Wall clock time and date at job start Wed Apr 1 2020 05:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48497 * 109.47665 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47214 * 300.00299 * 3 2 1 6 6 H 1.48508 * 109.47017 * 60.00041 * 3 2 1 7 7 C 1.37873 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00331 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.53502 * 114.20569 * 179.97438 * 9 7 2 11 11 N 1.47064 * 87.98323 * 220.15047 * 10 9 7 12 12 C 1.34776 * 136.05445 * 207.08832 * 11 10 9 13 13 O 1.21287 * 120.00413 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99834 * 180.02562 * 12 11 10 15 15 H 1.08997 * 115.59183 * 325.81812 * 14 12 11 16 16 C 1.53214 * 117.52621 * 111.64798 * 14 12 11 17 17 C 1.52093 * 59.75649 * 107.41729 * 16 14 12 18 18 C 1.52615 * 129.80467 * 119.07411 * 17 16 14 19 19 N 1.47248 * 87.69582 * 113.63173 * 18 17 16 20 20 C 1.34777 * 135.89719 * 206.26392 * 19 18 17 21 21 O 1.21283 * 120.00463 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99675 * 179.72695 * 20 19 18 23 23 F 1.39903 * 109.47174 * 300.27796 * 22 20 19 24 24 F 1.39898 * 109.47270 * 60.27681 * 22 20 19 25 25 Cl 1.80308 * 109.47132 * 180.28030 * 22 20 19 26 26 C 1.47241 * 88.20099 * 26.52562 * 19 18 17 27 27 C 1.47067 * 87.88506 * 27.34418 * 11 10 9 28 28 H 0.97000 * 120.00162 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.28377 * 313.06536 * 9 7 2 30 30 H 1.08998 * 113.46615 * 105.36976 * 10 9 7 31 31 H 1.08994 * 113.46970 * 334.93273 * 10 9 7 32 32 H 1.08997 * 117.51821 * 359.97438 * 16 14 12 33 33 H 1.08993 * 117.56555 * 214.81497 * 16 14 12 34 34 H 1.09000 * 113.51795 * 358.92087 * 18 17 16 35 35 H 1.09006 * 113.51519 * 228.33903 * 18 17 16 36 36 H 1.09002 * 113.52026 * 88.18184 * 26 19 18 37 37 H 1.09002 * 113.51891 * 218.77564 * 26 19 18 38 38 H 1.08993 * 113.46444 * 87.44218 * 27 11 10 39 39 H 1.09006 * 113.46197 * 217.87478 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.1489 -3.7442 0.0016 11 7 1.2067 -4.3597 -0.9451 12 6 0.8311 -5.6145 -1.2629 13 8 1.3283 -6.5602 -0.6890 14 6 -0.2060 -5.8425 -2.3323 15 1 -0.9899 -5.0879 -2.3964 16 6 0.2559 -6.4964 -3.6386 17 6 -0.5878 -7.2809 -2.6457 18 6 -1.9674 -7.9101 -2.8187 19 7 -1.3207 -9.2248 -2.6720 20 6 -1.5827 -10.4830 -3.0781 21 8 -2.5738 -10.7133 -3.7381 22 6 -0.6405 -11.6026 -2.7178 23 9 0.6283 -11.3308 -3.2406 24 9 -0.5574 -11.7123 -1.3256 25 17 -1.2555 -13.1510 -3.4071 26 6 -0.2666 -8.5664 -1.8825 27 6 0.8595 -3.0039 -1.3968 28 1 -0.4850 0.8400 0.0004 29 1 0.4438 -2.5300 0.7335 30 1 2.1886 -4.2508 0.9658 31 1 3.1370 -3.5668 -0.4229 32 1 1.3098 -6.7610 -3.7242 33 1 -0.2241 -6.1725 -4.5620 34 1 -2.3998 -7.7458 -3.8056 35 1 -2.6583 -7.6726 -2.0096 36 1 -0.4927 -8.5081 -0.8178 37 1 0.7325 -8.9542 -2.0818 38 1 1.5077 -2.6314 -2.1900 39 1 -0.1994 -2.8799 -1.6240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272024974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:10 Heat of formation + Delta-G solvation = -63.554452 kcal Electronic energy + Delta-G solvation = -27792.932469 eV Core-core repulsion = 23208.424545 eV Total energy + Delta-G solvation = -4584.507924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.77528 -48.98276 -42.10659 -40.97141 -39.87844 -38.54002 -37.83244 -35.81460 -34.61478 -31.24676 -30.64237 -28.01311 -27.37583 -27.12563 -26.65009 -24.58085 -22.33526 -21.76760 -20.31089 -19.61747 -19.51114 -19.38140 -19.11620 -18.70442 -17.99738 -17.55830 -17.15443 -16.61158 -16.49111 -16.10327 -15.81371 -15.70832 -15.53178 -15.25680 -15.09308 -14.84250 -14.44981 -14.40470 -14.13197 -13.93864 -13.59898 -13.21438 -13.18446 -13.06213 -12.87879 -12.73451 -12.72708 -12.57034 -12.18555 -12.13065 -11.75325 -11.71246 -11.34478 -11.16512 -11.00621 -10.68351 -10.48576 -10.20378 -9.50878 -8.14721 -6.24730 -0.56303 0.54547 0.96011 1.47391 1.50888 1.52643 1.61514 1.84925 1.98784 2.42227 2.47835 2.68809 2.91481 2.95286 3.16343 3.33704 3.62075 3.78178 3.93326 4.14102 4.30362 4.35933 4.40074 4.44875 4.46733 4.57668 4.61418 4.71882 4.75579 4.78835 4.88141 4.95574 5.03338 5.15399 5.63887 5.85154 5.96887 6.19400 6.26704 6.84163 6.95819 7.20455 7.45380 8.95197 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.034786 B = 0.001944 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.719157 B =14399.851965 C =14744.707922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.286 1.286 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.020 3.980 10 C 0.105 3.895 11 N -0.640 5.640 12 C 0.554 3.446 13 O -0.588 6.588 14 C -0.151 4.151 15 H 0.147 0.853 16 C -0.090 4.090 17 C -0.153 4.153 18 C 0.158 3.842 19 N -0.624 5.624 20 C 0.522 3.478 21 O -0.503 6.503 22 C 0.345 3.655 23 F -0.151 7.151 24 F -0.152 7.152 25 Cl -0.077 7.077 26 C 0.144 3.856 27 C 0.116 3.884 28 H 0.264 0.736 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -17.578 -8.793 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.001 3.999 10 C -0.017 4.017 11 N -0.372 5.372 12 C 0.346 3.654 13 O -0.470 6.470 14 C -0.172 4.172 15 H 0.164 0.836 16 C -0.127 4.127 17 C -0.155 4.155 18 C 0.038 3.962 19 N -0.358 5.358 20 C 0.303 3.697 21 O -0.377 6.377 22 C 0.280 3.720 23 F -0.132 7.132 24 F -0.133 7.133 25 Cl -0.051 7.051 26 C 0.022 3.978 27 C -0.006 4.006 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.162 0.838 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.671 -18.619 -9.001 21.004 hybrid contribution 0.660 0.771 0.587 1.172 sum -3.011 -17.849 -8.414 19.961 Atomic orbital electron populations 1.70043 1.07272 1.27719 1.50485 1.25706 0.95550 1.02358 0.94192 0.85555 0.79262 0.79683 0.77435 1.18933 1.20568 1.21221 1.21241 0.93289 0.90587 1.51264 0.91707 1.20286 0.94619 0.91584 0.93458 1.23207 0.94494 0.92065 0.91940 1.49910 1.42112 1.05223 1.39951 1.19730 0.82553 0.80258 0.82902 1.90623 1.59202 1.41422 1.55769 1.21992 1.00925 0.96535 0.97782 0.83564 1.22986 1.00380 0.96800 0.92506 1.21917 0.98517 0.90709 1.04321 1.22735 0.93417 0.74688 1.05393 1.49502 1.29519 1.05417 1.51409 1.19388 0.86050 0.81912 0.82317 1.90856 1.27027 1.81124 1.38735 1.23868 0.81780 0.89661 0.76716 1.93209 1.40686 1.93189 1.86124 1.93212 1.96194 1.95824 1.28055 1.98886 1.87930 1.33068 1.85262 1.22722 0.91567 0.87131 0.96350 1.23367 1.00183 0.76738 1.00312 0.92686 0.94272 0.92676 0.89965 0.87999 0.83800 0.87262 0.86324 0.87774 0.89725 0.90047 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.95 13.26 21.45 0.28 -47.66 16 2 C 0.02 1.10 5.46 84.65 0.46 1.56 16 3 Si 0.95 39.26 29.54 68.60 2.03 41.29 16 4 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.53 -25.31 8.83 25.60 0.23 -25.09 16 8 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.02 0.87 3.79 -11.12 -0.04 0.83 16 10 C 0.11 4.04 8.17 83.18 0.68 4.72 16 11 N -0.64 -22.74 3.69 -857.83 -3.16 -25.91 16 12 C 0.55 17.92 7.86 87.66 0.69 18.61 16 13 O -0.59 -21.90 16.09 -3.05 -0.05 -21.95 16 14 C -0.15 -3.32 6.02 -11.77 -0.07 -3.39 16 15 H 0.15 2.82 8.14 -2.39 -0.02 2.80 16 16 C -0.09 -1.50 10.24 30.37 0.31 -1.19 16 17 C -0.15 -2.82 3.15 -52.93 -0.17 -2.99 16 18 C 0.16 2.43 8.62 83.64 0.72 3.15 16 19 N -0.62 -12.49 3.69 -855.50 -3.16 -15.64 16 20 C 0.52 11.83 7.55 87.66 0.66 12.49 16 21 O -0.50 -13.40 16.78 -3.04 -0.05 -13.45 16 22 C 0.35 7.27 2.62 71.24 0.19 7.45 16 23 F -0.15 -3.15 17.06 44.97 0.77 -2.38 16 24 F -0.15 -3.20 17.16 44.97 0.77 -2.43 16 25 Cl -0.08 -1.55 28.09 -2.72 -0.08 -1.63 16 26 C 0.14 3.00 6.94 83.74 0.58 3.58 16 27 C 0.12 4.32 8.00 83.26 0.67 4.99 16 28 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 29 H 0.04 1.94 8.11 -2.39 -0.02 1.92 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 3.00 8.10 -2.39 -0.02 2.98 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 1.52 8.14 -2.38 -0.02 1.51 16 36 H 0.10 2.30 8.12 -2.39 -0.02 2.28 16 37 H 0.08 1.87 8.04 -2.39 -0.02 1.86 16 38 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 39 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -59.12 367.53 3.36 -55.76 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.09 Total: 9.27 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 4.91 Total: 24.72 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -6.03 Total: -89.21 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.10 Total: -35.39 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 1.54 Total: -4.81 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -59.12 3.36 -55.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272024974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.792 kcal (2) G-P(sol) polarization free energy of solvation -59.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds