Wall clock time and date at job start Wed Apr 1 2020 05:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86797 * 119.99889 * 2 1 4 4 H 1.48501 * 109.46974 * 268.95644 * 3 2 1 5 5 H 1.48498 * 109.47506 * 28.95814 * 3 2 1 6 6 H 1.48500 * 109.46753 * 148.95593 * 3 2 1 7 7 C 1.39879 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00206 * 345.62013 * 7 2 1 9 9 C 1.41184 * 119.99801 * 165.62240 * 7 2 1 10 10 C 1.40820 * 120.56595 * 332.20396 * 9 7 2 11 11 N 1.31438 * 120.38264 * 179.72128 * 10 9 7 12 12 C 1.32736 * 121.74853 * 0.52652 * 11 10 9 13 13 N 1.38653 * 119.43245 * 179.74600 * 12 11 10 14 14 C 1.37495 * 120.00081 * 353.89586 * 13 12 11 15 15 C 1.38076 * 120.55571 * 119.74602 * 14 13 12 16 16 C 1.39814 * 118.78334 * 179.97438 * 15 14 13 17 17 O 1.35254 * 120.09878 * 179.97438 * 16 15 14 18 18 N 1.32763 * 119.79590 * 0.02562 * 16 15 14 19 19 C 1.33002 * 121.12609 * 359.97438 * 18 16 15 20 20 O 1.21998 * 119.35470 * 179.71661 * 19 18 16 21 21 N 1.34572 * 121.28697 * 0.02562 * 19 18 16 22 22 C 1.46503 * 119.94054 * 179.97438 * 21 19 18 23 23 C 1.52999 * 117.49428 * 132.87300 * 22 21 19 24 24 C 1.52996 * 117.49966 * 64.21629 * 22 21 19 25 25 C 1.39736 * 121.13372 * 359.47180 * 12 11 10 26 26 Cl 1.73602 * 120.26119 * 180.23356 * 25 12 11 27 27 C 1.36700 * 119.47738 * 0.25598 * 25 12 11 28 28 H 0.97001 * 119.99513 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.81171 * 359.97438 * 10 9 7 30 30 H 0.97002 * 119.99436 * 173.89119 * 13 12 11 31 31 H 1.08004 * 120.60895 * 0.02562 * 15 14 13 32 32 H 0.96702 * 113.99653 * 180.02562 * 17 16 15 33 33 H 1.09000 * 115.55035 * 278.53850 * 22 21 19 34 34 H 1.09001 * 117.50509 * 359.97438 * 23 22 21 35 35 H 1.09009 * 117.49643 * 145.01789 * 23 22 21 36 36 H 1.09002 * 117.49910 * 214.97829 * 24 22 21 37 37 H 1.09002 * 117.49677 * 359.96842 * 24 22 21 38 38 H 1.07994 * 120.80495 * 179.97438 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.5125 2.0336 -1.3999 5 1 1.4296 2.6590 0.6778 6 1 3.5292 1.4466 0.7220 7 6 2.0083 -1.2114 0.0005 8 1 1.4936 -2.1319 0.2332 9 6 3.3869 -1.2307 -0.3031 10 6 3.9501 -0.2468 -1.1384 11 7 5.2351 -0.2651 -1.4143 12 6 6.0397 -1.2041 -0.9319 13 7 7.3871 -1.1803 -1.2582 14 6 7.8570 -0.2673 -2.1727 15 6 8.8150 0.6589 -1.8111 16 6 9.2669 1.5697 -2.7709 17 8 10.2044 2.4887 -2.4454 18 7 8.7721 1.5304 -4.0022 19 6 7.8493 0.6356 -4.3441 20 8 7.4132 0.6318 -5.4835 21 7 7.3829 -0.2615 -3.4561 22 6 6.3657 -1.2336 -3.8645 23 6 6.5911 -2.6965 -3.4772 24 6 6.7548 -2.2561 -4.9340 25 6 5.5533 -2.2130 -0.0964 26 17 6.6271 -3.4265 0.5266 27 6 4.2251 -2.2372 0.2262 28 1 -0.4849 0.8401 -0.0004 29 1 3.3234 0.5296 -1.5515 30 1 7.9982 -1.8077 -0.8413 31 1 9.2088 0.6788 -0.8057 32 1 10.4517 3.0734 -3.1748 33 1 5.3394 -0.8665 -3.8687 34 1 7.4963 -2.9359 -2.9191 35 1 5.7129 -3.2920 -3.2272 36 1 5.9843 -2.5619 -5.6419 37 1 7.7674 -2.2052 -5.3343 38 1 3.8262 -3.0072 0.8698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156943472.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:21 Heat of formation + Delta-G solvation = 21.953352 kcal Electronic energy + Delta-G solvation = -28633.125855 eV Core-core repulsion = 24503.015014 eV Total energy + Delta-G solvation = -4130.110841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.01458 -41.04622 -39.79102 -38.80682 -37.65901 -37.51042 -36.44935 -35.45596 -33.88629 -33.22194 -32.13197 -30.78549 -27.26118 -25.66800 -25.30507 -24.27669 -23.49630 -23.05209 -22.62366 -20.72480 -19.93639 -19.57379 -19.18710 -18.53021 -17.50225 -17.24196 -17.12482 -16.77103 -16.30265 -16.23585 -16.11735 -15.56142 -15.49324 -15.15428 -15.04523 -14.73703 -14.62316 -14.00334 -13.92583 -13.44256 -13.20615 -12.98994 -12.76787 -12.74966 -12.63226 -12.18089 -12.00662 -11.86446 -11.78831 -11.65460 -11.57274 -11.18047 -11.02056 -10.91709 -10.42795 -10.29093 -9.63214 -9.04125 -9.02419 -6.55475 -0.43352 0.28023 0.50297 0.64444 1.11578 1.15117 1.22815 1.33225 1.38532 1.84606 1.96862 2.37060 2.45162 2.55430 2.68447 3.27087 3.31517 3.55279 3.63478 3.71774 3.81909 4.06561 4.14323 4.19894 4.29731 4.45334 4.53972 4.63316 4.68088 4.77477 4.84774 4.99599 5.07298 5.09365 5.25269 5.37719 5.56003 5.95767 6.04001 6.18579 6.24647 6.34993 6.57849 6.75755 7.09366 7.28304 8.03064 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.010423 B = 0.004624 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.778626 B = 6053.887390 C = 6893.300870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.057 3.943 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.445 4.445 8 H 0.079 0.921 9 C 0.027 3.973 10 C -0.022 4.022 11 N -0.482 5.482 12 C 0.267 3.733 13 N -0.649 5.649 14 C 0.498 3.502 15 C -0.312 4.312 16 C 0.471 3.529 17 O -0.436 6.436 18 N -0.654 5.654 19 C 0.657 3.343 20 O -0.584 6.584 21 N -0.491 5.491 22 C 0.038 3.962 23 C -0.137 4.137 24 C -0.150 4.150 25 C -0.052 4.052 26 Cl -0.054 7.054 27 C -0.131 4.131 28 H 0.299 0.701 29 H 0.131 0.869 30 H 0.440 0.560 31 H 0.189 0.811 32 H 0.431 0.569 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.940 -3.337 1.414 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.161 4.161 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.474 4.474 8 H 0.097 0.903 9 C 0.021 3.979 10 C -0.181 4.181 11 N -0.195 5.195 12 C 0.035 3.965 13 N -0.289 5.289 14 C 0.282 3.718 15 C -0.341 4.341 16 C 0.274 3.726 17 O -0.232 6.232 18 N -0.415 5.415 19 C 0.359 3.641 20 O -0.462 6.462 21 N -0.210 5.210 22 C -0.066 4.066 23 C -0.175 4.175 24 C -0.187 4.187 25 C -0.084 4.084 26 Cl -0.025 7.025 27 C -0.158 4.158 28 H 0.110 0.890 29 H 0.148 0.852 30 H 0.286 0.714 31 H 0.206 0.794 32 H 0.291 0.709 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 15.902 -2.389 0.042 16.080 hybrid contribution -0.682 -0.161 0.686 0.981 sum 15.220 -2.550 0.728 15.449 Atomic orbital electron populations 1.69667 1.08758 1.31897 1.34710 1.26605 0.95271 1.03406 0.90819 0.85730 0.79279 0.77833 0.79194 1.19395 1.20011 1.18047 1.19364 0.92094 0.95700 1.40251 0.90335 1.18501 0.94159 0.93016 0.92217 1.22314 0.89941 1.02948 1.02856 1.66656 1.05937 1.22857 1.24079 1.17173 0.84918 0.93987 1.00426 1.40843 1.06122 1.38560 1.43363 1.17859 0.86625 0.87243 0.80034 1.20776 1.09972 0.99884 1.03517 1.19988 0.81625 0.83981 0.86970 1.84982 1.51106 1.43833 1.43309 1.69466 1.22167 1.29782 1.20044 1.17318 0.81972 0.79573 0.85280 1.90926 1.61933 1.73820 1.19566 1.46522 1.35210 1.30092 1.09144 1.21759 0.91185 0.85900 1.07785 1.23333 1.04704 0.92124 0.97328 1.23285 1.03675 0.99080 0.92684 1.20644 0.92034 0.93210 1.02474 1.98316 1.64070 1.53962 1.86162 1.21128 0.90459 1.01964 1.02244 0.89026 0.85215 0.71442 0.79354 0.70919 0.87641 0.86995 0.86998 0.86438 0.88639 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.40 13.93 21.82 0.30 -40.10 16 2 C 0.06 2.70 5.46 85.23 0.47 3.17 16 3 Si 0.95 39.57 24.41 68.60 1.67 41.24 16 4 H -0.27 -11.17 6.43 99.48 0.64 -10.53 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 6 H -0.26 -10.89 6.87 99.48 0.68 -10.21 16 7 C -0.44 -21.15 9.62 23.39 0.23 -20.92 16 8 H 0.08 3.94 8.06 -2.91 -0.02 3.91 16 9 C 0.03 1.15 5.21 -21.18 -0.11 1.04 16 10 C -0.02 -0.93 8.35 85.38 0.71 -0.22 16 11 N -0.48 -18.95 7.88 -190.94 -1.51 -20.46 16 12 C 0.27 8.60 5.43 133.23 0.72 9.32 16 13 N -0.65 -16.35 3.55 -189.04 -0.67 -17.02 16 14 C 0.50 13.83 6.06 131.94 0.80 14.62 16 15 C -0.31 -7.45 10.00 22.61 0.23 -7.23 16 16 C 0.47 11.92 7.89 84.93 0.67 12.59 16 17 O -0.44 -7.65 13.55 -85.37 -1.16 -8.81 16 18 N -0.65 -21.67 10.38 -439.39 -4.56 -26.23 16 19 C 0.66 25.09 8.25 179.67 1.48 26.57 16 20 O -0.58 -26.38 16.75 -5.31 -0.09 -26.47 16 21 N -0.49 -16.19 2.85 -631.91 -1.80 -17.99 16 22 C 0.04 1.23 3.77 44.99 0.17 1.39 16 23 C -0.14 -3.39 8.24 30.62 0.25 -3.14 16 24 C -0.15 -3.98 9.86 30.62 0.30 -3.68 16 25 C -0.05 -1.60 6.32 22.27 0.14 -1.46 16 26 Cl -0.05 -1.23 27.57 -2.72 -0.07 -1.30 16 27 C -0.13 -4.74 9.66 22.65 0.22 -4.52 16 28 H 0.30 13.25 8.30 -92.71 -0.77 12.48 16 29 H 0.13 5.88 4.00 -2.91 -0.01 5.87 16 30 H 0.44 8.44 7.45 -92.71 -0.69 7.75 16 31 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.43 4.40 8.98 -74.06 -0.66 3.74 16 33 H 0.11 4.02 7.65 -2.39 -0.02 4.00 16 34 H 0.11 2.40 7.29 -2.39 -0.02 2.38 16 35 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 36 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -62.18 337.66 -1.87 -64.06 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.27 Total: 25.52 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 6.28 Total: 27.55 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -8.23 Total: -121.80 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.25 Total: -35.27 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.67 Total: 41.24 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.07 Total: -1.30 kcal Total: -62.18 -1.87 -64.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156943472.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.010 kcal (2) G-P(sol) polarization free energy of solvation -62.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds