Wall clock time and date at job start Wed Apr 1 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47306 * 135.87194 * 359.63632 * 13 11 10 15 15 C 1.51987 * 87.69939 * 206.04920 * 14 13 11 16 16 C 1.47312 * 135.86724 * 179.97438 * 13 11 10 17 17 C 1.52678 * 122.01457 * 100.05232 * 15 14 13 18 18 N 1.47846 * 85.64468 * 104.38457 * 17 15 14 19 19 C 1.34774 * 134.33235 * 203.63935 * 18 17 15 20 20 O 1.21279 * 119.99914 * 180.02562 * 19 18 17 21 21 C 1.50697 * 120.00011 * 0.02562 * 19 18 17 22 22 H 1.08997 * 109.47376 * 344.98958 * 21 19 18 23 23 Cl 1.80302 * 109.47520 * 104.99741 * 21 19 18 24 24 C 1.53010 * 109.46786 * 224.99298 * 21 19 18 25 25 Cl 1.80304 * 109.46810 * 179.97438 * 24 21 19 26 26 C 1.47841 * 91.33202 * 23.64614 * 18 17 15 27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.08996 * 113.53123 * 320.68742 * 14 13 11 33 33 H 1.09007 * 113.53393 * 91.32662 * 14 13 11 34 34 H 1.08998 * 113.53198 * 268.67925 * 16 13 11 35 35 H 1.08998 * 113.53190 * 39.31311 * 16 13 11 36 36 H 1.08994 * 113.83864 * 218.56839 * 17 15 14 37 37 H 1.08994 * 113.84316 * 350.20264 * 17 15 14 38 38 H 1.08989 * 109.47215 * 299.99874 * 24 21 19 39 39 H 1.09004 * 109.46434 * 60.00538 * 24 21 19 40 40 H 1.09001 * 113.84574 * 222.17205 * 26 18 17 41 41 H 1.08998 * 113.95952 * 90.54439 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 3.5823 -6.5373 -0.0068 15 6 3.1464 -7.8352 -0.6668 16 6 1.8058 -7.5630 0.0016 17 6 3.2751 -8.0612 -2.1712 18 7 4.4312 -8.9172 -1.8298 19 6 5.5293 -9.3262 -2.4954 20 8 6.3353 -10.0493 -1.9492 21 6 5.7558 -8.8851 -3.9185 22 1 4.8301 -8.4769 -4.3240 23 17 7.0393 -7.6195 -3.9586 24 6 6.1959 -10.0847 -4.7603 25 17 6.4661 -9.5571 -6.4631 26 6 3.9035 -9.1460 -0.4678 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8902 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.2084 -5.9147 -0.6458 33 1 4.0009 -6.6754 0.9902 34 1 1.7229 -7.9903 1.0009 35 1 0.9490 -7.7964 -0.6305 36 1 2.4378 -8.6052 -2.6082 37 1 3.5408 -7.1642 -2.7304 38 1 7.1216 -10.4930 -4.3548 39 1 5.4199 -10.8497 -4.7361 40 1 4.6634 -9.1020 0.3124 41 1 3.2572 -10.0198 -0.3846 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270903163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:58 Heat of formation + Delta-G solvation = -42.519200 kcal Electronic energy + Delta-G solvation = -25370.617726 eV Core-core repulsion = 21338.818640 eV Total energy + Delta-G solvation = -4031.799087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.43622 -40.69227 -39.57705 -37.54204 -37.19907 -36.93577 -35.57096 -33.29493 -33.05493 -31.05247 -28.66355 -27.50021 -27.32937 -26.80118 -24.83450 -23.28612 -20.95753 -20.08872 -19.38968 -18.76249 -18.52108 -17.62007 -17.46388 -17.32250 -16.87220 -16.69552 -16.43367 -16.07146 -15.71346 -15.45873 -14.74362 -14.50973 -14.35577 -14.16110 -14.04197 -13.83444 -13.77097 -13.50021 -13.38015 -13.14396 -13.07636 -12.78893 -12.51885 -12.33768 -12.03231 -11.94930 -11.92152 -11.68635 -11.61143 -11.52371 -11.48263 -11.32937 -10.96631 -10.69171 -10.56574 -9.96412 -9.66797 -8.18605 -6.32666 0.39158 0.93222 1.41786 1.45904 1.53670 1.55435 1.66691 1.77024 1.84956 2.42408 2.94752 3.10863 3.13695 3.14280 3.19627 3.59865 3.62477 3.78305 4.07654 4.20058 4.34746 4.41215 4.43133 4.49029 4.51159 4.56137 4.58003 4.63049 4.67298 4.67949 4.88270 4.90925 4.96532 5.15021 5.48455 5.61606 5.83959 6.16577 6.38523 6.67362 6.76737 6.86206 7.24046 7.37672 8.93774 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.002271 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.423187 B =12328.505106 C =13814.198032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.043 3.957 10 C -0.111 4.111 11 C 0.541 3.459 12 O -0.589 6.589 13 N -0.656 5.656 14 C 0.124 3.876 15 C -0.124 4.124 16 C 0.120 3.880 17 C 0.124 3.876 18 N -0.634 5.634 19 C 0.541 3.459 20 O -0.555 6.555 21 C -0.033 4.033 22 H 0.146 0.854 23 Cl -0.136 7.136 24 C -0.027 4.027 25 Cl -0.167 7.167 26 C 0.138 3.862 27 H 0.263 0.737 28 H -0.016 1.016 29 H -0.018 1.018 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.137 0.863 40 H 0.096 0.904 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.345 -26.447 -7.254 30.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.092 0.908 9 C 0.006 3.994 10 C -0.151 4.151 11 C 0.333 3.667 12 O -0.469 6.469 13 N -0.392 5.392 14 C 0.003 3.997 15 C -0.126 4.126 16 C -0.002 4.002 17 C 0.003 3.997 18 N -0.369 5.369 19 C 0.328 3.672 20 O -0.433 6.433 21 C -0.081 4.081 22 H 0.164 0.836 23 Cl -0.109 7.109 24 C -0.090 4.090 25 Cl -0.140 7.140 26 C 0.017 3.983 27 H 0.072 0.928 28 H 0.002 0.998 29 H 0.000 1.000 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.130 0.870 39 H 0.155 0.845 40 H 0.114 0.886 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.164 -26.438 -7.202 30.399 hybrid contribution -0.091 1.291 -0.016 1.295 sum 13.073 -25.146 -7.218 29.246 Atomic orbital electron populations 1.70166 1.08239 1.27895 1.51329 1.26113 0.95722 1.03846 0.94612 0.85402 0.78103 0.77470 0.79461 1.18717 1.21256 1.18766 1.21655 0.93887 0.91639 1.50986 0.90823 1.18681 0.93655 0.92338 0.94750 1.21542 0.99195 0.90076 1.04245 1.20789 0.86938 0.84930 0.74020 1.90667 1.16475 1.87552 1.52195 1.49776 1.10687 1.05230 1.73482 1.22830 0.82770 0.91908 1.02236 1.22818 0.96990 0.95866 0.96902 1.22875 0.96848 0.78477 1.02042 1.23246 0.87224 0.94386 0.94875 1.50085 1.20375 1.49588 1.16835 1.19689 0.80868 0.79816 0.86801 1.90771 1.45190 1.38177 1.69191 1.24423 0.96314 0.92497 0.94822 0.83622 1.98796 1.56618 1.56749 1.98783 1.24466 1.07176 0.95731 0.81633 1.98760 1.97644 1.92414 1.25169 1.23109 0.95597 0.96245 0.83364 0.92805 0.99779 0.99963 0.88465 0.88308 0.89498 0.86902 0.87209 0.89959 0.85528 0.88774 0.86966 0.84519 0.88612 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.13 13.29 21.45 0.28 -58.85 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 3 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.04 2.40 4.26 29.85 0.13 2.53 16 10 C -0.11 -4.42 5.46 29.85 0.16 -4.26 16 11 C 0.54 20.29 8.08 87.66 0.71 21.00 16 12 O -0.59 -28.37 16.75 -3.03 -0.05 -28.42 16 13 N -0.66 -15.70 3.70 -858.56 -3.17 -18.87 16 14 C 0.12 1.78 8.22 83.60 0.69 2.47 16 15 C -0.12 -1.17 1.46 -52.87 -0.08 -1.25 16 16 C 0.12 1.73 8.44 83.69 0.71 2.44 16 17 C 0.12 0.96 7.97 86.01 0.69 1.65 16 18 N -0.63 -6.54 3.61 -859.50 -3.11 -9.65 16 19 C 0.54 7.90 7.06 87.66 0.62 8.52 16 20 O -0.55 -12.09 17.24 -3.03 -0.05 -12.14 16 21 C -0.03 -0.39 3.23 29.85 0.10 -0.29 16 22 H 0.15 1.09 7.48 -2.39 -0.02 1.07 16 23 Cl -0.14 -2.33 27.95 -2.72 -0.08 -2.41 16 24 C -0.03 -0.27 5.97 71.99 0.43 0.16 16 25 Cl -0.17 -2.24 28.50 -2.72 -0.08 -2.32 16 26 C 0.14 0.95 8.66 86.01 0.75 1.69 16 27 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 28 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 29 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 30 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 31 H 0.10 3.49 8.14 -2.39 -0.02 3.48 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 1.22 8.14 -2.38 -0.02 1.21 16 34 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 1.31 7.91 -2.39 -0.02 1.29 16 39 H 0.14 0.71 8.14 -2.39 -0.02 0.70 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -84.56 382.47 2.40 -82.16 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.04 Total: 0.16 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.59 Total: 4.20 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -6.00 Total: -87.37 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.10 Total: -40.56 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 17 Polarization: -4.58 SS G_CDS: -0.15 Total: -4.73 kcal Total: -84.56 2.40 -82.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270903163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.643 kcal (2) G-P(sol) polarization free energy of solvation -84.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds