Wall clock time and date at job start Wed Apr 1 2020 04:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47003 * 2 1 4 4 N 1.46503 * 109.46970 * 180.02562 * 3 2 1 5 5 C 1.46502 * 120.00012 * 275.00106 * 4 3 2 6 6 C 1.50689 * 109.47312 * 275.00079 * 5 4 3 7 7 H 1.08003 * 120.00153 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99477 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00433 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46909 * 60.00345 * 10 8 6 12 12 H 1.48495 * 109.46979 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47052 * 300.00408 * 10 8 6 14 14 S 1.65598 * 119.99810 * 95.00201 * 4 3 2 15 15 O 1.42101 * 106.40288 * 336.46306 * 14 4 3 16 16 O 1.42098 * 106.40155 * 203.53732 * 14 4 3 17 17 C 1.76202 * 107.21615 * 89.99997 * 14 4 3 18 18 C 1.38464 * 120.42572 * 114.99834 * 17 14 4 19 19 C 1.38718 * 118.49967 * 179.97438 * 18 17 14 20 20 C 1.38265 * 119.27715 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 119.60263 * 179.97438 * 20 19 18 22 22 N 1.32024 * 120.79821 * 359.97438 * 20 19 18 23 23 C 1.32292 * 121.63324 * 0.02582 * 22 20 19 24 24 O 1.35676 * 119.68109 * 179.97438 * 23 22 20 25 25 C 1.42905 * 116.99822 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47164 * 299.99722 * 1 2 3 27 27 H 1.09004 * 109.46975 * 59.99607 * 1 2 3 28 28 H 1.08996 * 109.47384 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46877 * 240.00949 * 2 1 3 30 30 H 1.08991 * 109.47533 * 120.00180 * 2 1 3 31 31 H 1.09000 * 109.46934 * 60.00136 * 3 2 1 32 32 H 1.08997 * 109.47788 * 300.00354 * 3 2 1 33 33 H 1.08997 * 109.46921 * 35.00719 * 5 4 3 34 34 H 1.09004 * 109.46872 * 154.99839 * 5 4 3 35 35 H 0.97002 * 120.00222 * 179.97438 * 9 8 6 36 36 H 1.07997 * 120.75243 * 359.95900 * 18 17 14 37 37 H 1.08003 * 120.36768 * 180.02562 * 19 18 17 38 38 H 1.08992 * 109.47418 * 180.02562 * 25 24 23 39 39 H 1.09004 * 109.46917 * 300.00653 * 25 24 23 40 40 H 1.09002 * 109.47052 * 60.00347 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.3317 1.2630 6 6 4.3822 2.6982 1.8816 7 1 3.9695 3.5629 1.3831 8 6 5.0411 2.8448 3.0839 9 7 5.5441 1.7919 3.6905 10 14 5.2204 4.5388 3.8504 11 1 3.8744 5.1110 4.1069 12 1 5.9634 4.4264 5.1312 13 1 5.9666 5.4256 2.9220 14 16 4.3323 1.5678 -1.4296 15 8 3.4502 1.1104 -2.4455 16 8 5.6154 1.0013 -1.2014 17 6 4.5930 3.2839 -1.7327 18 6 5.8748 3.8072 -1.7437 19 6 6.0339 5.1636 -1.9869 20 6 4.9161 5.9464 -2.2089 21 17 5.1054 7.6450 -2.5135 22 7 3.7064 5.4178 -2.1920 23 6 3.5157 4.1288 -1.9635 24 8 2.2550 3.6274 -1.9547 25 6 1.1891 4.5476 -2.1983 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9565 -0.8899 33 1 3.6910 0.6802 1.9444 34 1 5.2262 0.9122 1.0741 35 1 6.0079 1.8949 4.5362 36 1 6.7315 3.1738 -1.5666 37 1 7.0202 5.6035 -2.0028 38 1 0.2370 4.0184 -2.1630 39 1 1.2001 5.3264 -1.4357 40 1 1.3174 5.0002 -3.1816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198680597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:44 Heat of formation + Delta-G solvation = -82.304193 kcal Electronic energy + Delta-G solvation = -27963.745865 eV Core-core repulsion = 23932.265277 eV Total energy + Delta-G solvation = -4031.480587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.074 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76918 -38.26182 -36.82192 -36.59793 -36.31259 -35.27825 -33.16984 -32.77470 -31.80635 -30.84170 -27.47097 -27.34219 -25.02280 -24.13304 -23.32133 -22.48276 -20.97149 -18.94276 -18.50797 -17.71550 -17.01366 -16.88500 -16.33543 -16.11744 -15.69763 -15.36274 -14.66890 -14.50911 -14.24693 -14.11438 -13.78847 -13.61328 -13.41770 -13.05336 -12.51995 -12.24142 -12.12348 -11.98662 -11.74733 -11.63746 -11.56020 -11.46951 -11.33847 -11.14227 -11.09403 -11.08022 -10.95768 -10.82550 -10.47196 -10.28029 -10.16187 -10.00774 -9.85172 -9.77407 -8.80864 -8.52289 -8.05597 -6.14363 -4.20892 0.46400 1.02874 1.12427 1.50186 2.84953 3.22795 3.26749 3.28613 3.30895 3.63485 4.22467 4.26188 4.33679 4.52244 4.84277 5.12995 5.19027 5.19763 5.24671 5.26645 5.41300 5.44647 5.56007 5.59087 5.63137 5.72062 5.84432 6.12688 6.18212 6.22082 6.28560 6.38084 6.73333 6.75275 6.89688 7.31670 7.34936 7.40024 7.61547 7.82400 8.11543 8.83043 9.45271 10.93408 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.008153 B = 0.006243 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.496515 B = 4484.020679 C = 6191.651235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C 0.129 3.871 4 N -0.973 5.973 5 C 0.244 3.756 6 C -0.541 4.541 7 H 0.057 0.943 8 C 0.068 3.932 9 N -0.887 5.887 10 Si 0.889 3.111 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.276 1.276 14 S 2.699 3.301 15 O -0.961 6.961 16 O -0.956 6.956 17 C -0.731 4.731 18 C 0.076 3.924 19 C -0.212 4.212 20 C 0.257 3.743 21 Cl -0.025 7.025 22 N -0.550 5.550 23 C 0.432 3.568 24 O -0.290 6.290 25 C 0.036 3.964 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.266 0.734 36 H 0.171 0.829 37 H 0.156 0.844 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.111 5.431 -11.159 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.184 4.184 3 C 0.003 3.997 4 N -0.813 5.813 5 C 0.122 3.878 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.135 4.135 9 N -0.525 5.525 10 Si 0.716 3.284 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.202 1.202 14 S 2.784 3.216 15 O -0.951 6.951 16 O -0.947 6.947 17 C -0.816 4.816 18 C 0.050 3.950 19 C -0.234 4.234 20 C 0.093 3.907 21 Cl 0.003 6.997 22 N -0.277 5.277 23 C 0.252 3.748 24 O -0.195 6.195 25 C -0.059 4.059 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.189 0.811 37 H 0.173 0.827 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.559 5.149 -11.643 13.891 hybrid contribution 0.656 1.920 0.916 2.227 sum -4.903 7.069 -10.727 13.750 Atomic orbital electron populations 1.21670 0.95839 1.01288 1.01558 1.21983 0.95522 0.98264 1.02655 1.21296 0.79213 0.96187 1.03051 1.57330 1.14102 1.86550 1.23269 1.19270 0.92324 0.97427 0.78789 1.21475 1.36724 0.93650 1.06208 0.92484 1.24898 0.95158 0.96685 0.96806 1.69911 1.36598 1.28900 1.17123 0.86709 0.78366 0.84562 0.78748 1.20212 1.20989 1.20174 1.01918 0.73427 0.73137 0.73109 1.93541 1.65912 1.78538 1.57143 1.93545 1.40767 1.74807 1.85550 1.31386 0.97690 1.30123 1.22408 1.21299 0.95675 0.94433 0.83585 1.21750 0.99366 0.94256 1.08061 1.21442 0.89294 0.87222 0.92738 1.98415 1.96801 1.11135 1.93302 1.66518 1.25623 1.12852 1.22692 1.18675 0.85083 0.86098 0.84980 1.86352 1.11856 1.37171 1.84142 1.23016 0.87234 0.93496 1.02110 0.92737 0.92858 0.92989 0.91754 0.91356 0.90369 0.90206 0.93773 0.92859 0.92469 0.81120 0.82662 0.87727 0.91628 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.14 -2.27 6.26 -26.73 -0.17 -2.44 16 3 C 0.13 2.25 5.15 -4.04 -0.02 2.23 16 4 N -0.97 -19.95 2.77 -115.66 -0.32 -20.27 16 5 C 0.24 5.89 5.43 -5.20 -0.03 5.87 16 6 C -0.54 -14.08 9.38 -34.44 -0.32 -14.41 16 7 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -24.89 13.29 55.43 0.74 -24.16 16 10 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 14 S 2.70 53.95 5.25 -107.50 -0.56 53.38 16 15 O -0.96 -19.43 16.29 -62.35 -1.02 -20.45 16 16 O -0.96 -21.00 15.60 -57.17 -0.89 -21.89 16 17 C -0.73 -13.40 5.94 -39.27 -0.23 -13.63 16 18 C 0.08 1.24 9.66 -39.32 -0.38 0.86 16 19 C -0.21 -3.02 9.87 -39.39 -0.39 -3.41 16 20 C 0.26 3.87 7.27 -17.46 -0.13 3.75 16 21 Cl -0.03 -0.31 29.11 -51.86 -1.51 -1.82 16 22 N -0.55 -9.04 9.19 -10.44 -0.10 -9.14 16 23 C 0.43 7.57 7.44 -17.13 -0.13 7.45 16 24 O -0.29 -4.64 6.52 -27.95 -0.18 -4.82 16 25 C 0.04 0.42 10.38 101.05 1.05 1.47 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 32 H 0.08 1.30 4.89 -51.93 -0.25 1.05 16 33 H 0.04 1.10 8.11 -51.93 -0.42 0.68 16 34 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.17 2.49 7.43 -52.49 -0.39 2.10 16 37 H 0.16 1.67 8.06 -52.48 -0.42 1.24 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -31.21 365.72 -9.02 -40.23 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.19 Total: -0.35 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -0.48 Total: -11.99 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.32 Total: -53.57 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -2.09 Total: -47.16 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 53.95 SS G_CDS: -0.56 Total: 53.38 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.51 Total: -1.82 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.21 -9.02 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198680597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.076 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds