Wall clock time and date at job start Wed Apr 1 2020 05:14:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30895 * 1
3 3 Si 1.86797 * 119.99889 * 2 1
4 4 H 1.48501 * 109.46974 * 268.95644 * 3 2 1
5 5 H 1.48498 * 109.47506 * 28.95814 * 3 2 1
6 6 H 1.48500 * 109.46753 * 148.95593 * 3 2 1
7 7 C 1.39879 * 119.99641 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00206 * 345.62013 * 7 2 1
9 9 C 1.41184 * 119.99801 * 165.62240 * 7 2 1
10 10 C 1.40820 * 120.56595 * 332.20396 * 9 7 2
11 11 N 1.31438 * 120.38264 * 179.72128 * 10 9 7
12 12 C 1.32736 * 121.74853 * 0.52652 * 11 10 9
13 13 N 1.38653 * 119.43245 * 179.74600 * 12 11 10
14 14 C 1.37495 * 120.00081 * 353.89586 * 13 12 11
15 15 C 1.38076 * 120.55571 * 119.74602 * 14 13 12
16 16 C 1.39814 * 118.78334 * 179.97438 * 15 14 13
17 17 O 1.35254 * 120.09878 * 179.97438 * 16 15 14
18 18 N 1.32763 * 119.79590 * 0.02562 * 16 15 14
19 19 C 1.33002 * 121.12609 * 359.97438 * 18 16 15
20 20 O 1.21998 * 119.35470 * 179.71661 * 19 18 16
21 21 N 1.34572 * 121.28697 * 0.02562 * 19 18 16
22 22 C 1.46503 * 119.94054 * 179.97438 * 21 19 18
23 23 C 1.52999 * 117.49428 * 132.87300 * 22 21 19
24 24 C 1.52996 * 117.49966 * 64.21629 * 22 21 19
25 25 C 1.39736 * 121.13372 * 359.47180 * 12 11 10
26 26 Cl 1.73602 * 120.26119 * 180.23356 * 25 12 11
27 27 C 1.36700 * 119.47738 * 0.25598 * 25 12 11
28 28 H 0.97001 * 119.99513 * 0.02562 * 1 2 3
29 29 H 1.07995 * 119.81171 * 359.97438 * 10 9 7
30 30 H 0.97002 * 119.99436 * 173.89119 * 13 12 11
31 31 H 1.08004 * 120.60895 * 0.02562 * 15 14 13
32 32 H 0.96702 * 113.99653 * 180.02562 * 17 16 15
33 33 H 1.09000 * 115.55035 * 278.53850 * 22 21 19
34 34 H 1.09001 * 117.50509 * 359.97438 * 23 22 21
35 35 H 1.09009 * 117.49643 * 145.01789 * 23 22 21
36 36 H 1.09002 * 117.49910 * 214.97829 * 24 22 21
37 37 H 1.09002 * 117.49677 * 359.96842 * 24 22 21
38 38 H 1.07994 * 120.80495 * 179.97438 * 27 25 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3089 0.0000 0.0000
3 14 2.2429 1.6177 0.0000
4 1 2.5125 2.0336 -1.3999
5 1 1.4296 2.6590 0.6778
6 1 3.5292 1.4466 0.7220
7 6 2.0083 -1.2114 0.0005
8 1 1.4936 -2.1319 0.2332
9 6 3.3869 -1.2307 -0.3031
10 6 3.9501 -0.2468 -1.1384
11 7 5.2351 -0.2651 -1.4143
12 6 6.0397 -1.2041 -0.9319
13 7 7.3871 -1.1803 -1.2582
14 6 7.8570 -0.2673 -2.1727
15 6 8.8150 0.6589 -1.8111
16 6 9.2669 1.5697 -2.7709
17 8 10.2044 2.4887 -2.4454
18 7 8.7721 1.5304 -4.0022
19 6 7.8493 0.6356 -4.3441
20 8 7.4132 0.6318 -5.4835
21 7 7.3829 -0.2615 -3.4561
22 6 6.3657 -1.2336 -3.8645
23 6 6.5911 -2.6965 -3.4772
24 6 6.7548 -2.2561 -4.9340
25 6 5.5533 -2.2130 -0.0964
26 17 6.6271 -3.4265 0.5266
27 6 4.2251 -2.2372 0.2262
28 1 -0.4849 0.8401 -0.0004
29 1 3.3234 0.5296 -1.5515
30 1 7.9982 -1.8077 -0.8413
31 1 9.2088 0.6788 -0.8057
32 1 10.4517 3.0734 -3.1748
33 1 5.3394 -0.8665 -3.8687
34 1 7.4963 -2.9359 -2.9191
35 1 5.7129 -3.2920 -3.2272
36 1 5.9843 -2.5619 -5.6419
37 1 7.7674 -2.2052 -5.3343
38 1 3.8262 -3.0072 0.8698
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001156943472.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:14:21
Heat of formation + Delta-G solvation = 21.953352 kcal
Electronic energy + Delta-G solvation = -28633.125855 eV
Core-core repulsion = 24503.015014 eV
Total energy + Delta-G solvation = -4130.110841 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 348.078 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-43.01458 -41.04622 -39.79102 -38.80682 -37.65901 -37.51042 -36.44935 -35.45596
-33.88629 -33.22194 -32.13197 -30.78549 -27.26118 -25.66800 -25.30507 -24.27669
-23.49630 -23.05209 -22.62366 -20.72480 -19.93639 -19.57379 -19.18710 -18.53021
-17.50225 -17.24196 -17.12482 -16.77103 -16.30265 -16.23585 -16.11735 -15.56142
-15.49324 -15.15428 -15.04523 -14.73703 -14.62316 -14.00334 -13.92583 -13.44256
-13.20615 -12.98994 -12.76787 -12.74966 -12.63226 -12.18089 -12.00662 -11.86446
-11.78831 -11.65460 -11.57274 -11.18047 -11.02056 -10.91709 -10.42795 -10.29093
-9.63214 -9.04125 -9.02419 -6.55475 -0.43352 0.28023 0.50297 0.64444
1.11578 1.15117 1.22815 1.33225 1.38532 1.84606 1.96862 2.37060
2.45162 2.55430 2.68447 3.27087 3.31517 3.55279 3.63478 3.71774
3.81909 4.06561 4.14323 4.19894 4.29731 4.45334 4.53972 4.63316
4.68088 4.77477 4.84774 4.99599 5.07298 5.09365 5.25269 5.37719
5.56003 5.95767 6.04001 6.18579 6.24647 6.34993 6.57849 6.75755
7.09366 7.28304 8.03064
Molecular weight = 348.08amu
Principal moments of inertia in cm(-1)
A = 0.010423 B = 0.004624 C = 0.004061
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2685.778626 B = 6053.887390 C = 6893.300870
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.826 5.826
2 C 0.057 3.943
3 Si 0.954 3.046
4 H -0.267 1.267
5 H -0.274 1.274
6 H -0.256 1.256
7 C -0.445 4.445
8 H 0.079 0.921
9 C 0.027 3.973
10 C -0.022 4.022
11 N -0.482 5.482
12 C 0.267 3.733
13 N -0.649 5.649
14 C 0.498 3.502
15 C -0.312 4.312
16 C 0.471 3.529
17 O -0.436 6.436
18 N -0.654 5.654
19 C 0.657 3.343
20 O -0.584 6.584
21 N -0.491 5.491
22 C 0.038 3.962
23 C -0.137 4.137
24 C -0.150 4.150
25 C -0.052 4.052
26 Cl -0.054 7.054
27 C -0.131 4.131
28 H 0.299 0.701
29 H 0.131 0.869
30 H 0.440 0.560
31 H 0.189 0.811
32 H 0.431 0.569
33 H 0.106 0.894
34 H 0.112 0.888
35 H 0.112 0.888
36 H 0.117 0.883
37 H 0.095 0.905
38 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.940 -3.337 1.414 16.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.450 5.450
2 C -0.161 4.161
3 Si 0.780 3.220
4 H -0.194 1.194
5 H -0.200 1.200
6 H -0.180 1.180
7 C -0.474 4.474
8 H 0.097 0.903
9 C 0.021 3.979
10 C -0.181 4.181
11 N -0.195 5.195
12 C 0.035 3.965
13 N -0.289 5.289
14 C 0.282 3.718
15 C -0.341 4.341
16 C 0.274 3.726
17 O -0.232 6.232
18 N -0.415 5.415
19 C 0.359 3.641
20 O -0.462 6.462
21 N -0.210 5.210
22 C -0.066 4.066
23 C -0.175 4.175
24 C -0.187 4.187
25 C -0.084 4.084
26 Cl -0.025 7.025
27 C -0.158 4.158
28 H 0.110 0.890
29 H 0.148 0.852
30 H 0.286 0.714
31 H 0.206 0.794
32 H 0.291 0.709
33 H 0.124 0.876
34 H 0.130 0.870
35 H 0.130 0.870
36 H 0.136 0.864
37 H 0.114 0.886
38 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 15.902 -2.389 0.042 16.080
hybrid contribution -0.682 -0.161 0.686 0.981
sum 15.220 -2.550 0.728 15.449
Atomic orbital electron populations
1.69667 1.08758 1.31897 1.34710 1.26605 0.95271 1.03406 0.90819
0.85730 0.79279 0.77833 0.79194 1.19395 1.20011 1.18047 1.19364
0.92094 0.95700 1.40251 0.90335 1.18501 0.94159 0.93016 0.92217
1.22314 0.89941 1.02948 1.02856 1.66656 1.05937 1.22857 1.24079
1.17173 0.84918 0.93987 1.00426 1.40843 1.06122 1.38560 1.43363
1.17859 0.86625 0.87243 0.80034 1.20776 1.09972 0.99884 1.03517
1.19988 0.81625 0.83981 0.86970 1.84982 1.51106 1.43833 1.43309
1.69466 1.22167 1.29782 1.20044 1.17318 0.81972 0.79573 0.85280
1.90926 1.61933 1.73820 1.19566 1.46522 1.35210 1.30092 1.09144
1.21759 0.91185 0.85900 1.07785 1.23333 1.04704 0.92124 0.97328
1.23285 1.03675 0.99080 0.92684 1.20644 0.92034 0.93210 1.02474
1.98316 1.64070 1.53962 1.86162 1.21128 0.90459 1.01964 1.02244
0.89026 0.85215 0.71442 0.79354 0.70919 0.87641 0.86995 0.86998
0.86438 0.88639 0.84063
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -40.40 13.93 21.82 0.30 -40.10 16
2 C 0.06 2.70 5.46 85.23 0.47 3.17 16
3 Si 0.95 39.57 24.41 68.60 1.67 41.24 16
4 H -0.27 -11.17 6.43 99.48 0.64 -10.53 16
5 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16
6 H -0.26 -10.89 6.87 99.48 0.68 -10.21 16
7 C -0.44 -21.15 9.62 23.39 0.23 -20.92 16
8 H 0.08 3.94 8.06 -2.91 -0.02 3.91 16
9 C 0.03 1.15 5.21 -21.18 -0.11 1.04 16
10 C -0.02 -0.93 8.35 85.38 0.71 -0.22 16
11 N -0.48 -18.95 7.88 -190.94 -1.51 -20.46 16
12 C 0.27 8.60 5.43 133.23 0.72 9.32 16
13 N -0.65 -16.35 3.55 -189.04 -0.67 -17.02 16
14 C 0.50 13.83 6.06 131.94 0.80 14.62 16
15 C -0.31 -7.45 10.00 22.61 0.23 -7.23 16
16 C 0.47 11.92 7.89 84.93 0.67 12.59 16
17 O -0.44 -7.65 13.55 -85.37 -1.16 -8.81 16
18 N -0.65 -21.67 10.38 -439.39 -4.56 -26.23 16
19 C 0.66 25.09 8.25 179.67 1.48 26.57 16
20 O -0.58 -26.38 16.75 -5.31 -0.09 -26.47 16
21 N -0.49 -16.19 2.85 -631.91 -1.80 -17.99 16
22 C 0.04 1.23 3.77 44.99 0.17 1.39 16
23 C -0.14 -3.39 8.24 30.62 0.25 -3.14 16
24 C -0.15 -3.98 9.86 30.62 0.30 -3.68 16
25 C -0.05 -1.60 6.32 22.27 0.14 -1.46 16
26 Cl -0.05 -1.23 27.57 -2.72 -0.07 -1.30 16
27 C -0.13 -4.74 9.66 22.65 0.22 -4.52 16
28 H 0.30 13.25 8.30 -92.71 -0.77 12.48 16
29 H 0.13 5.88 4.00 -2.91 -0.01 5.87 16
30 H 0.44 8.44 7.45 -92.71 -0.69 7.75 16
31 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16
32 H 0.43 4.40 8.98 -74.06 -0.66 3.74 16
33 H 0.11 4.02 7.65 -2.39 -0.02 4.00 16
34 H 0.11 2.40 7.29 -2.39 -0.02 2.38 16
35 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16
36 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16
37 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16
38 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16
Total: -1.00 -62.18 337.66 -1.87 -64.06
By element:
Atomic # 1 Polarization: 25.79 SS G_CDS: -0.27 Total: 25.52 kcal
Atomic # 6 Polarization: 21.27 SS G_CDS: 6.28 Total: 27.55 kcal
Atomic # 7 Polarization: -113.56 SS G_CDS: -8.23 Total: -121.80 kcal
Atomic # 8 Polarization: -34.03 SS G_CDS: -1.25 Total: -35.27 kcal
Atomic # 14 Polarization: 39.57 SS G_CDS: 1.67 Total: 41.24 kcal
Atomic # 17 Polarization: -1.23 SS G_CDS: -0.07 Total: -1.30 kcal
Total: -62.18 -1.87 -64.06 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001156943472.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.010 kcal
(2) G-P(sol) polarization free energy of solvation -62.184 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.827 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.873 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.953 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds