Wall clock time and date at job start Wed Apr 1 2020 05:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47306 * 135.87194 * 359.63632 * 13 11 10 15 15 C 1.51987 * 87.69939 * 206.04920 * 14 13 11 16 16 C 1.47312 * 135.86724 * 179.97438 * 13 11 10 17 17 C 1.52678 * 122.01457 * 100.05232 * 15 14 13 18 18 N 1.47846 * 85.64468 * 104.38457 * 17 15 14 19 19 C 1.34774 * 134.33235 * 203.63935 * 18 17 15 20 20 O 1.21279 * 119.99914 * 180.02562 * 19 18 17 21 21 C 1.50697 * 120.00011 * 0.02562 * 19 18 17 22 22 H 1.08997 * 109.47376 * 344.98958 * 21 19 18 23 23 Cl 1.80302 * 109.47520 * 104.99741 * 21 19 18 24 24 C 1.53010 * 109.46786 * 224.99298 * 21 19 18 25 25 Cl 1.80304 * 109.46810 * 179.97438 * 24 21 19 26 26 C 1.47841 * 91.33202 * 23.64614 * 18 17 15 27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.08996 * 113.53123 * 320.68742 * 14 13 11 33 33 H 1.09007 * 113.53393 * 91.32662 * 14 13 11 34 34 H 1.08998 * 113.53198 * 268.67925 * 16 13 11 35 35 H 1.08998 * 113.53190 * 39.31311 * 16 13 11 36 36 H 1.08994 * 113.83864 * 218.56839 * 17 15 14 37 37 H 1.08994 * 113.84316 * 350.20264 * 17 15 14 38 38 H 1.08989 * 109.47215 * 299.99874 * 24 21 19 39 39 H 1.09004 * 109.46434 * 60.00538 * 24 21 19 40 40 H 1.09001 * 113.84574 * 222.17205 * 26 18 17 41 41 H 1.08998 * 113.95952 * 90.54439 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 3.5823 -6.5373 -0.0068 15 6 3.1464 -7.8352 -0.6668 16 6 1.8058 -7.5630 0.0016 17 6 3.2751 -8.0612 -2.1712 18 7 4.4312 -8.9172 -1.8298 19 6 5.5293 -9.3262 -2.4954 20 8 6.3353 -10.0493 -1.9492 21 6 5.7558 -8.8851 -3.9185 22 1 4.8301 -8.4769 -4.3240 23 17 7.0393 -7.6195 -3.9586 24 6 6.1959 -10.0847 -4.7603 25 17 6.4661 -9.5571 -6.4631 26 6 3.9035 -9.1460 -0.4678 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8902 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.2084 -5.9147 -0.6458 33 1 4.0009 -6.6754 0.9902 34 1 1.7229 -7.9903 1.0009 35 1 0.9490 -7.7964 -0.6305 36 1 2.4378 -8.6052 -2.6082 37 1 3.5408 -7.1642 -2.7304 38 1 7.1216 -10.4930 -4.3548 39 1 5.4199 -10.8497 -4.7361 40 1 4.6634 -9.1020 0.3124 41 1 3.2572 -10.0198 -0.3846 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270903163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:59 Heat of formation + Delta-G solvation = -17.835497 kcal Electronic energy + Delta-G solvation = -25369.547361 eV Core-core repulsion = 21338.818640 eV Total energy + Delta-G solvation = -4030.728721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.75000 -39.83207 -38.41167 -36.92512 -36.37331 -36.33253 -33.49793 -32.70150 -31.21368 -30.09556 -27.50863 -27.04326 -26.48223 -25.24332 -24.18466 -21.49054 -20.13778 -19.17218 -18.63430 -17.95753 -17.05141 -16.89822 -16.68263 -15.98662 -15.91017 -15.83761 -15.15414 -14.74630 -14.51042 -14.42228 -14.08762 -13.83564 -13.46129 -13.19000 -13.06110 -12.94001 -12.65284 -12.44887 -12.20112 -12.14797 -11.67279 -11.41110 -11.35147 -11.21969 -10.99812 -10.95247 -10.93690 -10.90905 -10.64597 -10.27680 -10.00742 -9.72598 -9.42310 -9.23765 -9.08318 -8.64377 -8.34703 -5.99071 -4.03779 0.98638 1.43740 2.08901 2.34306 2.85907 3.07748 3.32788 3.37687 3.39344 3.51548 3.61115 3.73326 3.79445 4.06419 4.25671 4.44120 4.47735 4.69038 4.80197 4.85536 4.91624 5.02748 5.05176 5.12236 5.21604 5.24187 5.31872 5.35908 5.47329 5.57830 5.95520 6.16124 6.23215 6.83112 6.94965 7.37108 7.70027 7.80511 7.86494 8.02856 8.33848 8.62174 9.04012 9.59970 11.11815 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.002271 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.423187 B =12328.505106 C =13814.198032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.122 4.122 11 C 0.542 3.458 12 O -0.528 6.528 13 N -0.656 5.656 14 C 0.132 3.868 15 C -0.143 4.143 16 C 0.121 3.879 17 C 0.126 3.874 18 N -0.635 5.635 19 C 0.540 3.460 20 O -0.518 6.518 21 C -0.038 4.038 22 H 0.126 0.874 23 Cl -0.113 7.113 24 C -0.032 4.032 25 Cl -0.153 7.153 26 C 0.132 3.868 27 H 0.262 0.738 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.537 -25.223 -7.179 28.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.162 4.162 11 C 0.334 3.666 12 O -0.402 6.402 13 N -0.395 5.395 14 C 0.008 3.992 15 C -0.145 4.145 16 C -0.002 4.002 17 C 0.004 3.996 18 N -0.371 5.371 19 C 0.327 3.673 20 O -0.393 6.393 21 C -0.086 4.086 22 H 0.144 0.856 23 Cl -0.086 7.086 24 C -0.095 4.095 25 Cl -0.126 7.126 26 C 0.010 3.990 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.111 0.889 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.302 -25.160 -7.129 28.488 hybrid contribution 0.489 1.025 -0.077 1.138 sum 11.790 -24.135 -7.205 27.811 Atomic orbital electron populations 1.69987 1.06060 1.26761 1.50004 1.25021 0.94834 0.99238 0.95233 0.86644 0.79553 0.83113 0.78589 1.20209 1.21255 1.20230 1.21156 0.92882 0.90938 1.51667 0.92654 1.18916 0.93152 0.89328 0.98647 1.21839 1.00678 0.91154 1.02484 1.21299 0.87872 0.83594 0.73814 1.90697 1.14199 1.86445 1.48878 1.49947 1.08277 1.04975 1.76287 1.22460 0.85160 0.91056 1.00526 1.23083 0.98795 0.96172 0.96409 1.22565 0.95629 0.81642 1.00394 1.23027 0.87004 0.94168 0.95434 1.50035 1.20634 1.50172 1.16282 1.19562 0.81004 0.80270 0.86474 1.90782 1.43906 1.36345 1.68291 1.24280 0.96301 0.92735 0.95283 0.85607 1.98797 1.55397 1.55647 1.98775 1.24397 1.06621 0.95715 0.82808 1.98758 1.97561 1.92253 1.24076 1.22960 0.95614 0.96385 0.84009 0.92848 0.95787 0.95815 0.90271 0.90275 0.89715 0.89031 0.89353 0.89967 0.88018 0.88685 0.86328 0.86892 0.88876 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.12 -2.42 5.46 -27.88 -0.15 -2.57 16 11 C 0.54 10.06 8.08 -10.98 -0.09 9.97 16 12 O -0.53 -12.16 16.75 5.56 0.09 -12.07 16 13 N -0.66 -8.39 3.70 -185.30 -0.69 -9.08 16 14 C 0.13 1.13 8.22 -7.65 -0.06 1.07 16 15 C -0.14 -0.92 1.46 -156.05 -0.23 -1.14 16 16 C 0.12 1.04 8.44 -7.52 -0.06 0.98 16 17 C 0.13 0.70 7.97 -3.47 -0.03 0.68 16 18 N -0.64 -4.31 3.61 -185.60 -0.67 -4.98 16 19 C 0.54 4.57 7.06 -10.99 -0.08 4.50 16 20 O -0.52 -6.08 17.24 5.56 0.10 -5.98 16 21 C -0.04 -0.26 3.23 -27.88 -0.09 -0.35 16 22 H 0.13 0.64 7.48 -51.93 -0.39 0.25 16 23 Cl -0.11 -1.03 27.95 -51.86 -1.45 -2.48 16 24 C -0.03 -0.19 5.97 37.16 0.22 0.03 16 25 Cl -0.15 -1.13 28.50 -51.86 -1.48 -2.61 16 26 C 0.13 0.71 8.66 -3.47 -0.03 0.68 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.12 0.76 7.91 -51.94 -0.41 0.35 16 39 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -36.64 382.47 -9.57 -46.21 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -5.83 Total: -6.02 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.13 Total: 1.18 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: -0.62 Total: -40.48 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.19 Total: -18.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -2.93 Total: -5.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.64 -9.57 -46.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270903163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.378 kcal (2) G-P(sol) polarization free energy of solvation -36.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds