Wall clock time and date at job start Wed Apr 1 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99982 * 2 1 4 4 C 1.53001 * 109.47462 * 270.00251 * 3 2 1 5 5 H 1.08996 * 109.47300 * 305.00347 * 4 3 2 6 6 O 1.42902 * 109.47024 * 64.99864 * 4 3 2 7 7 C 1.52991 * 109.47374 * 184.99919 * 4 3 2 8 8 N 1.46503 * 109.47402 * 180.02562 * 7 4 3 9 9 C 1.36937 * 120.00301 * 179.72080 * 8 7 4 10 10 H 1.07997 * 119.99686 * 0.28388 * 9 8 7 11 11 C 1.38808 * 120.00235 * 180.27305 * 9 8 7 12 12 N 1.31624 * 119.99952 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00196 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47040 * 90.00299 * 13 11 9 15 15 H 1.48499 * 109.46946 * 210.00119 * 13 11 9 16 16 H 1.48499 * 109.47001 * 330.00369 * 13 11 9 17 17 C 1.34773 * 119.99946 * 180.02562 * 2 1 3 18 18 O 1.21590 * 119.99566 * 175.71867 * 17 2 1 19 19 C 1.47572 * 120.00135 * 355.71451 * 17 2 1 20 20 C 1.39737 * 120.13447 * 48.46156 * 19 17 2 21 21 C 1.37750 * 119.92435 * 180.02562 * 20 19 17 22 22 C 1.38735 * 120.20108 * 359.97438 * 21 20 19 23 23 F 1.35099 * 119.85682 * 180.02562 * 22 21 20 24 24 C 1.38588 * 120.27805 * 359.97438 * 22 21 20 25 25 Cl 1.73593 * 119.96235 * 179.97438 * 24 22 21 26 26 C 1.38293 * 120.07087 * 359.72204 * 24 22 21 27 27 F 1.35094 * 120.10316 * 180.29996 * 26 24 22 28 28 H 1.08993 * 109.47445 * 95.04466 * 1 2 3 29 29 H 1.08996 * 109.46936 * 215.05061 * 1 2 3 30 30 H 1.09003 * 109.46784 * 335.04655 * 1 2 3 31 31 H 1.08998 * 109.47109 * 150.00183 * 3 2 1 32 32 H 1.09000 * 109.47225 * 30.00503 * 3 2 1 33 33 H 0.96704 * 114.00109 * 59.99842 * 6 4 3 34 34 H 1.08996 * 109.47407 * 59.99999 * 7 4 3 35 35 H 1.09005 * 109.47539 * 299.99969 * 7 4 3 36 36 H 0.97003 * 119.99760 * 0.02562 * 8 7 4 37 37 H 0.96999 * 120.00090 * 179.97438 * 12 11 9 38 38 H 1.08000 * 120.04034 * 0.02562 * 20 19 17 39 39 H 1.07995 * 119.89263 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 2.9641 0.9133 -1.9816 6 8 1.2060 1.9937 -2.0813 7 6 3.3237 2.9681 -1.4443 8 7 3.5673 3.3915 -2.8255 9 6 4.3230 4.5055 -3.0770 10 1 4.7432 5.0693 -2.2573 11 6 4.5491 4.9098 -4.3855 12 7 4.0368 4.2228 -5.3845 13 14 5.5805 6.4290 -4.7286 14 1 7.0067 6.0384 -4.8655 15 1 5.1189 7.0666 -5.9878 16 1 5.4359 7.3895 -3.6054 17 6 2.1388 -1.1672 -0.0005 18 8 3.3522 -1.1685 -0.0791 19 6 1.4041 -2.4435 0.0944 20 6 0.3032 -2.6823 -0.7324 21 6 -0.3798 -3.8750 -0.6398 22 6 0.0222 -4.8405 0.2718 23 9 -0.6524 -6.0079 0.3564 24 6 1.1135 -4.6128 1.0951 25 17 1.6090 -5.8263 2.2333 26 6 1.8113 -3.4220 1.0073 27 9 2.8788 -3.2019 1.8054 28 1 -0.3634 -0.0904 -1.0236 29 1 -0.3633 -0.8413 0.5902 30 1 -0.3633 0.9318 0.4336 31 1 3.1499 1.1384 0.5138 32 1 1.6085 2.0284 0.5139 33 1 0.6954 2.6950 -1.6541 34 1 4.2745 2.7522 -0.9570 35 1 2.8120 3.7655 -0.9052 36 1 3.1897 2.8853 -3.5617 37 1 4.1945 4.5056 -6.2989 38 1 -0.0118 -1.9328 -1.4433 39 1 -1.2303 -4.0592 -1.2793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278803610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:22 Heat of formation + Delta-G solvation = -126.929887 kcal Electronic energy + Delta-G solvation = -27861.612444 eV Core-core repulsion = 23274.356355 eV Total energy + Delta-G solvation = -4587.256089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.68112 -49.51363 -40.68549 -38.91717 -37.51729 -37.11719 -35.42132 -34.01853 -31.91870 -31.31803 -31.15459 -29.38155 -27.06755 -25.86146 -24.08271 -23.80704 -22.68552 -21.25820 -20.23010 -18.80743 -18.15427 -17.86609 -17.17511 -16.90313 -16.63304 -16.41721 -16.12922 -15.80932 -15.75705 -15.25876 -15.12813 -14.91715 -14.45421 -14.20375 -13.85607 -13.42823 -13.30111 -13.21391 -13.17412 -12.98547 -12.81785 -12.50515 -12.29126 -12.15314 -11.96026 -11.64477 -11.54954 -10.94236 -10.82244 -10.73060 -10.33095 -10.16514 -9.85688 -9.70385 -9.49986 -9.42659 -8.89066 -8.67309 -6.91498 -5.74248 -3.03732 -0.06892 0.18028 1.26628 2.16069 2.57070 2.77661 3.02656 3.44566 3.49186 3.51077 3.59622 3.83701 3.94428 4.18410 4.55227 4.63197 4.73496 4.78343 4.87298 4.96804 5.06903 5.14109 5.16079 5.22910 5.31739 5.46797 5.55634 5.62439 5.69169 5.82997 5.95414 6.18622 6.31625 6.53268 6.71773 7.03218 7.69416 7.82492 7.98070 8.44016 9.55467 10.13140 10.48914 11.48176 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.024385 B = 0.002091 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.964805 B =13390.505410 C =13751.568520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.597 5.597 3 C 0.087 3.913 4 C 0.086 3.914 5 H 0.102 0.898 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.558 3.442 18 O -0.511 6.511 19 C -0.159 4.159 20 C -0.025 4.025 21 C -0.156 4.156 22 C 0.159 3.841 23 F -0.114 7.114 24 C -0.127 4.127 25 Cl -0.022 7.022 26 C 0.189 3.811 27 F -0.101 7.101 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.367 0.633 34 H 0.028 0.972 35 H 0.020 0.980 36 H 0.389 0.611 37 H 0.255 0.745 38 H 0.163 0.837 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.017 -18.970 15.901 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.329 5.329 3 C -0.035 4.035 4 C 0.026 3.974 5 H 0.120 0.880 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.345 3.655 18 O -0.386 6.386 19 C -0.163 4.163 20 C -0.044 4.044 21 C -0.175 4.175 22 C 0.138 3.862 23 F -0.092 7.092 24 C -0.156 4.156 25 Cl 0.007 6.993 26 C 0.167 3.833 27 F -0.079 7.079 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.213 0.787 34 H 0.045 0.955 35 H 0.037 0.963 36 H 0.223 0.777 37 H 0.065 0.935 38 H 0.180 0.820 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.996 -19.426 15.627 28.591 hybrid contribution 0.392 0.782 0.180 0.894 sum -13.603 -18.644 15.807 27.973 Atomic orbital electron populations 1.22052 0.79062 1.03294 1.02455 1.47581 1.07283 1.05491 1.72543 1.22361 0.98452 0.83809 0.98924 1.22547 0.85241 0.98311 0.91351 0.88027 1.86607 1.32286 1.59049 1.57504 1.21211 0.96393 0.92836 0.89803 1.42234 1.61966 1.32040 1.00757 1.19215 1.23873 1.02432 0.91836 0.91263 1.24763 1.01184 0.99412 0.95590 1.69684 1.49098 1.40807 0.98250 0.86180 0.80017 0.82594 0.77318 1.21684 1.21750 1.20787 1.17788 0.87020 0.83001 0.77736 1.90901 1.12974 1.86678 1.48074 1.20039 0.99756 0.96139 1.00412 1.21382 0.90583 0.96715 0.95720 1.21176 1.03368 0.92909 1.00016 1.17277 0.90117 0.83241 0.95516 1.91599 1.77986 1.44638 1.94941 1.20834 1.00246 0.93549 1.00991 1.98423 1.90586 1.52595 1.57656 1.16927 0.84856 0.91294 0.90217 1.91645 1.51518 1.94380 1.70313 0.91284 0.91427 0.90370 0.88647 0.89649 0.78659 0.95469 0.96262 0.77665 0.93501 0.82006 0.82124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 8.69 59.85 0.52 1.01 16 2 N -0.60 -6.44 2.84 -182.80 -0.52 -6.96 16 3 C 0.09 1.05 5.07 -4.04 -0.02 1.03 16 4 C 0.09 1.36 3.30 -26.74 -0.09 1.27 16 5 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 6 O -0.55 -8.37 12.64 -35.23 -0.45 -8.82 16 7 C 0.13 2.48 5.92 -4.04 -0.02 2.45 16 8 N -0.73 -18.71 5.49 -59.91 -0.33 -19.03 16 9 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.56 7.29 7.02 -12.45 -0.09 7.21 16 18 O -0.51 -8.91 16.23 5.29 0.09 -8.82 16 19 C -0.16 -1.61 4.91 -104.91 -0.52 -2.12 16 20 C -0.03 -0.17 7.77 -39.20 -0.30 -0.48 16 21 C -0.16 -0.87 10.00 -39.58 -0.40 -1.27 16 22 C 0.16 1.21 7.28 -39.27 -0.29 0.93 16 23 F -0.11 -0.90 16.82 2.25 0.04 -0.86 16 24 C -0.13 -1.19 6.32 -39.43 -0.25 -1.44 16 25 Cl -0.02 -0.20 28.26 -51.86 -1.47 -1.67 16 26 C 0.19 2.03 7.23 -38.94 -0.28 1.75 16 27 F -0.10 -1.29 16.05 2.25 0.04 -1.26 16 28 H 0.07 0.43 7.04 -51.93 -0.37 0.06 16 29 H 0.07 0.35 6.27 -51.93 -0.33 0.02 16 30 H 0.08 0.41 7.84 -51.93 -0.41 0.00 16 31 H 0.10 1.27 7.48 -51.93 -0.39 0.88 16 32 H 0.09 0.78 7.86 -51.93 -0.41 0.37 16 33 H 0.37 4.33 9.05 45.56 0.41 4.74 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.39 10.81 7.54 -40.82 -0.31 10.50 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.16 0.83 6.25 -52.49 -0.33 0.51 16 39 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -35.42 359.21 -6.82 -42.24 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.36 Total: 7.33 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.98 Total: 2.82 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.12 Total: -53.99 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.36 Total: -17.64 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.07 Total: -2.12 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.47 Total: -1.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.42 -6.82 -42.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278803610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.693 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds