Wall clock time and date at job start Wed Apr 1 2020 05:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86797 * 119.99889 * 2 1 4 4 H 1.48501 * 109.46974 * 268.95644 * 3 2 1 5 5 H 1.48498 * 109.47506 * 28.95814 * 3 2 1 6 6 H 1.48500 * 109.46753 * 148.95593 * 3 2 1 7 7 C 1.39879 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00206 * 345.62013 * 7 2 1 9 9 C 1.41184 * 119.99801 * 165.62240 * 7 2 1 10 10 C 1.40820 * 120.56595 * 332.20396 * 9 7 2 11 11 N 1.31438 * 120.38264 * 179.72128 * 10 9 7 12 12 C 1.32736 * 121.74853 * 0.52652 * 11 10 9 13 13 N 1.38653 * 119.43245 * 179.74600 * 12 11 10 14 14 C 1.37495 * 120.00081 * 353.89586 * 13 12 11 15 15 C 1.38076 * 120.55571 * 119.74602 * 14 13 12 16 16 C 1.39814 * 118.78334 * 179.97438 * 15 14 13 17 17 O 1.35254 * 120.09878 * 179.97438 * 16 15 14 18 18 N 1.32763 * 119.79590 * 0.02562 * 16 15 14 19 19 C 1.33002 * 121.12609 * 359.97438 * 18 16 15 20 20 O 1.21998 * 119.35470 * 179.71661 * 19 18 16 21 21 N 1.34572 * 121.28697 * 0.02562 * 19 18 16 22 22 C 1.46503 * 119.94054 * 179.97438 * 21 19 18 23 23 C 1.52999 * 117.49428 * 132.87300 * 22 21 19 24 24 C 1.52996 * 117.49966 * 64.21629 * 22 21 19 25 25 C 1.39736 * 121.13372 * 359.47180 * 12 11 10 26 26 Cl 1.73602 * 120.26119 * 180.23356 * 25 12 11 27 27 C 1.36700 * 119.47738 * 0.25598 * 25 12 11 28 28 H 0.97001 * 119.99513 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.81171 * 359.97438 * 10 9 7 30 30 H 0.97002 * 119.99436 * 173.89119 * 13 12 11 31 31 H 1.08004 * 120.60895 * 0.02562 * 15 14 13 32 32 H 0.96702 * 113.99653 * 180.02562 * 17 16 15 33 33 H 1.09000 * 115.55035 * 278.53850 * 22 21 19 34 34 H 1.09001 * 117.50509 * 359.97438 * 23 22 21 35 35 H 1.09009 * 117.49643 * 145.01789 * 23 22 21 36 36 H 1.09002 * 117.49910 * 214.97829 * 24 22 21 37 37 H 1.09002 * 117.49677 * 359.96842 * 24 22 21 38 38 H 1.07994 * 120.80495 * 179.97438 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.5125 2.0336 -1.3999 5 1 1.4296 2.6590 0.6778 6 1 3.5292 1.4466 0.7220 7 6 2.0083 -1.2114 0.0005 8 1 1.4936 -2.1319 0.2332 9 6 3.3869 -1.2307 -0.3031 10 6 3.9501 -0.2468 -1.1384 11 7 5.2351 -0.2651 -1.4143 12 6 6.0397 -1.2041 -0.9319 13 7 7.3871 -1.1803 -1.2582 14 6 7.8570 -0.2673 -2.1727 15 6 8.8150 0.6589 -1.8111 16 6 9.2669 1.5697 -2.7709 17 8 10.2044 2.4887 -2.4454 18 7 8.7721 1.5304 -4.0022 19 6 7.8493 0.6356 -4.3441 20 8 7.4132 0.6318 -5.4835 21 7 7.3829 -0.2615 -3.4561 22 6 6.3657 -1.2336 -3.8645 23 6 6.5911 -2.6965 -3.4772 24 6 6.7548 -2.2561 -4.9340 25 6 5.5533 -2.2130 -0.0964 26 17 6.6271 -3.4265 0.5266 27 6 4.2251 -2.2372 0.2262 28 1 -0.4849 0.8401 -0.0004 29 1 3.3234 0.5296 -1.5515 30 1 7.9982 -1.8077 -0.8413 31 1 9.2088 0.6788 -0.8057 32 1 10.4517 3.0734 -3.1748 33 1 5.3394 -0.8665 -3.8687 34 1 7.4963 -2.9359 -2.9191 35 1 5.7129 -3.2920 -3.2272 36 1 5.9843 -2.5619 -5.6419 37 1 7.7674 -2.2052 -5.3343 38 1 3.8262 -3.0072 0.8698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156943472.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:22 Heat of formation + Delta-G solvation = 42.410169 kcal Electronic energy + Delta-G solvation = -28632.238781 eV Core-core repulsion = 24503.015014 eV Total energy + Delta-G solvation = -4129.223767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71860 -39.56163 -38.67371 -37.38117 -36.46192 -36.23853 -35.02478 -33.90811 -32.61182 -31.66113 -30.70210 -29.40398 -25.76352 -24.35099 -23.89937 -22.85300 -22.21361 -21.75283 -21.27029 -19.54968 -18.38764 -18.21417 -17.76251 -17.26816 -16.10511 -15.83106 -15.76622 -15.40820 -15.06513 -14.84043 -14.68089 -14.37992 -14.08504 -13.88003 -13.59748 -13.53467 -13.04015 -12.65922 -12.45396 -11.96323 -11.87307 -11.54286 -11.52517 -11.24207 -11.09129 -10.86216 -10.66641 -10.61776 -10.35925 -10.27390 -10.11568 -9.83644 -9.64296 -9.52462 -8.90252 -8.75231 -8.28690 -7.58504 -7.36374 -4.86407 0.80920 1.77498 1.90046 2.12299 2.41662 2.49760 2.86985 2.97260 3.03091 3.11119 3.49724 3.62038 3.70533 3.98912 4.08556 4.53060 4.76048 4.85776 4.90749 4.95091 5.18566 5.24334 5.38486 5.55767 5.63799 5.67581 5.83437 5.87808 5.97687 6.08945 6.12490 6.24148 6.42344 6.57291 6.68077 6.83325 7.10348 7.14451 7.38777 7.46886 7.82329 7.96679 8.07839 8.23787 8.43344 8.81649 9.63468 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.010423 B = 0.004624 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.778626 B = 6053.887390 C = 6893.300870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.080 3.920 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.412 4.412 8 H 0.100 0.900 9 C 0.036 3.964 10 C -0.008 4.008 11 N -0.462 5.462 12 C 0.233 3.767 13 N -0.664 5.664 14 C 0.515 3.485 15 C -0.331 4.331 16 C 0.464 3.536 17 O -0.452 6.452 18 N -0.636 5.636 19 C 0.665 3.335 20 O -0.539 6.539 21 N -0.492 5.492 22 C 0.069 3.931 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.050 4.050 26 Cl -0.097 7.097 27 C -0.142 4.142 28 H 0.294 0.706 29 H 0.144 0.856 30 H 0.425 0.575 31 H 0.159 0.841 32 H 0.412 0.588 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.307 -2.646 0.255 12.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.440 4.440 8 H 0.118 0.882 9 C 0.030 3.970 10 C -0.170 4.170 11 N -0.175 5.175 12 C 0.005 3.995 13 N -0.302 5.302 14 C 0.298 3.702 15 C -0.361 4.361 16 C 0.267 3.733 17 O -0.247 6.247 18 N -0.395 5.395 19 C 0.367 3.633 20 O -0.414 6.414 21 N -0.211 5.211 22 C -0.035 4.035 23 C -0.198 4.198 24 C -0.199 4.199 25 C -0.082 4.082 26 Cl -0.069 7.069 27 C -0.169 4.169 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.267 0.733 31 H 0.176 0.824 32 H 0.268 0.732 33 H 0.152 0.848 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.230 -1.717 -1.161 12.405 hybrid contribution -0.030 -0.291 1.054 1.093 sum 12.201 -2.008 -0.107 12.365 Atomic orbital electron populations 1.69644 1.08031 1.31241 1.31573 1.26229 0.94981 1.01915 0.91103 0.86376 0.80576 0.79435 0.79848 1.18729 1.21030 1.16936 1.19453 0.91097 0.96220 1.37187 0.88215 1.18475 0.94437 0.92109 0.92028 1.22487 0.89394 1.02799 1.02342 1.66636 1.06128 1.21419 1.23270 1.16917 0.84183 0.95508 1.02866 1.40967 1.07244 1.38323 1.43657 1.17628 0.85685 0.86330 0.80539 1.20405 1.11635 1.01626 1.02453 1.19885 0.81776 0.83671 0.88017 1.84980 1.52700 1.44454 1.42547 1.69522 1.21964 1.29736 1.18261 1.17129 0.81674 0.79081 0.85428 1.90973 1.60222 1.72439 1.17754 1.46668 1.35432 1.30377 1.08669 1.21794 0.92275 0.84825 1.04647 1.23290 1.04138 0.94789 0.97538 1.23261 1.03475 1.00817 0.92337 1.20709 0.91934 0.92486 1.03028 1.98296 1.65830 1.55946 1.86825 1.20914 0.89829 1.02896 1.03213 0.89516 0.83903 0.73254 0.82375 0.73164 0.84803 0.88558 0.87274 0.87430 0.88601 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.26 13.93 55.54 0.77 -17.48 16 2 C 0.08 1.82 5.46 -17.34 -0.09 1.73 16 3 Si 0.91 18.64 24.41 -169.99 -4.15 14.49 16 4 H -0.26 -5.33 6.43 56.52 0.36 -4.97 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.25 -5.23 6.87 56.52 0.39 -4.84 16 7 C -0.41 -9.39 9.62 -37.85 -0.36 -9.75 16 8 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 9 C 0.04 0.76 5.21 -106.65 -0.56 0.20 16 10 C -0.01 -0.18 8.35 -16.74 -0.14 -0.32 16 11 N -0.46 -9.31 7.88 -11.70 -0.09 -9.40 16 12 C 0.23 4.06 5.43 -154.85 -0.84 3.22 16 13 N -0.66 -9.56 3.55 -11.10 -0.04 -9.60 16 14 C 0.52 7.92 6.06 -152.93 -0.93 6.99 16 15 C -0.33 -4.61 10.00 -39.05 -0.39 -5.00 16 16 C 0.46 6.62 7.89 -16.56 -0.13 6.49 16 17 O -0.45 -4.87 13.55 -17.45 -0.24 -5.11 16 18 N -0.64 -11.05 10.38 -16.93 -0.18 -11.22 16 19 C 0.67 12.90 8.25 -88.67 -0.73 12.17 16 20 O -0.54 -12.00 16.75 4.92 0.08 -11.92 16 21 N -0.49 -8.43 2.85 -113.72 -0.32 -8.76 16 22 C 0.07 1.13 3.77 -67.93 -0.26 0.87 16 23 C -0.16 -2.16 8.24 -26.70 -0.22 -2.38 16 24 C -0.16 -2.24 9.86 -26.70 -0.26 -2.50 16 25 C -0.05 -0.85 6.32 -39.58 -0.25 -1.10 16 26 Cl -0.10 -1.32 27.57 -51.86 -1.43 -2.75 16 27 C -0.14 -2.68 9.66 -38.99 -0.38 -3.05 16 28 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 29 H 0.14 3.13 4.00 -52.49 -0.21 2.92 16 30 H 0.43 5.11 7.45 -40.82 -0.30 4.80 16 31 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 32 H 0.41 2.86 8.98 45.56 0.41 3.27 16 33 H 0.13 2.48 7.65 -51.93 -0.40 2.09 16 34 H 0.10 1.21 7.29 -51.93 -0.38 0.84 16 35 H 0.11 1.47 8.14 -51.92 -0.42 1.05 16 36 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -27.56 337.66 -8.64 -36.20 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -2.60 Total: 12.88 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -5.54 Total: 7.58 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.14 Total: -56.47 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.15 Total: -17.02 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.15 Total: 14.49 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.43 Total: -2.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.56 -8.64 -36.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156943472.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.613 kcal (2) G-P(sol) polarization free energy of solvation -27.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds