40 -1.38 16 21 C 0.12 0.92 7.30 -39.40 -0.29 0.63 16 22 F -0.13 -0.98 17.27 2.25 0.04 -0.95 16 23 C -0.16 -1.18 10.00 -39.48 -0.39 -1.57 16 24 C 0.12 1.08 7.22 -39.25 -0.28 0.80 16 25 F -0.12 -1.09 13.82 2.25 0.03 -1.05 16 26 C -0.05 -0.68 10.55 -16.55 -0.17 -0.86 16 27 C 0.05 0.92 7.35 -39.09 -0.29 0.63 16 28 O -0.45 -7.13 13.21 -21.98 -0.29 -7.42 16 29 H 0.11 2.19 3.16 -51.93 -0.16 2.02 16 30 H 0.13 2.23 5.18 -51.93 -0.27 1.97 16 31 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.16 1.60 7.64 -52.49 -0.40 1.20 16 33 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.20 2.16 5.61 -52.49 -0.29 1.86 16 36 H 0.39 4.30 9.07 45.56 0.41 4.71 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -32.71 331.44 -3.07 -35.78 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -1.14 Total: 7.35 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -3.99 Total: 10.63 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 1.50 Total: -49.29 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.24 Total: -21.28 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.07 Total: -2.00 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -4.26 Total: 13.80 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.71 -3.07 -35.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.280 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds