Wall clock time and date at job start Wed Apr 1 2020 04:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47003 * 2 1 4 4 N 1.46503 * 109.46970 * 180.02562 * 3 2 1 5 5 C 1.46502 * 120.00012 * 275.00106 * 4 3 2 6 6 C 1.50689 * 109.47312 * 275.00079 * 5 4 3 7 7 H 1.08003 * 120.00153 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99477 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00433 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46909 * 60.00345 * 10 8 6 12 12 H 1.48495 * 109.46979 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47052 * 300.00408 * 10 8 6 14 14 S 1.65598 * 119.99810 * 95.00201 * 4 3 2 15 15 O 1.42101 * 106.40288 * 336.46306 * 14 4 3 16 16 O 1.42098 * 106.40155 * 203.53732 * 14 4 3 17 17 C 1.76202 * 107.21615 * 89.99997 * 14 4 3 18 18 C 1.38464 * 120.42572 * 114.99834 * 17 14 4 19 19 C 1.38718 * 118.49967 * 179.97438 * 18 17 14 20 20 C 1.38265 * 119.27715 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 119.60263 * 179.97438 * 20 19 18 22 22 N 1.32024 * 120.79821 * 359.97438 * 20 19 18 23 23 C 1.32292 * 121.63324 * 0.02582 * 22 20 19 24 24 O 1.35676 * 119.68109 * 179.97438 * 23 22 20 25 25 C 1.42905 * 116.99822 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47164 * 299.99722 * 1 2 3 27 27 H 1.09004 * 109.46975 * 59.99607 * 1 2 3 28 28 H 1.08996 * 109.47384 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46877 * 240.00949 * 2 1 3 30 30 H 1.08991 * 109.47533 * 120.00180 * 2 1 3 31 31 H 1.09000 * 109.46934 * 60.00136 * 3 2 1 32 32 H 1.08997 * 109.47788 * 300.00354 * 3 2 1 33 33 H 1.08997 * 109.46921 * 35.00719 * 5 4 3 34 34 H 1.09004 * 109.46872 * 154.99839 * 5 4 3 35 35 H 0.97002 * 120.00222 * 179.97438 * 9 8 6 36 36 H 1.07997 * 120.75243 * 359.95900 * 18 17 14 37 37 H 1.08003 * 120.36768 * 180.02562 * 19 18 17 38 38 H 1.08992 * 109.47418 * 180.02562 * 25 24 23 39 39 H 1.09004 * 109.46917 * 300.00653 * 25 24 23 40 40 H 1.09002 * 109.47052 * 60.00347 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.3317 1.2630 6 6 4.3822 2.6982 1.8816 7 1 3.9695 3.5629 1.3831 8 6 5.0411 2.8448 3.0839 9 7 5.5441 1.7919 3.6905 10 14 5.2204 4.5388 3.8504 11 1 3.8744 5.1110 4.1069 12 1 5.9634 4.4264 5.1312 13 1 5.9666 5.4256 2.9220 14 16 4.3323 1.5678 -1.4296 15 8 3.4502 1.1104 -2.4455 16 8 5.6154 1.0013 -1.2014 17 6 4.5930 3.2839 -1.7327 18 6 5.8748 3.8072 -1.7437 19 6 6.0339 5.1636 -1.9869 20 6 4.9161 5.9464 -2.2089 21 17 5.1054 7.6450 -2.5135 22 7 3.7064 5.4178 -2.1920 23 6 3.5157 4.1288 -1.9635 24 8 2.2550 3.6274 -1.9547 25 6 1.1891 4.5476 -2.1983 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9565 -0.8899 33 1 3.6910 0.6802 1.9444 34 1 5.2262 0.9122 1.0741 35 1 6.0079 1.8949 4.5362 36 1 6.7315 3.1738 -1.5666 37 1 7.0202 5.6035 -2.0028 38 1 0.2370 4.0184 -2.1630 39 1 1.2001 5.3264 -1.4357 40 1 1.3174 5.0002 -3.1816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198680597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:44 Heat of formation + Delta-G solvation = -103.673376 kcal Electronic energy + Delta-G solvation = -27964.672502 eV Core-core repulsion = 23932.265277 eV Total energy + Delta-G solvation = -4032.407225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.074 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.97220 -39.43319 -38.26904 -37.91050 -37.82449 -36.91220 -34.97251 -34.01493 -33.38089 -32.02960 -29.23079 -28.39336 -26.53273 -25.41020 -24.55107 -24.24068 -22.30915 -20.31419 -19.83693 -19.06883 -18.63802 -18.36041 -18.13476 -17.36851 -17.14087 -16.73873 -16.29336 -15.84886 -15.50443 -15.31640 -15.16979 -14.97918 -14.79695 -14.39005 -14.16453 -13.80432 -13.34981 -13.25334 -13.16784 -13.10698 -13.00947 -12.95636 -12.80120 -12.64627 -12.46621 -12.42419 -12.30212 -12.16323 -12.13521 -12.00361 -11.66901 -11.40624 -11.34495 -11.15243 -10.58420 -10.02888 -9.71929 -8.18415 -6.31648 -0.82489 -0.49042 -0.09305 0.36138 1.39026 1.39433 1.47374 1.72298 1.90370 2.19175 2.39998 2.69537 3.08254 3.12232 3.18949 3.66167 3.82857 3.98355 4.04058 4.23909 4.30786 4.37247 4.37692 4.44507 4.53115 4.61067 4.70992 4.89117 4.95770 4.97800 5.07374 5.24238 5.31970 5.32803 5.50185 5.56429 5.74407 5.74888 5.94485 6.09369 6.12883 6.78636 7.37899 8.89157 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.008153 B = 0.006243 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.496515 B = 4484.020679 C = 6191.651235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.145 4.145 3 C 0.123 3.877 4 N -0.979 5.979 5 C 0.260 3.740 6 C -0.544 4.544 7 H 0.058 0.942 8 C 0.020 3.980 9 N -0.921 5.921 10 Si 0.946 3.054 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.270 1.270 14 S 2.708 3.292 15 O -0.968 6.968 16 O -0.985 6.985 17 C -0.754 4.754 18 C 0.064 3.936 19 C -0.204 4.204 20 C 0.249 3.751 21 Cl 0.003 6.997 22 N -0.553 5.553 23 C 0.424 3.576 24 O -0.304 6.304 25 C 0.027 3.973 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.029 0.971 34 H 0.027 0.973 35 H 0.267 0.733 36 H 0.179 0.821 37 H 0.192 0.808 38 H 0.136 0.864 39 H 0.064 0.936 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.892 7.603 -11.734 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.185 4.185 3 C -0.002 4.002 4 N -0.818 5.818 5 C 0.136 3.864 6 C -0.583 4.583 7 H 0.076 0.924 8 C -0.180 4.180 9 N -0.560 5.560 10 Si 0.772 3.228 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.195 1.195 14 S 2.797 3.203 15 O -0.958 6.958 16 O -0.975 6.975 17 C -0.843 4.843 18 C 0.038 3.962 19 C -0.226 4.226 20 C 0.085 3.915 21 Cl 0.032 6.968 22 N -0.281 5.281 23 C 0.243 3.757 24 O -0.209 6.209 25 C -0.066 4.066 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.197 0.803 37 H 0.210 0.790 38 H 0.154 0.846 39 H 0.083 0.917 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.375 7.293 -12.229 15.601 hybrid contribution 0.879 1.345 1.000 1.893 sum -5.496 8.639 -11.229 15.196 Atomic orbital electron populations 1.21646 0.92967 1.02633 1.02548 1.21986 0.98060 0.96786 1.01660 1.21519 0.77554 0.97553 1.03548 1.57241 1.15294 1.87210 1.22019 1.18812 0.91230 0.96389 0.79945 1.21698 1.36196 0.94183 1.06201 0.92424 1.25652 0.94973 1.00017 0.97378 1.70024 1.37538 1.30874 1.17598 0.85786 0.78559 0.80477 0.78026 1.19551 1.20609 1.19474 1.01328 0.72639 0.73705 0.72664 1.93518 1.65938 1.79411 1.56960 1.93502 1.41994 1.76210 1.85841 1.31089 0.99275 1.28835 1.25094 1.21583 0.95253 0.95755 0.83650 1.22120 1.00887 0.93212 1.06365 1.21869 0.89231 0.88602 0.91800 1.98426 1.96673 1.08789 1.92960 1.66619 1.26319 1.12240 1.22927 1.18770 0.85500 0.86400 0.85020 1.86325 1.12054 1.38569 1.83957 1.23363 0.87167 0.93661 1.02452 0.92040 0.91560 0.91523 0.92532 0.92612 0.90682 0.88747 0.95257 0.95505 0.92378 0.80324 0.79048 0.84613 0.91692 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.15 -4.57 6.26 30.60 0.19 -4.37 16 3 C 0.12 4.32 5.15 86.38 0.44 4.76 16 4 N -0.98 -41.03 2.77 -519.85 -1.44 -42.47 16 5 C 0.26 12.98 5.43 85.63 0.47 13.44 16 6 C -0.54 -28.55 9.38 25.60 0.24 -28.31 16 7 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 8 C 0.02 1.08 5.46 84.66 0.46 1.54 16 9 N -0.92 -52.42 13.29 21.45 0.28 -52.13 16 10 Si 0.95 42.11 29.54 68.60 2.03 44.14 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 S 2.71 110.36 5.25 -56.49 -0.30 110.06 16 15 O -0.97 -39.47 16.29 -123.05 -2.00 -41.47 16 16 O -0.98 -44.77 15.60 -128.00 -2.00 -46.76 16 17 C -0.75 -27.51 5.94 22.47 0.13 -27.37 16 18 C 0.06 2.02 9.66 22.44 0.22 2.24 16 19 C -0.20 -5.36 9.87 22.39 0.22 -5.14 16 20 C 0.25 6.95 7.27 84.67 0.62 7.56 16 21 Cl 0.00 0.06 29.11 -2.72 -0.08 -0.02 16 22 N -0.55 -17.28 9.19 -299.78 -2.76 -20.04 16 23 C 0.42 14.48 7.44 84.77 0.63 15.12 16 24 O -0.30 -9.39 6.52 -81.12 -0.53 -9.92 16 25 C 0.03 0.58 10.38 113.37 1.18 1.76 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.65 8.11 -2.39 -0.02 2.63 16 32 H 0.09 3.02 4.89 -2.39 -0.01 3.01 16 33 H 0.03 1.53 8.11 -2.39 -0.02 1.51 16 34 H 0.03 1.48 6.91 -2.39 -0.02 1.46 16 35 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 36 H 0.18 5.19 7.43 -2.91 -0.02 5.17 16 37 H 0.19 3.46 8.06 -2.91 -0.02 3.43 16 38 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 1.40 8.10 -2.38 -0.02 1.38 16 40 H 0.07 1.40 8.10 -2.39 -0.02 1.39 16 Total: -1.00 -66.97 365.72 -0.22 -67.19 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.06 Total: 12.75 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 5.51 Total: -21.31 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -3.91 Total: -114.64 kcal Atomic # 8 Polarization: -93.63 SS G_CDS: -4.53 Total: -98.16 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: 110.36 SS G_CDS: -0.30 Total: 110.06 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.08 Total: -0.02 kcal Total: -66.97 -0.22 -67.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198680597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.483 kcal (2) G-P(sol) polarization free energy of solvation -66.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds