Wall clock time and date at job start Wed Apr 1 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48498 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47259 * 300.00431 * 3 2 1 6 6 H 1.48507 * 109.46908 * 60.00106 * 3 2 1 7 7 C 1.37879 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00080 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99718 * 359.97438 * 7 2 1 10 10 C 1.53498 * 114.20406 * 179.97438 * 9 7 2 11 11 N 1.47065 * 87.98382 * 139.65557 * 10 9 7 12 12 C 1.34775 * 136.05789 * 152.84569 * 11 10 9 13 13 O 1.21279 * 120.00324 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00127 * 179.97438 * 12 11 10 15 15 H 1.09001 * 115.56448 * 34.22577 * 14 12 11 16 16 C 1.53208 * 117.52867 * 248.35390 * 14 12 11 17 17 C 1.52092 * 117.52299 * 179.97438 * 14 12 11 18 18 C 1.52615 * 129.80849 * 226.49067 * 17 14 12 19 19 N 1.47257 * 87.69329 * 113.63891 * 18 17 14 20 20 C 1.34776 * 135.90119 * 206.22940 * 19 18 17 21 21 O 1.21282 * 119.99940 * 0.02562 * 20 19 18 22 22 C 1.50698 * 120.00035 * 179.97438 * 20 19 18 23 23 F 1.39904 * 109.46653 * 60.00327 * 22 20 19 24 24 F 1.39901 * 109.47344 * 300.00765 * 22 20 19 25 25 Cl 1.80299 * 109.47172 * 180.02562 * 22 20 19 26 26 C 1.47251 * 88.19464 * 26.49048 * 19 18 17 27 27 C 1.47071 * 87.88743 * 333.10007 * 11 10 9 28 28 H 0.96997 * 119.99894 * 359.97438 * 1 2 3 29 29 H 1.09001 * 113.41688 * 46.79746 * 9 7 2 30 30 H 1.09000 * 113.46939 * 24.87836 * 10 9 7 31 31 H 1.09000 * 113.46730 * 254.43364 * 10 9 7 32 32 H 1.08990 * 117.52592 * 145.16113 * 16 14 12 33 33 H 1.09003 * 117.51864 * 359.97438 * 16 14 12 34 34 H 1.09005 * 113.51393 * 358.93685 * 18 17 14 35 35 H 1.08997 * 113.51920 * 228.34615 * 18 17 14 36 36 H 1.09007 * 113.51549 * 88.22071 * 26 19 18 37 37 H 1.09007 * 113.51383 * 218.80053 * 26 19 18 38 38 H 1.09001 * 113.46691 * 141.67865 * 27 11 10 39 39 H 1.08999 * 113.46642 * 272.12348 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.1489 -3.7442 -0.0018 11 7 1.2108 -4.3578 0.9502 12 6 0.8357 -5.6118 1.2714 13 8 1.3287 -6.5586 0.6956 14 6 -0.1965 -5.8377 2.3460 15 1 -0.9797 -5.0826 2.4121 16 6 0.2711 -6.4903 3.6509 17 6 -0.5783 -7.2755 2.6626 18 6 -1.9578 -7.9030 2.8428 19 7 -1.6983 -8.6806 1.6196 20 6 -2.4504 -9.2530 0.6587 21 8 -3.6596 -9.1734 0.7072 22 6 -1.7888 -9.9909 -0.4765 23 9 -1.0305 -11.0496 0.0347 24 9 -0.9533 -9.1150 -1.1780 25 17 -3.0511 -10.6375 -1.5897 26 6 -0.2588 -8.5657 1.9077 27 6 0.8573 -3.0006 1.3929 28 1 -0.4850 0.8400 0.0004 29 1 0.4412 -2.5317 -0.7293 30 1 3.1388 -3.5660 0.4181 31 1 2.1844 -4.2528 -0.9652 32 1 -0.2044 -6.1641 4.5758 33 1 1.3250 -6.7564 3.7315 34 1 -2.7764 -7.1906 2.7398 35 1 -2.0424 -8.5175 3.7391 36 1 0.1214 -9.3616 2.5482 37 1 0.3518 -8.4109 1.0181 38 1 -0.2033 -2.8783 1.6130 39 1 1.4997 -2.6223 2.1880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272024975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:14 Heat of formation + Delta-G solvation = -47.539169 kcal Electronic energy + Delta-G solvation = -28312.868726 eV Core-core repulsion = 23729.055277 eV Total energy + Delta-G solvation = -4583.813449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.75421 -47.95675 -41.14905 -39.61915 -38.71558 -37.14475 -36.83146 -34.82825 -32.75289 -30.04015 -29.29402 -27.01755 -26.37351 -25.61260 -25.07020 -23.36050 -21.17674 -20.47347 -19.27484 -18.65257 -18.43125 -18.27661 -18.01065 -17.01025 -16.61553 -16.48784 -16.09226 -15.33948 -15.06050 -14.77975 -14.69743 -14.52409 -14.41728 -14.22600 -14.00269 -13.61893 -13.25518 -13.18054 -12.97975 -12.59404 -12.36127 -12.07057 -11.91080 -11.76045 -11.61831 -11.42911 -11.16659 -11.02152 -10.90474 -10.86773 -10.65032 -10.40604 -10.30529 -9.67119 -9.34126 -9.25641 -9.01650 -8.65250 -7.97598 -6.24318 -4.30254 0.41712 1.57550 1.94418 2.71675 2.88513 3.18427 3.19678 3.28532 3.31698 3.45133 3.67134 3.91924 3.95496 4.14615 4.28965 4.61237 4.75510 4.95323 5.01210 5.07233 5.11615 5.18265 5.35071 5.44697 5.48292 5.68567 5.75791 5.97296 6.09457 6.16860 6.36621 6.47859 6.55513 6.73991 6.94723 7.17915 7.48596 7.73457 8.10893 8.39316 8.62079 8.74382 9.37167 10.85408 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.016960 B = 0.002469 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.552690 B =11338.746715 C =11902.922811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.101 3.899 11 N -0.636 5.636 12 C 0.559 3.441 13 O -0.562 6.562 14 C -0.137 4.137 15 H 0.129 0.871 16 C -0.112 4.112 17 C -0.158 4.158 18 C 0.153 3.847 19 N -0.624 5.624 20 C 0.524 3.476 21 O -0.480 6.480 22 C 0.344 3.656 23 F -0.155 7.155 24 F -0.144 7.144 25 Cl -0.084 7.084 26 C 0.125 3.875 27 C 0.099 3.901 28 H 0.264 0.736 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.060 0.940 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 -17.442 7.288 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.015 3.985 10 C -0.021 4.021 11 N -0.369 5.369 12 C 0.349 3.651 13 O -0.443 6.443 14 C -0.157 4.157 15 H 0.147 0.853 16 C -0.150 4.150 17 C -0.159 4.159 18 C 0.032 3.968 19 N -0.358 5.358 20 C 0.305 3.695 21 O -0.353 6.353 22 C 0.278 3.722 23 F -0.136 7.136 24 F -0.125 7.125 25 Cl -0.058 7.058 26 C 0.004 3.996 27 C -0.024 4.024 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.771 -18.127 6.796 19.723 hybrid contribution 0.530 0.850 -0.111 1.008 sum -3.241 -17.276 6.685 18.806 Atomic orbital electron populations 1.69957 1.06084 1.27114 1.49030 1.25035 0.94868 0.99456 0.94175 0.86477 0.80188 0.83267 0.77757 1.19541 1.20844 1.20872 1.20929 0.93049 0.89464 1.52104 0.91737 1.20312 0.94765 0.91227 0.92241 1.23376 0.94347 0.93052 0.91326 1.49929 1.42139 1.04759 1.40026 1.18966 0.82175 0.81423 0.82582 1.90575 1.58098 1.40756 1.54848 1.22043 1.01330 0.94683 0.97686 0.85276 1.22817 1.00445 0.99354 0.92432 1.21827 0.97266 0.92529 1.04300 1.22575 0.96134 0.92158 0.85917 1.49300 1.10936 1.52190 1.23390 1.19326 0.87056 0.80600 0.82523 1.90863 1.11848 1.57866 1.74738 1.23928 0.82226 0.79255 0.86747 1.93184 1.76417 1.57477 1.86497 1.93269 1.71716 1.68030 1.79512 1.98881 1.54805 1.87102 1.65005 1.22989 0.80899 0.94264 1.01440 1.23602 0.99830 0.76631 1.02288 0.92626 0.91393 0.90717 0.92376 0.86807 0.87336 0.89163 0.87746 0.88142 0.86670 0.92181 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.46 13.26 55.43 0.74 -22.73 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 19.52 29.54 -169.99 -5.02 14.50 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.52 -12.70 8.82 -34.44 -0.30 -13.01 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.03 0.76 3.77 -91.39 -0.34 0.41 16 10 C 0.10 2.00 8.19 -8.50 -0.07 1.93 16 11 N -0.64 -12.02 3.69 -185.36 -0.68 -12.71 16 12 C 0.56 9.83 7.86 -10.98 -0.09 9.74 16 13 O -0.56 -11.05 15.05 5.56 0.08 -10.96 16 14 C -0.14 -1.77 6.02 -92.13 -0.55 -2.32 16 15 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 16 C -0.11 -1.02 10.24 -27.06 -0.28 -1.30 16 17 C -0.16 -1.65 3.15 -155.68 -0.49 -2.14 16 18 C 0.15 1.41 8.62 -7.63 -0.07 1.34 16 19 N -0.62 -7.52 3.69 -184.34 -0.68 -8.20 16 20 C 0.52 7.19 7.55 -10.99 -0.08 7.11 16 21 O -0.48 -7.50 16.78 5.56 0.09 -7.41 16 22 C 0.34 4.45 2.62 36.00 0.09 4.55 16 23 F -0.15 -1.82 17.16 2.25 0.04 -1.78 16 24 F -0.14 -2.08 17.08 2.25 0.04 -2.04 16 25 Cl -0.08 -1.03 28.09 -51.86 -1.46 -2.48 16 26 C 0.13 1.40 8.02 -7.51 -0.06 1.34 16 27 C 0.10 1.94 7.98 -8.63 -0.07 1.87 16 28 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.07 1.69 8.11 -51.93 -0.42 1.27 16 30 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.12 1.63 5.93 -51.93 -0.31 1.32 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -29.18 365.46 -8.25 -37.43 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.50 Total: -0.27 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -2.41 Total: 11.15 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.63 Total: -43.64 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.18 Total: -18.37 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.08 Total: -3.82 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.46 Total: -2.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.18 -8.25 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272024975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.114 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds