Wall clock time and date at job start Wed Apr 1 2020 05:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99988 * 2 1 4 4 H 1.48498 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47259 * 300.00431 * 3 2 1 6 6 H 1.48507 * 109.46908 * 60.00106 * 3 2 1 7 7 C 1.37879 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00080 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99718 * 359.97438 * 7 2 1 10 10 C 1.53498 * 114.20406 * 179.97438 * 9 7 2 11 11 N 1.47065 * 87.98382 * 139.65557 * 10 9 7 12 12 C 1.34775 * 136.05789 * 152.84569 * 11 10 9 13 13 O 1.21279 * 120.00324 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00127 * 179.97438 * 12 11 10 15 15 H 1.09001 * 115.56448 * 34.22577 * 14 12 11 16 16 C 1.53208 * 117.52867 * 248.35390 * 14 12 11 17 17 C 1.52092 * 117.52299 * 179.97438 * 14 12 11 18 18 C 1.52615 * 129.80849 * 226.49067 * 17 14 12 19 19 N 1.47257 * 87.69329 * 113.63891 * 18 17 14 20 20 C 1.34776 * 135.90119 * 206.22940 * 19 18 17 21 21 O 1.21282 * 119.99940 * 0.02562 * 20 19 18 22 22 C 1.50698 * 120.00035 * 179.97438 * 20 19 18 23 23 F 1.39904 * 109.46653 * 60.00327 * 22 20 19 24 24 F 1.39901 * 109.47344 * 300.00765 * 22 20 19 25 25 Cl 1.80299 * 109.47172 * 180.02562 * 22 20 19 26 26 C 1.47251 * 88.19464 * 26.49048 * 19 18 17 27 27 C 1.47071 * 87.88743 * 333.10007 * 11 10 9 28 28 H 0.96997 * 119.99894 * 359.97438 * 1 2 3 29 29 H 1.09001 * 113.41688 * 46.79746 * 9 7 2 30 30 H 1.09000 * 113.46939 * 24.87836 * 10 9 7 31 31 H 1.09000 * 113.46730 * 254.43364 * 10 9 7 32 32 H 1.08990 * 117.52592 * 145.16113 * 16 14 12 33 33 H 1.09003 * 117.51864 * 359.97438 * 16 14 12 34 34 H 1.09005 * 113.51393 * 358.93685 * 18 17 14 35 35 H 1.08997 * 113.51920 * 228.34615 * 18 17 14 36 36 H 1.09007 * 113.51549 * 88.22071 * 26 19 18 37 37 H 1.09007 * 113.51383 * 218.80053 * 26 19 18 38 38 H 1.09001 * 113.46691 * 141.67865 * 27 11 10 39 39 H 1.08999 * 113.46642 * 272.12348 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.1489 -3.7442 -0.0018 11 7 1.2108 -4.3578 0.9502 12 6 0.8357 -5.6118 1.2714 13 8 1.3287 -6.5586 0.6956 14 6 -0.1965 -5.8377 2.3460 15 1 -0.9797 -5.0826 2.4121 16 6 0.2711 -6.4903 3.6509 17 6 -0.5783 -7.2755 2.6626 18 6 -1.9578 -7.9030 2.8428 19 7 -1.6983 -8.6806 1.6196 20 6 -2.4504 -9.2530 0.6587 21 8 -3.6596 -9.1734 0.7072 22 6 -1.7888 -9.9909 -0.4765 23 9 -1.0305 -11.0496 0.0347 24 9 -0.9533 -9.1150 -1.1780 25 17 -3.0511 -10.6375 -1.5897 26 6 -0.2588 -8.5657 1.9077 27 6 0.8573 -3.0006 1.3929 28 1 -0.4850 0.8400 0.0004 29 1 0.4412 -2.5317 -0.7293 30 1 3.1388 -3.5660 0.4181 31 1 2.1844 -4.2528 -0.9652 32 1 -0.2044 -6.1641 4.5758 33 1 1.3250 -6.7564 3.7315 34 1 -2.7764 -7.1906 2.7398 35 1 -2.0424 -8.5175 3.7391 36 1 0.1214 -9.3616 2.5482 37 1 0.3518 -8.4109 1.0181 38 1 -0.2033 -2.8783 1.6130 39 1 1.4997 -2.6223 2.1880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272024975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:13 Heat of formation + Delta-G solvation = -64.532119 kcal Electronic energy + Delta-G solvation = -28313.605596 eV Core-core repulsion = 23729.055277 eV Total energy + Delta-G solvation = -4584.550319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.79039 -48.99848 -42.11122 -40.98324 -39.88978 -38.54286 -37.85292 -35.81740 -34.63761 -31.28215 -30.64830 -28.04429 -27.33874 -27.09978 -26.69937 -24.56823 -22.20938 -21.90859 -20.37817 -19.62307 -19.49931 -19.42489 -19.11593 -18.73159 -18.03048 -17.55107 -17.00539 -16.64874 -16.60474 -16.11476 -15.89945 -15.74575 -15.53866 -15.27195 -15.06449 -14.82251 -14.48395 -14.37030 -14.13139 -13.94798 -13.44663 -13.28315 -13.24855 -13.13679 -12.90533 -12.75497 -12.75132 -12.57795 -12.20103 -12.12687 -11.72246 -11.64328 -11.33675 -11.20813 -11.04315 -10.65554 -10.50056 -10.15541 -9.53370 -8.16451 -6.27455 -0.57678 0.54687 0.99752 1.46492 1.48672 1.51196 1.60750 1.88552 1.92054 2.43822 2.46726 2.72389 2.90892 2.98651 3.14518 3.25667 3.66263 3.79132 3.99161 4.17399 4.27453 4.37038 4.41982 4.45194 4.51236 4.56856 4.69428 4.72053 4.72875 4.85756 4.87852 4.95666 5.02867 5.14579 5.60146 5.81950 5.98337 6.20706 6.23514 6.81714 6.93307 7.18132 7.42961 8.93662 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.016960 B = 0.002469 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.552690 B =11338.746715 C =11902.922811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.525 4.525 8 H 0.067 0.933 9 C 0.018 3.982 10 C 0.106 3.894 11 N -0.641 5.641 12 C 0.553 3.447 13 O -0.587 6.587 14 C -0.169 4.169 15 H 0.133 0.867 16 C -0.073 4.073 17 C -0.153 4.153 18 C 0.158 3.842 19 N -0.628 5.628 20 C 0.518 3.482 21 O -0.507 6.507 22 C 0.344 3.656 23 F -0.147 7.147 24 F -0.157 7.157 25 Cl -0.080 7.080 26 C 0.122 3.878 27 C 0.119 3.881 28 H 0.264 0.736 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.152 0.848 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 -17.999 9.861 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.085 0.915 9 C -0.001 4.001 10 C -0.016 4.016 11 N -0.374 5.374 12 C 0.345 3.655 13 O -0.469 6.469 14 C -0.189 4.189 15 H 0.151 0.849 16 C -0.111 4.111 17 C -0.154 4.154 18 C 0.038 3.962 19 N -0.361 5.361 20 C 0.300 3.700 21 O -0.382 6.382 22 C 0.278 3.722 23 F -0.128 7.128 24 F -0.138 7.138 25 Cl -0.054 7.054 26 C 0.001 3.999 27 C -0.004 4.004 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.170 0.830 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.254 -18.691 9.395 21.171 hybrid contribution 0.428 0.948 -0.968 1.421 sum -2.826 -17.743 8.427 19.845 Atomic orbital electron populations 1.70065 1.07431 1.27768 1.50459 1.25756 0.95542 1.02543 0.94085 0.85507 0.79266 0.79414 0.77471 1.18742 1.21253 1.20422 1.21229 0.93329 0.90412 1.51387 0.91474 1.20196 0.94561 0.91885 0.93468 1.23207 0.94711 0.91958 0.91734 1.49928 1.42182 1.05242 1.40012 1.19826 0.82434 0.80255 0.83028 1.90572 1.59245 1.41158 1.55944 1.22026 1.01067 0.96874 0.98956 0.84891 1.23022 1.00637 0.95645 0.91813 1.21829 0.98534 0.90668 1.04389 1.22881 0.95084 0.92182 0.86031 1.49525 1.11511 1.51364 1.23742 1.19389 0.86908 0.80860 0.82891 1.90842 1.12724 1.59211 1.75451 1.23934 0.82172 0.79317 0.86760 1.93192 1.76245 1.57028 1.86362 1.93243 1.72158 1.68577 1.79821 1.98878 1.54593 1.86977 1.64941 1.23156 0.79962 0.95985 1.00768 1.23253 0.99884 0.76786 1.00457 0.92687 0.94865 0.89528 0.93062 0.83016 0.87106 0.89222 0.83622 0.84593 0.89948 0.92241 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.46 13.26 21.45 0.28 -49.17 16 2 C 0.02 1.06 5.46 84.65 0.46 1.52 16 3 Si 0.96 39.94 29.54 68.60 2.03 41.97 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.53 -25.96 8.82 25.60 0.23 -25.74 16 8 H 0.07 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.02 0.84 3.77 -11.29 -0.04 0.79 16 10 C 0.11 4.28 8.19 83.19 0.68 4.96 16 11 N -0.64 -24.20 3.69 -858.75 -3.17 -27.37 16 12 C 0.55 19.17 7.86 87.66 0.69 19.86 16 13 O -0.59 -23.13 15.05 -3.03 -0.05 -23.17 16 14 C -0.17 -4.04 6.02 -11.77 -0.07 -4.11 16 15 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 16 C -0.07 -1.03 10.24 30.38 0.31 -0.72 16 17 C -0.15 -2.75 3.15 -52.94 -0.17 -2.91 16 18 C 0.16 2.37 8.62 83.64 0.72 3.09 16 19 N -0.63 -14.03 3.69 -855.53 -3.16 -17.18 16 20 C 0.52 13.88 7.55 87.66 0.66 14.54 16 21 O -0.51 -15.61 16.78 -3.04 -0.05 -15.66 16 22 C 0.34 8.85 2.62 71.24 0.19 9.03 16 23 F -0.15 -3.36 17.16 44.97 0.77 -2.59 16 24 F -0.16 -4.62 17.08 44.97 0.77 -3.85 16 25 Cl -0.08 -1.95 28.09 -2.72 -0.08 -2.02 16 26 C 0.12 2.47 8.02 83.72 0.67 3.14 16 27 C 0.12 4.64 7.98 83.10 0.66 5.30 16 28 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 29 H 0.03 1.74 8.11 -2.39 -0.02 1.72 16 30 H 0.09 3.25 8.10 -2.39 -0.02 3.23 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.14 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.08 2.29 5.93 -2.38 -0.01 2.28 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.09 3.18 8.10 -2.39 -0.02 3.16 16 Total: -1.00 -65.00 365.46 3.44 -61.55 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.10 Total: 8.75 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 4.99 Total: 28.75 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -6.04 Total: -93.73 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.10 Total: -38.83 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 1.54 Total: -6.44 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.02 kcal Total: -65.00 3.44 -61.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272024975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.981 kcal (2) G-P(sol) polarization free energy of solvation -64.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds