Wall clock time and date at job start Wed Apr 1 2020 05:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47002 * 29.91726 * 3 2 1 5 5 C 1.36909 * 119.99899 * 264.32219 * 4 3 2 6 6 H 1.08001 * 120.00285 * 143.09339 * 5 4 3 7 7 C 1.39017 * 119.99606 * 323.08598 * 5 4 3 8 8 N 1.31397 * 119.99332 * 159.87294 * 7 5 4 9 9 Si 1.86796 * 120.00379 * 339.87520 * 7 5 4 10 10 H 1.48498 * 109.47081 * 89.94729 * 9 7 5 11 11 H 1.48499 * 109.46960 * 209.94171 * 9 7 5 12 12 H 1.48499 * 109.47181 * 329.94277 * 9 7 5 13 13 C 1.34769 * 119.99627 * 84.31833 * 4 3 2 14 14 O 1.21643 * 120.00075 * 185.26369 * 13 4 3 15 15 C 1.47353 * 120.00669 * 5.26444 * 13 4 3 16 16 N 1.32084 * 126.45121 * 354.65580 * 15 13 4 17 17 N 1.28451 * 110.20070 * 180.02562 * 16 15 13 18 18 C 1.40169 * 124.92305 * 180.02562 * 17 16 15 19 19 C 1.38827 * 120.05431 * 359.97233 * 18 17 16 20 20 C 1.38097 * 119.97695 * 179.97438 * 19 18 17 21 21 C 1.38518 * 120.09064 * 359.97438 * 20 19 18 22 22 F 1.35108 * 119.94547 * 179.97438 * 21 20 19 23 23 C 1.38450 * 120.11104 * 359.97438 * 21 20 19 24 24 C 1.38304 * 120.01927 * 359.74520 * 23 21 20 25 25 F 1.35106 * 120.04723 * 180.27628 * 24 23 21 26 26 C 1.36101 * 110.14930 * 0.02562 * 17 16 15 27 27 C 1.35751 * 107.08174 * 0.23859 * 26 17 16 28 28 O 1.36078 * 127.26500 * 179.75941 * 27 26 17 29 29 H 1.08997 * 109.47106 * 269.92124 * 3 2 1 30 30 H 1.09002 * 109.47061 * 149.91566 * 3 2 1 31 31 H 0.97002 * 119.99530 * 180.02562 * 8 7 5 32 32 H 1.07996 * 120.01311 * 359.95497 * 19 18 17 33 33 H 1.08001 * 119.95321 * 180.02562 * 20 19 18 34 34 H 1.08010 * 119.99132 * 180.02562 * 23 21 20 35 35 H 1.08001 * 126.45834 * 179.97438 * 26 17 16 36 36 H 0.96697 * 114.00228 * 90.02428 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1963 -0.6889 5 6 3.4361 -2.3101 0.0313 6 1 3.2243 -3.2932 -0.3625 7 6 4.0535 -2.1756 1.2696 8 7 4.0263 -3.1696 2.1286 9 14 4.9215 -0.5820 1.7124 10 1 3.9597 0.3398 2.3685 11 1 6.0428 -0.8709 2.6421 12 1 5.4521 0.0520 0.4788 13 6 3.2125 -1.2010 -2.0316 14 8 3.5263 -2.2232 -2.6115 15 6 2.9589 0.0321 -2.7974 16 7 2.5185 1.1796 -2.3138 17 7 2.4091 2.0454 -3.2563 18 6 1.9689 3.3653 -3.0864 19 6 1.6113 3.8220 -1.8251 20 6 1.1783 5.1229 -1.6594 21 6 1.1007 5.9732 -2.7501 22 9 0.6762 7.2452 -2.5847 23 6 1.4574 5.5219 -4.0094 24 6 1.8972 4.2218 -4.1797 25 9 2.2507 3.7825 -5.4074 26 6 2.7826 1.4954 -4.4439 27 6 3.1353 0.2085 -4.1939 28 8 3.5696 -0.7163 -5.0927 29 1 2.9714 0.0022 1.0276 30 1 2.9710 0.8901 -0.5152 31 1 4.4568 -3.0757 2.9928 32 1 1.6714 3.1602 -0.9738 33 1 0.9006 5.4779 -0.6780 34 1 1.3965 6.1868 -4.8585 35 1 2.7921 1.9883 -5.4048 36 1 4.5290 -0.7281 -5.2125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136559881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:09 Heat of formation + Delta-G solvation = 1.281764 kcal Electronic energy + Delta-G solvation = -30140.892028 eV Core-core repulsion = 25458.088119 eV Total energy + Delta-G solvation = -4682.803909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.47504 -50.10134 -44.10658 -40.75577 -39.95780 -38.38756 -37.81967 -36.50954 -34.67696 -34.03871 -32.32875 -31.33402 -30.21651 -29.45427 -27.59013 -25.23841 -24.59139 -23.17680 -22.76294 -21.11685 -20.40337 -19.78586 -19.41944 -18.70203 -18.54599 -18.06847 -17.95526 -17.62773 -17.33627 -16.93715 -16.86119 -16.47446 -16.08868 -15.93151 -15.64949 -15.57274 -15.33840 -15.25747 -14.96477 -14.61049 -14.38986 -14.31763 -14.08948 -13.69366 -13.59550 -13.34512 -13.30136 -12.83834 -12.76881 -12.58681 -12.03672 -11.78973 -11.50844 -11.26904 -11.15525 -10.77731 -10.33123 -10.26345 -10.06571 -9.35200 -8.54406 -6.24089 -0.78335 -0.26042 0.45402 0.84568 0.95972 1.20655 1.35491 1.44896 1.49459 1.72048 2.10939 2.17054 2.23768 2.46140 2.49277 2.78630 2.85531 3.04624 3.18296 3.34599 3.43713 3.62497 3.70998 3.82165 3.97028 4.02382 4.20201 4.33311 4.37061 4.57067 4.67027 4.78325 4.83012 4.92445 5.34954 5.41963 5.65336 5.96201 6.29569 6.44718 6.51983 6.73698 6.76149 7.06520 7.57944 8.61457 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.003984 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.151681 B = 7026.241262 C = 8405.655685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.228 3.772 3 C 0.171 3.829 4 N -0.452 5.452 5 C -0.347 4.347 6 H 0.054 0.946 7 C 0.021 3.979 8 N -0.896 5.896 9 Si 0.925 3.075 10 H -0.220 1.220 11 H -0.275 1.275 12 H -0.243 1.243 13 C 0.545 3.455 14 O -0.573 6.573 15 C -0.026 4.026 16 N -0.264 5.264 17 N -0.227 5.227 18 C 0.077 3.923 19 C -0.061 4.061 20 C -0.124 4.124 21 C 0.135 3.865 22 F -0.124 7.124 23 C -0.153 4.153 24 C 0.126 3.874 25 F -0.118 7.118 26 C -0.026 4.026 27 C 0.039 3.961 28 O -0.464 6.464 29 H 0.120 0.880 30 H 0.162 0.838 31 H 0.286 0.714 32 H 0.158 0.842 33 H 0.181 0.819 34 H 0.188 0.812 35 H 0.233 0.767 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 26.777 -9.785 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.091 4.091 3 C 0.045 3.955 4 N -0.174 5.174 5 C -0.475 4.475 6 H 0.072 0.928 7 C -0.184 4.184 8 N -0.532 5.532 9 Si 0.746 3.254 10 H -0.144 1.144 11 H -0.201 1.201 12 H -0.166 1.166 13 C 0.333 3.667 14 O -0.452 6.452 15 C -0.186 4.186 16 N -0.100 5.100 17 N -0.009 5.009 18 C -0.014 4.014 19 C -0.080 4.080 20 C -0.143 4.143 21 C 0.115 3.885 22 F -0.102 7.102 23 C -0.173 4.173 24 C 0.104 3.896 25 F -0.096 7.096 26 C -0.167 4.167 27 C -0.016 4.016 28 O -0.272 6.272 29 H 0.137 0.863 30 H 0.179 0.821 31 H 0.096 0.904 32 H 0.176 0.824 33 H 0.198 0.802 34 H 0.205 0.795 35 H 0.249 0.751 36 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.780 26.547 -9.042 28.182 hybrid contribution 1.486 -0.885 -0.480 1.795 sum -1.294 25.662 -9.522 27.402 Atomic orbital electron populations 1.81019 1.13598 1.09433 1.10218 1.29838 0.95605 0.91907 0.91725 1.20143 0.81106 0.92313 1.01899 1.43399 1.56398 1.12996 1.04574 1.18693 1.41559 0.85607 1.01610 0.92768 1.26208 0.95458 1.02380 0.94322 1.69823 1.40370 1.35662 1.07310 0.86224 0.79845 0.79049 0.80317 1.14430 1.20131 1.16561 1.17311 0.81004 0.86363 0.82010 1.90687 1.51641 1.33596 1.69299 1.22686 1.07868 0.93026 0.95055 1.73563 1.20584 0.98400 1.17403 1.42355 1.45076 1.08316 1.05137 1.17963 1.07011 0.80180 0.96291 1.20864 0.95737 0.96514 0.94925 1.21381 1.00425 0.91650 1.00871 1.17392 0.97783 0.79940 0.93412 1.91588 1.86945 1.35564 1.96102 1.21090 1.02629 0.94173 0.99395 1.16804 1.02052 0.92320 0.78441 1.91434 1.89280 1.88945 1.39930 1.23944 1.05801 0.93673 0.93244 1.18292 1.06786 0.89508 0.87016 1.84843 1.29504 1.54976 1.57868 0.86341 0.82113 0.90355 0.82433 0.80170 0.79506 0.75100 0.73616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.55 18.54 20.01 0.37 -19.17 16 2 C 0.23 9.16 14.97 89.44 1.34 10.50 16 3 C 0.17 6.60 4.09 84.57 0.35 6.95 16 4 N -0.45 -21.99 2.17 -649.22 -1.41 -23.40 16 5 C -0.35 -19.80 9.42 84.09 0.79 -19.01 16 6 H 0.05 3.65 7.85 -2.91 -0.02 3.62 16 7 C 0.02 1.11 5.32 84.94 0.45 1.56 16 8 N -0.90 -50.65 13.96 21.68 0.30 -50.35 16 9 Si 0.93 36.30 25.07 68.60 1.72 38.02 16 10 H -0.22 -7.05 6.45 99.48 0.64 -6.41 16 11 H -0.28 -10.69 7.11 99.48 0.71 -9.99 16 12 H -0.24 -9.03 7.11 99.48 0.71 -8.32 16 13 C 0.54 26.65 7.55 86.64 0.65 27.31 16 14 O -0.57 -32.38 16.38 -2.26 -0.04 -32.41 16 15 C -0.03 -1.01 6.83 42.40 0.29 -0.72 16 16 N -0.26 -8.48 7.06 -48.07 -0.34 -8.81 16 17 N -0.23 -5.86 3.52 -186.65 -0.66 -6.52 16 18 C 0.08 1.47 6.67 38.15 0.25 1.72 16 19 C -0.06 -0.96 9.59 22.38 0.21 -0.74 16 20 C -0.12 -1.29 10.02 22.30 0.22 -1.07 16 21 C 0.13 1.38 7.30 22.39 0.16 1.54 16 22 F -0.12 -1.37 17.27 44.97 0.78 -0.59 16 23 C -0.15 -1.47 10.00 22.34 0.22 -1.24 16 24 C 0.13 1.80 7.22 22.48 0.16 1.96 16 25 F -0.12 -1.69 13.82 44.97 0.62 -1.07 16 26 C -0.03 -0.67 10.55 83.45 0.88 0.21 16 27 C 0.04 1.30 7.35 22.59 0.17 1.46 16 28 O -0.46 -14.85 13.21 -92.53 -1.22 -16.07 16 29 H 0.12 4.38 3.16 -2.39 -0.01 4.37 16 30 H 0.16 5.18 5.18 -2.39 -0.01 5.17 16 31 H 0.29 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.16 2.64 7.64 -2.91 -0.02 2.62 16 33 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.23 4.20 5.61 -2.91 -0.02 4.18 16 36 H 0.41 9.08 9.07 -74.06 -0.67 8.41 16 Total: -1.00 -77.46 331.44 6.77 -70.69 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.49 Total: 19.28 kcal Atomic # 6 Polarization: 24.26 SS G_CDS: 6.16 Total: 30.42 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -1.73 Total: -108.26 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -1.26 Total: -48.48 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 1.40 Total: -1.67 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 1.72 Total: 38.02 kcal Total: -77.46 6.77 -70.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.969 kcal (2) G-P(sol) polarization free energy of solvation -77.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds