Wall clock time and date at job start Wed Apr 1 2020 05:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48497 * 109.47665 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47214 * 300.00299 * 3 2 1 6 6 H 1.48508 * 109.47017 * 60.00041 * 3 2 1 7 7 C 1.37873 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00331 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.53502 * 114.20569 * 179.97438 * 9 7 2 11 11 N 1.47064 * 87.98323 * 220.15047 * 10 9 7 12 12 C 1.34776 * 136.05445 * 207.08832 * 11 10 9 13 13 O 1.21287 * 120.00413 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99834 * 180.02562 * 12 11 10 15 15 H 1.08997 * 115.59183 * 325.81812 * 14 12 11 16 16 C 1.53214 * 117.52621 * 111.64798 * 14 12 11 17 17 C 1.52093 * 59.75649 * 107.41729 * 16 14 12 18 18 C 1.52615 * 129.80467 * 119.07411 * 17 16 14 19 19 N 1.47248 * 87.69582 * 113.63173 * 18 17 16 20 20 C 1.34777 * 135.89719 * 206.26392 * 19 18 17 21 21 O 1.21283 * 120.00463 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99675 * 179.72695 * 20 19 18 23 23 F 1.39903 * 109.47174 * 300.27796 * 22 20 19 24 24 F 1.39898 * 109.47270 * 60.27681 * 22 20 19 25 25 Cl 1.80308 * 109.47132 * 180.28030 * 22 20 19 26 26 C 1.47241 * 88.20099 * 26.52562 * 19 18 17 27 27 C 1.47067 * 87.88506 * 27.34418 * 11 10 9 28 28 H 0.97000 * 120.00162 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.28377 * 313.06536 * 9 7 2 30 30 H 1.08998 * 113.46615 * 105.36976 * 10 9 7 31 31 H 1.08994 * 113.46970 * 334.93273 * 10 9 7 32 32 H 1.08997 * 117.51821 * 359.97438 * 16 14 12 33 33 H 1.08993 * 117.56555 * 214.81497 * 16 14 12 34 34 H 1.09000 * 113.51795 * 358.92087 * 18 17 16 35 35 H 1.09006 * 113.51519 * 228.33903 * 18 17 16 36 36 H 1.09002 * 113.52026 * 88.18184 * 26 19 18 37 37 H 1.09002 * 113.51891 * 218.77564 * 26 19 18 38 38 H 1.08993 * 113.46444 * 87.44218 * 27 11 10 39 39 H 1.09006 * 113.46197 * 217.87478 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.1489 -3.7442 0.0016 11 7 1.2067 -4.3597 -0.9451 12 6 0.8311 -5.6145 -1.2629 13 8 1.3283 -6.5602 -0.6890 14 6 -0.2060 -5.8425 -2.3323 15 1 -0.9899 -5.0879 -2.3964 16 6 0.2559 -6.4964 -3.6386 17 6 -0.5878 -7.2809 -2.6457 18 6 -1.9674 -7.9101 -2.8187 19 7 -1.3207 -9.2248 -2.6720 20 6 -1.5827 -10.4830 -3.0781 21 8 -2.5738 -10.7133 -3.7381 22 6 -0.6405 -11.6026 -2.7178 23 9 0.6283 -11.3308 -3.2406 24 9 -0.5574 -11.7123 -1.3256 25 17 -1.2555 -13.1510 -3.4071 26 6 -0.2666 -8.5664 -1.8825 27 6 0.8595 -3.0039 -1.3968 28 1 -0.4850 0.8400 0.0004 29 1 0.4438 -2.5300 0.7335 30 1 2.1886 -4.2508 0.9658 31 1 3.1370 -3.5668 -0.4229 32 1 1.3098 -6.7610 -3.7242 33 1 -0.2241 -6.1725 -4.5620 34 1 -2.3998 -7.7458 -3.8056 35 1 -2.6583 -7.6726 -2.0096 36 1 -0.4927 -8.5081 -0.8178 37 1 0.7325 -8.9542 -2.0818 38 1 1.5077 -2.6314 -2.1900 39 1 -0.1994 -2.8799 -1.6240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272024974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:11 Heat of formation + Delta-G solvation = -48.430008 kcal Electronic energy + Delta-G solvation = -27792.276624 eV Core-core repulsion = 23208.424545 eV Total energy + Delta-G solvation = -4583.852079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.90209 -48.11011 -41.18102 -39.67269 -38.77079 -37.20069 -36.94560 -34.83634 -32.77462 -30.10514 -29.32210 -27.08642 -26.42744 -25.66260 -25.07996 -23.37954 -21.34865 -20.37929 -19.29190 -18.74571 -18.59008 -18.28082 -18.13808 -17.03534 -16.66892 -16.52825 -16.22077 -15.32132 -15.04456 -14.87238 -14.75828 -14.60499 -14.40106 -14.38283 -14.15349 -13.70325 -13.31205 -13.24629 -13.06450 -12.54170 -12.40587 -12.07138 -12.03871 -11.88146 -11.63121 -11.45644 -11.20706 -11.03524 -10.94224 -10.86816 -10.81964 -10.43720 -10.25744 -9.72993 -9.35847 -9.31070 -9.09072 -8.67211 -8.00292 -6.26672 -4.32356 0.29120 1.46678 1.83399 2.67338 2.81537 3.17233 3.20341 3.27245 3.30315 3.31758 3.60087 3.78992 3.90780 4.21829 4.27969 4.58093 4.71100 4.95035 4.99447 5.05305 5.08883 5.20047 5.28032 5.42975 5.50868 5.53579 5.74660 5.94987 6.06305 6.14481 6.33977 6.46036 6.53396 6.69998 6.86714 7.08442 7.46291 7.71239 8.08637 8.36344 8.59653 8.72278 9.35169 10.83048 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.034786 B = 0.001944 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.719157 B =14399.851965 C =14744.707922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.035 3.965 10 C 0.100 3.900 11 N -0.636 5.636 12 C 0.559 3.441 13 O -0.563 6.563 14 C -0.141 4.141 15 H 0.132 0.868 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.154 3.846 19 N -0.627 5.627 20 C 0.522 3.478 21 O -0.480 6.480 22 C 0.344 3.656 23 F -0.151 7.151 24 F -0.151 7.151 25 Cl -0.082 7.082 26 C 0.148 3.852 27 C 0.098 3.902 28 H 0.264 0.736 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 -17.503 -7.394 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.015 3.985 10 C -0.021 4.021 11 N -0.368 5.368 12 C 0.347 3.653 13 O -0.444 6.444 14 C -0.162 4.162 15 H 0.149 0.851 16 C -0.144 4.144 17 C -0.160 4.160 18 C 0.034 3.966 19 N -0.362 5.362 20 C 0.303 3.697 21 O -0.353 6.353 22 C 0.279 3.721 23 F -0.132 7.132 24 F -0.132 7.132 25 Cl -0.057 7.057 26 C 0.026 3.974 27 C -0.024 4.024 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.646 -18.540 -7.602 20.367 hybrid contribution 0.603 0.820 0.082 1.021 sum -3.044 -17.720 -7.519 19.489 Atomic orbital electron populations 1.69948 1.06079 1.27125 1.49068 1.25028 0.94877 0.99462 0.94166 0.86479 0.80209 0.83254 0.77757 1.19537 1.20870 1.20854 1.20941 0.93073 0.89499 1.52053 0.91748 1.20399 0.94748 0.91165 0.92139 1.23375 0.94284 0.93058 0.91419 1.49936 1.42126 1.04775 1.40011 1.18950 0.82333 0.81419 0.82549 1.90635 1.58111 1.40989 1.54663 1.22083 1.01441 0.94934 0.97786 0.85062 1.22812 1.00387 0.98741 0.92461 1.21895 0.97441 0.92152 1.04552 1.22562 0.94052 0.76256 1.03767 1.49458 1.29443 1.05161 1.52091 1.19317 0.86240 0.81576 0.82533 1.90868 1.26124 1.80748 1.37576 1.23961 0.81881 0.89571 0.76723 1.93209 1.40746 1.93156 1.86132 1.93212 1.96196 1.95809 1.28018 1.98885 1.87977 1.33456 1.85339 1.22722 0.91757 0.86500 0.96382 1.23705 0.99877 0.76633 1.02224 0.92626 0.91305 0.92357 0.90766 0.87469 0.86894 0.89006 0.87780 0.87278 0.89110 0.90617 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.01 13.26 55.43 0.74 -22.27 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 19.26 29.54 -169.99 -5.02 14.23 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -12.47 8.83 -34.44 -0.30 -12.77 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.03 0.75 3.79 -91.12 -0.35 0.41 16 10 C 0.10 1.93 8.17 -8.51 -0.07 1.86 16 11 N -0.64 -11.55 3.69 -185.07 -0.68 -12.23 16 12 C 0.56 9.34 7.86 -10.99 -0.09 9.25 16 13 O -0.56 -10.65 16.09 5.55 0.09 -10.56 16 14 C -0.14 -1.71 6.02 -92.12 -0.55 -2.26 16 15 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 16 C -0.11 -1.06 10.24 -27.08 -0.28 -1.33 16 17 C -0.16 -1.66 3.15 -155.68 -0.49 -2.15 16 18 C 0.15 1.40 8.62 -7.64 -0.07 1.34 16 19 N -0.63 -6.83 3.69 -184.33 -0.68 -7.51 16 20 C 0.52 6.27 7.55 -10.98 -0.08 6.19 16 21 O -0.48 -6.73 16.78 5.55 0.09 -6.63 16 22 C 0.34 3.79 2.62 36.01 0.09 3.88 16 23 F -0.15 -1.65 17.06 2.25 0.04 -1.62 16 24 F -0.15 -1.65 17.16 2.25 0.04 -1.62 16 25 Cl -0.08 -0.86 28.09 -51.86 -1.46 -2.32 16 26 C 0.15 1.64 6.94 -7.49 -0.05 1.59 16 27 C 0.10 1.85 8.00 -8.38 -0.07 1.79 16 28 H 0.26 6.54 8.31 -40.82 -0.34 6.21 16 29 H 0.07 1.65 8.11 -51.93 -0.42 1.23 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 32 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.11 1.24 8.12 -51.93 -0.42 0.82 16 37 H 0.09 1.04 8.04 -51.93 -0.42 0.63 16 38 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -27.82 367.53 -8.31 -36.13 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.61 Total: -0.53 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -2.40 Total: 9.39 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.63 Total: -42.02 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.18 Total: -17.20 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.08 Total: -3.23 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.23 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.46 Total: -2.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.82 -8.31 -36.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272024974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.295 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds